Heterogeneous nuclear ribonucleoprotein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g23960 FvH4_3g23960 FvH4_3g23960 |
| malus_domestica | MD03G1189400.v1.1 MD11G1205500.v1.1 |
| prunus_persica | Prupe.4G231900_v2.0.a1 Prupe.4G231900_v2.0.a1 Prupe.4G231900_v2.0.a1 Prupe.4G231900_v2.0.a1 Prupe.4G231900_v2.0.a1 |
| pyrus_communis | pycom03g14230 pycom11g17830 |
| rosa_chinensis | RchiOBHm_Chr5g0042461 |
| rosa_laevigata | RLG00000034128 |
| rosa_multiflora | Rmu_sc0002779.1_g000004 |
| rosa_roxburghii | Rroxscaffold_1G00038230 |
| rosa_rugosa | Rorug05G0200400 Rorug05G0200500 |
| rosa_samantha | Rh5AG286600 Rh5BG291200 Rh5CG323300 Rh5DG300900 |
| rosa_wichuraiana | Rw5G026620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 663 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 32, 806 |
| AciI | CCGC | 3 cut(s) | 182, 235, 735 |
| AclWI | GGATC | 6 cut(s) | 144, 179, 192, 279, 1234, 1326 |
| AfaI | GTAC | 3 cut(s) | 389, 1003, 1265 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 32, 241, 320, 602, 680, 806, 1005 |
| AgeI | ACCGGT | 1 cut(s) | 146 |
| AgsI | TTSAA | 4 cut(s) | 879, 1018, 1026, 1040 |
| AjnI | CCWGG | 7 cut(s) | 59, 319, 577, 619, 704, 787, 1222 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1032, 1064 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 692, 724 |
| AluBI | AGCT | 3 cut(s) | 40, 648, 1155 |
| AluI | AGCT | 3 cut(s) | 40, 648, 1155 |
| Alw21I | GWGCWC | 1 cut(s) | 157 |
| Alw26I | GTCTC | 2 cut(s) | 747, 790 |
| AlwI | GGATC | 6 cut(s) | 144, 179, 192, 279, 1234, 1326 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 413 |
| AoxI | GGCC | 3 cut(s) | 449, 581, 751 |
| ApaI | GGGCCC | 1 cut(s) | 585 |
| ApeKI | GCWGC | 2 cut(s) | 927, 1152 |
| AsiGI | ACCGGT | 1 cut(s) | 146 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 41 |
| AspLEI | GCGC | 2 cut(s) | 1076, 1302 |
| AspS9I | GGNCC | 4 cut(s) | 581, 582, 627, 752 |
| AsuC2I | CCSGG | 1 cut(s) | 1006 |
| AsuHPI | GGTGA | 2 cut(s) | 358, 1202 |
| AvaII | GGWCC | 1 cut(s) | 627 |
| AxyI | CCTNAGG | 1 cut(s) | 264 |
| BaeGI | GKGCMC | 1 cut(s) | 585 |
| BamHI | GGATCC | 1 cut(s) | 184 |
| BanII | GRGCYC | 4 cut(s) | 585, 596, 674, 860 |
| BauI | CACGAG | 1 cut(s) | 156 |
| Bbv12I | GWGCWC | 1 cut(s) | 157 |
| BbvI | GCAGC | 2 cut(s) | 939, 1164 |
| BccI | CCATC | 3 cut(s) | 13, 532, 1323 |
| BceAI | ACGGC | 2 cut(s) | 95, 988 |
| BciT130I | CCWGG | 7 cut(s) | 61, 321, 579, 621, 706, 789, 1224 |
| BclI | TGATCA | 2 cut(s) | 126, 433 |
| BcnI | CCSGG | 1 cut(s) | 1006 |
| BcoDI | GTCTC | 2 cut(s) | 747, 790 |
| BfaI | CTAG | 6 cut(s) | 315, 723, 836, 1305, 1326, 1336 |
| BfmI | CTRYAG | 1 cut(s) | 613 |
| BfoI | RGCGCY | 2 cut(s) | 1077, 1303 |
| BisI | GCNGC | 3 cut(s) | 235, 928, 1153 |
| BlsI | GCNGC | 3 cut(s) | 236, 929, 1154 |
| BmcAI | AGTACT | 1 cut(s) | 389 |
| Bme1390I | CCNGG | 8 cut(s) | 61, 321, 579, 621, 706, 789, 1006, 1224 |
| Bme18I | GGWCC | 1 cut(s) | 627 |
| BmgT120I | GGNCC | 4 cut(s) | 581, 582, 627, 752 |
| BmiI | GGNNCC | 6 cut(s) | 24, 186, 310, 583, 593, 786 |
| BmrFI | CCNGG | 8 cut(s) | 61, 321, 579, 621, 706, 789, 1006, 1224 |
| BmrI | ACTGGG | 1 cut(s) | 303 |
| BmsI | GCATC | 2 cut(s) | 699, 984 |
| BmuI | ACTGGG | 1 cut(s) | 303 |
| BpmI | CTGGAG | 1 cut(s) | 803 |
| BpuEI | CTTGAG | 1 cut(s) | 68 |
| BpuMI | CCSGG | 1 cut(s) | 1006 |
| Bsa29I | ATCGAT | 3 cut(s) | 228, 397, 1321 |
| BsaAI | YACGTR | 1 cut(s) | 474 |
| BsaI | GGTCTC | 1 cut(s) | 790 |
| BsaJI | CCNNGG | 5 cut(s) | 60, 577, 578, 788, 1005 |
| BsaWI | WCCGGW | 1 cut(s) | 146 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 99, 129, 776, 806 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 32, 241, 320, 602, 680, 806, 1005 |
| Bse118I | RCCGGY | 1 cut(s) | 146 |
| Bse1I | ACTGG | 2 cut(s) | 298, 999 |
| Bse21I | CCTNAGG | 1 cut(s) | 264 |
| Bse3DI | GCAATG | 1 cut(s) | 1104 |
| BseBI | CCWGG | 7 cut(s) | 61, 321, 579, 621, 706, 789, 1224 |
| BseCI | ATCGAT | 3 cut(s) | 228, 397, 1321 |
| BseDI | CCNNGG | 5 cut(s) | 60, 577, 578, 788, 1005 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 32, 241, 320, 602, 680, 806, 1005 |
| BseMI | GCAATG | 1 cut(s) | 1104 |
| BseNI | ACTGG | 2 cut(s) | 298, 999 |
| BseRI | GAGGAG | 2 cut(s) | 500, 937 |
| BseSI | GKGCMC | 1 cut(s) | 585 |
| BseXI | GCAGC | 2 cut(s) | 939, 1164 |
| BseYI | CCCAGC | 1 cut(s) | 584 |
| Bsh1285I | CGRYCG | 1 cut(s) | 151 |
| BshFI | GGCC | 3 cut(s) | 451, 583, 753 |
| BshTI | ACCGGT | 1 cut(s) | 146 |
| BshVI | ATCGAT | 3 cut(s) | 228, 397, 1321 |
| BsiEI | CGRYCG | 1 cut(s) | 151 |
| BsiHKAI | GWGCWC | 1 cut(s) | 157 |
| BsiSI | CCGG | 3 cut(s) | 147, 589, 1005 |
| BslFI | GGGAC | 2 cut(s) | 77, 545 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 32, 241, 320, 602, 680, 806, 1005 |
| BsmAI | GTCTC | 2 cut(s) | 747, 790 |
| BsmFI | GGGAC | 2 cut(s) | 77, 545 |
| BsnI | GGCC | 3 cut(s) | 451, 583, 753 |
| Bso31I | GGTCTC | 1 cut(s) | 790 |
| Bsp120I | GGGCCC | 1 cut(s) | 581 |
| Bsp1286I | GDGCHC | 5 cut(s) | 157, 585, 596, 674, 860 |
| BspACI | CCGC | 3 cut(s) | 182, 235, 735 |
| BspANI | GGCC | 3 cut(s) | 451, 583, 753 |
| BspDI | ATCGAT | 3 cut(s) | 228, 397, 1321 |
| BspHI | TCATGA | 2 cut(s) | 129, 520 |
| BspLI | GGNNCC | 6 cut(s) | 24, 186, 310, 583, 593, 786 |
| BspPI | GGATC | 6 cut(s) | 144, 179, 192, 279, 1234, 1326 |
| BspQI | GCTCTTC | 1 cut(s) | 47 |
| BspTNI | GGTCTC | 1 cut(s) | 790 |
| BsrDI | GCAATG | 1 cut(s) | 1104 |
| BsrFI | RCCGGY | 1 cut(s) | 146 |
| BsrI | ACTGG | 2 cut(s) | 298, 999 |
| BssAI | RCCGGY | 1 cut(s) | 146 |
| BssECI | CCNNGG | 5 cut(s) | 60, 577, 578, 788, 1005 |
| BssSI | CACGAG | 1 cut(s) | 156 |
| Bst2BI | CACGAG | 1 cut(s) | 156 |
| Bst2UI | CCWGG | 7 cut(s) | 61, 321, 579, 621, 706, 789, 1224 |
| Bst4CI | ACNGT | 6 cut(s) | 241, 364, 409, 1190, 1234, 1274 |
| Bst6I | CTCTTC | 2 cut(s) | 47, 1027 |
| BstBAI | YACGTR | 1 cut(s) | 474 |
| BstDEI | CTNAG | 1 cut(s) | 264 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 600 |
| BstH2I | RGCGCY | 2 cut(s) | 1077, 1303 |
| BstHHI | GCGC | 2 cut(s) | 1076, 1302 |
| BstMAI | GTCTC | 2 cut(s) | 747, 790 |
| BstMCI | CGRYCG | 1 cut(s) | 151 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 188, 254 |
| BstNI | CCWGG | 7 cut(s) | 61, 321, 579, 621, 706, 789, 1224 |
| BstSCI | CCNGG | 8 cut(s) | 59, 319, 577, 619, 704, 787, 1004, 1222 |
| BstSFI | CTRYAG | 1 cut(s) | 613 |
| BstSLI | GKGCMC | 1 cut(s) | 585 |
| BstSNI | TACGTA | 1 cut(s) | 474 |
| BstV1I | GCAGC | 2 cut(s) | 939, 1164 |
| BstX2I | RGATCY | 1 cut(s) | 184 |
| BstYI | RGATCY | 1 cut(s) | 184 |
| Bsu15I | ATCGAT | 3 cut(s) | 228, 397, 1321 |
| Bsu36I | CCTNAGG | 1 cut(s) | 264 |
| BsuRI | GGCC | 3 cut(s) | 451, 583, 753 |
| BsuTUI | ATCGAT | 3 cut(s) | 228, 397, 1321 |
| BtsIMutI | CAGTG | 2 cut(s) | 246, 411 |
| CaiI | CAGNNNCTG | 1 cut(s) | 413 |
| CciI | TCATGA | 2 cut(s) | 129, 520 |
| CfoI | GCGC | 2 cut(s) | 1076, 1302 |
| Cfr10I | RCCGGY | 1 cut(s) | 146 |
| Cfr13I | GGNCC | 4 cut(s) | 581, 582, 627, 752 |
| ClaI | ATCGAT | 3 cut(s) | 228, 397, 1321 |
| CseI | GACGC | 2 cut(s) | 333, 345 |
| CsiI | ACCWGGT | 1 cut(s) | 704 |
| Csp6I | GTAC | 3 cut(s) | 388, 1002, 1264 |
| CspAI | ACCGGT | 1 cut(s) | 146 |
| CviAII | CATG | 4 cut(s) | 32, 130, 223, 521 |
| CviQI | GTAC | 3 cut(s) | 388, 1002, 1264 |
| DdeI | CTNAG | 1 cut(s) | 264 |
| DraI | TTTAAA | 1 cut(s) | 285 |
| Eam1104I | CTCTTC | 2 cut(s) | 47, 1027 |
| EarI | CTCTTC | 2 cut(s) | 47, 1027 |
| Eco105I | TACGTA | 1 cut(s) | 474 |
| Eco24I | GRGCYC | 4 cut(s) | 585, 596, 674, 860 |
| Eco31I | GGTCTC | 1 cut(s) | 790 |
| Eco47I | GGWCC | 1 cut(s) | 627 |
| Eco81I | CCTNAGG | 1 cut(s) | 264 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 600 |
| EcoO109I | RGGNCCY | 1 cut(s) | 581 |
| EcoRII | CCWGG | 7 cut(s) | 59, 319, 577, 619, 704, 787, 1222 |
| EcoT38I | GRGCYC | 4 cut(s) | 585, 596, 674, 860 |
| FaeI | CATG | 4 cut(s) | 35, 133, 226, 524 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 374, 406 |
| FaqI | GGGAC | 2 cut(s) | 77, 545 |
| FatI | CATG | 4 cut(s) | 31, 129, 222, 520 |
| FauI | CCCGC | 1 cut(s) | 728 |
| FbaI | TGATCA | 2 cut(s) | 126, 433 |
| Fnu4HI | GCNGC | 3 cut(s) | 235, 928, 1153 |
| FriOI | GRGCYC | 4 cut(s) | 585, 596, 674, 860 |
| Fsp4HI | GCNGC | 3 cut(s) | 235, 928, 1153 |
| FspBI | CTAG | 6 cut(s) | 315, 723, 836, 1305, 1326, 1336 |
| GlaI | GCGC | 2 cut(s) | 1075, 1301 |
| GluI | GCNGC | 3 cut(s) | 235, 928, 1153 |
| GsaI | CCCAGC | 1 cut(s) | 588 |
| GsuI | CTGGAG | 1 cut(s) | 803 |
| HaeII | RGCGCY | 2 cut(s) | 1077, 1303 |
| HaeIII | GGCC | 3 cut(s) | 451, 583, 753 |
| HapII | CCGG | 3 cut(s) | 147, 589, 1005 |
| HgaI | GACGC | 2 cut(s) | 333, 345 |
| HhaI | GCGC | 2 cut(s) | 1076, 1302 |
| Hin1II | CATG | 4 cut(s) | 35, 133, 226, 524 |
| Hin6I | GCGC | 2 cut(s) | 1074, 1300 |
| HinP1I | GCGC | 2 cut(s) | 1074, 1300 |
| HincII | GTYRAC | 1 cut(s) | 496 |
| HindII | GTYRAC | 1 cut(s) | 496 |
| HinfI | GANTC | 3 cut(s) | 479, 778, 1289 |
| HpaII | CCGG | 3 cut(s) | 147, 589, 1005 |
| HphI | GGTGA | 2 cut(s) | 358, 1202 |
| Hpy166II | GTNNAC | 2 cut(s) | 360, 496 |
| Hpy188I | TCNGA | 2 cut(s) | 484, 954 |
| Hpy188III | TCNNGA | 7 cut(s) | 97, 130, 521, 550, 759, 782, 1326 |
| Hpy8I | GTNNAC | 2 cut(s) | 360, 496 |
| HpyAV | CCTTC | 2 cut(s) | 247, 765 |
| HpyCH4III | ACNGT | 6 cut(s) | 241, 364, 409, 1190, 1234, 1274 |
| HpyCH4IV | ACGT | 2 cut(s) | 473, 803 |
| HpyCH4V | TGCA | 3 cut(s) | 197, 508, 845 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 188, 254 |
| HpyF3I | CTNAG | 1 cut(s) | 264 |
| HpySE526I | ACGT | 2 cut(s) | 473, 803 |
| Hsp92II | CATG | 4 cut(s) | 35, 133, 226, 524 |
| HspAI | GCGC | 2 cut(s) | 1074, 1300 |
| Ksp22I | TGATCA | 2 cut(s) | 126, 433 |
| LguI | GCTCTTC | 1 cut(s) | 47 |
| LmnI | GCTCC | 4 cut(s) | 22, 591, 784, 924 |
| Lsp1109I | GCAGC | 2 cut(s) | 939, 1164 |
| LweI | GCATC | 2 cut(s) | 699, 984 |
| MabI | ACCWGGT | 1 cut(s) | 704 |
| MaeI | CTAG | 6 cut(s) | 315, 723, 836, 1305, 1326, 1336 |
| MaeII | ACGT | 2 cut(s) | 473, 803 |
| MaeIII | GTNAC | 5 cut(s) | 142, 364, 374, 409, 1190 |
| MboII | GAAGA | 3 cut(s) | 34, 1014, 1194 |
| MflI | RGATCY | 1 cut(s) | 184 |
| MhlI | GDGCHC | 5 cut(s) | 157, 585, 596, 674, 860 |
| MluCI | AATT | 4 cut(s) | 814, 874, 1066, 1078 |
| MlyI | GAGTC | 2 cut(s) | 473, 1283 |
| MmeI | TCCRAC | 2 cut(s) | 325, 843 |
| MroXI | GAANNNNTTC | 1 cut(s) | 41 |
| MseI | TTAA | 4 cut(s) | 8, 284, 381, 938 |
| MslI | CAYNNNNRTG | 1 cut(s) | 695 |
| MspI | CCGG | 3 cut(s) | 147, 589, 1005 |
| MspR9I | CCNGG | 8 cut(s) | 61, 321, 579, 621, 706, 789, 1006, 1224 |
| MvaI | CCWGG | 7 cut(s) | 61, 321, 579, 621, 706, 789, 1224 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 188, 254 |
| NciI | CCSGG | 1 cut(s) | 1006 |
| NlaIII | CATG | 4 cut(s) | 35, 133, 226, 524 |
| NlaIV | GGNNCC | 6 cut(s) | 24, 186, 310, 583, 593, 786 |
| NmuCI | GTSAC | 4 cut(s) | 364, 374, 409, 1190 |
| PagI | TCATGA | 2 cut(s) | 129, 520 |
| PasI | CCCWGGG | 1 cut(s) | 578 |
| PciSI | GCTCTTC | 1 cut(s) | 47 |
| PdmI | GAANNNNTTC | 1 cut(s) | 41 |
| PfeI | GAWTC | 1 cut(s) | 778 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 32, 806 |
| PfoI | TCCNGGA | 2 cut(s) | 319, 1222 |
| PinAI | ACCGGT | 1 cut(s) | 146 |
| PkrI | GCNGC | 3 cut(s) | 236, 929, 1154 |
| PleI | GAGTC | 2 cut(s) | 473, 1283 |
| PpsI | GAGTC | 2 cut(s) | 473, 1283 |
| Ppu21I | YACGTR | 1 cut(s) | 474 |
| PsiI | TTATAA | 1 cut(s) | 663 |
| Psp6I | CCWGG | 7 cut(s) | 59, 319, 577, 619, 704, 787, 1222 |
| PspFI | CCCAGC | 1 cut(s) | 584 |
| PspGI | CCWGG | 7 cut(s) | 59, 319, 577, 619, 704, 787, 1222 |
| PspN4I | GGNNCC | 6 cut(s) | 24, 186, 310, 583, 593, 786 |
| PspOMI | GGGCCC | 1 cut(s) | 581 |
| PspPI | GGNCC | 4 cut(s) | 581, 582, 627, 752 |
| PstNI | CAGNNNCTG | 1 cut(s) | 413 |
| PsuI | RGATCY | 1 cut(s) | 184 |
| RsaI | GTAC | 3 cut(s) | 389, 1003, 1265 |
| RsaNI | GTAC | 3 cut(s) | 388, 1002, 1264 |
| RseI | CAYNNNNRTG | 1 cut(s) | 695 |
| SapI | GCTCTTC | 1 cut(s) | 47 |
| SaqAI | TTAA | 4 cut(s) | 8, 284, 381, 938 |
| SatI | GCNGC | 3 cut(s) | 235, 928, 1153 |
| Sau96I | GGNCC | 4 cut(s) | 581, 582, 627, 752 |
| ScaI | AGTACT | 1 cut(s) | 389 |
| SchI | GAGTC | 2 cut(s) | 473, 1283 |
| ScrFI | CCNGG | 8 cut(s) | 61, 321, 579, 621, 706, 789, 1006, 1224 |
| SduI | GDGCHC | 5 cut(s) | 157, 585, 596, 674, 860 |
| SexAI | ACCWGGT | 1 cut(s) | 704 |
| SfaNI | GCATC | 2 cut(s) | 699, 984 |
| SfcI | CTRYAG | 1 cut(s) | 613 |
| SinI | GGWCC | 1 cut(s) | 627 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 695 |
| SmlI | CTYRAG | 1 cut(s) | 83 |
| SmoI | CTYRAG | 1 cut(s) | 83 |
| SnaBI | TACGTA | 1 cut(s) | 474 |
| Sse9I | AATT | 4 cut(s) | 814, 874, 1066, 1078 |
| SsiI | CCGC | 3 cut(s) | 182, 235, 735 |
| SspI | AATATT | 1 cut(s) | 92 |
| SspMI | CTAG | 6 cut(s) | 315, 723, 836, 1305, 1326, 1336 |
| StyD4I | CCNGG | 8 cut(s) | 59, 319, 577, 619, 704, 787, 1004, 1222 |
| TaaI | ACNGT | 6 cut(s) | 241, 364, 409, 1190, 1234, 1274 |
| TaiI | ACGT | 2 cut(s) | 476, 806 |
| TaqI | TCGA | 4 cut(s) | 228, 397, 989, 1321 |
| TasI | AATT | 4 cut(s) | 814, 874, 1066, 1078 |
| TatI | WGTACW | 1 cut(s) | 387 |
| TauI | GCSGC | 1 cut(s) | 237 |
| TfiI | GAWTC | 1 cut(s) | 778 |
| Tru1I | TTAA | 4 cut(s) | 8, 284, 381, 938 |
| Tru9I | TTAA | 4 cut(s) | 8, 284, 381, 938 |
| TscAI | CASTG | 2 cut(s) | 246, 418 |
| TseFI | GTSAC | 4 cut(s) | 364, 374, 409, 1190 |
| TseI | GCWGC | 2 cut(s) | 927, 1152 |
| Tsp45I | GTSAC | 4 cut(s) | 364, 374, 409, 1190 |
| TspDTI | ATGAA | 4 cut(s) | 34, 509, 537, 791 |
| TspRI | CASTG | 2 cut(s) | 246, 418 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 32, 806 |
| VpaK11BI | GGWCC | 1 cut(s) | 627 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 600 |
| XbaI | TCTAGA | 1 cut(s) | 1325 |
| XmnI | GAANNNNTTC | 1 cut(s) | 41 |
| XspI | CTAG | 6 cut(s) | 315, 723, 836, 1305, 1326, 1336 |
| ZrmI | AGTACT | 1 cut(s) | 389 |