pycom03g14230

Heterogeneous nuclear ribonucleoprotein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
15555686 .. 15557523
1838 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g14230.4

Sequence Viewer

Length: 1338 bp
ATGTCTTTAATAAAAAAGATGGAGCCAGATCATGGGAAGCTCTTCATTGGTGGGATTTCCTGGGACACAGATGAGGAACGGCTCAAGGAATATTTCAGGAAGTATGGAGAGGTGGTGGAGGCTGTGATCATGAGGGATCGTGTAACCGGTCGTGCTCGTGGTTTCGGGTTTGTTGTCTTTGCGGATCCTGCTGTTGCAGAAAGAGTAGTTATGGATAAGCACATGATCGATTGCCGCACAGTGGAAGCAAAGAAGGCTGTTCCTAAGGAGGATCAGCACATTTTAAACAGAACTGGGGTTGTCAATGGTTCCCCTAGTCCTGGACGCACAAAAAAGATTTTTGTTGGAGGTTTAGCGTCCACAGTCACCGAGAGTGACTTTAAGAAGTACTTTGATCGATTTGGCACAGTCACTGATGTTGTAGTAATGTATGATCACAACACACAAAGGCCAAGAGGCTTTGGATTTATTACGTATGACTCGGAGGAGGCTGTTGACAGAGTTCTGCATAAAACATTTCATGAACTCAATGGTAAGATGGTTGAGGTCAAGAGGGCAGTCCCTAAAGGGCTATCCCCAGGGCCCAGCCGGAGCCCTATGATAGGACACAACTATAGTCCAGGTAGGACCAATAGTTTCCTCAACAGCTATGCTCAAAGTTATAATATGAGCCCGATTGGAGGTTTCGGCATCAGTATGGACACCAGGTTCAGTCCAATCTCTAGTGGTCGTAGCGGGTTGTCTCCATTTGGCCCTTCTGGATATGGATTAGGTATGAATCTGGAGCCAGGGTTGAGACCAACGTATGGTGGTAATTCCAACTTTGGCAGTAGTCTAGGATATGCACGAATGTTGAGCCCCTTTTATAGTGGCAATTCAAACAGGTATAATACCCCTATTGGATATAATGTGGGTAATGGGAGGAGCAGCCCTGTATTAAACACAACTACTCGGAATGTCTGGGGAAATAACGGCATCAACAATAACTCGAACCCTGCCAGTACCGGGGCTTACTTGAACTCTTCAAATGGAGGTTTTGAAGTTGCGATTGGAAATAATGGCTCAAATTGGGGCGCTAATTCTTTTACAACTGAAAGTAGAGGCATTGCTTCGGGCTATAATAGTGCTAATGGTTATGGAAGTGGAAGTAGCAGCTTTGGATTGGGAGGGGGAGGATATGGAAGAAACGGTGACACTTGTGTAGCCCCTACATCATCATTTCCTGGATCAACTGTTGGTTATGAGGGGTCTTATGGCGACTTGTACCAGAACGGTTCAGTTTATGGCGACTCAACTTGGCGCTCTAGCAGTCCTTTGGATCGATCTAGATGGTTCTAG

Protein Analysis

446

Amino Acids

48.0

Weight (kDa)

9.31

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 663
AccB7I CCANNNNNTGG 2 cut(s) 32, 806
AciI CCGC 3 cut(s) 182, 235, 735
AclWI GGATC 6 cut(s) 144, 179, 192, 279, 1234, 1326
AfaI GTAC 3 cut(s) 389, 1003, 1265
AfiI CCNNNNNNNGG 7 cut(s) 32, 241, 320, 602, 680, 806, 1005
AgeI ACCGGT 1 cut(s) 146
AgsI TTSAA 4 cut(s) 879, 1018, 1026, 1040
AjnI CCWGG 7 cut(s) 59, 319, 577, 619, 704, 787, 1222
AjuI GAANNNNNNNTTGG 2 cut(s) 1032, 1064
AloI GAACNNNNNNTCC 2 cut(s) 692, 724
AluBI AGCT 3 cut(s) 40, 648, 1155
AluI AGCT 3 cut(s) 40, 648, 1155
Alw21I GWGCWC 1 cut(s) 157
Alw26I GTCTC 2 cut(s) 747, 790
AlwI GGATC 6 cut(s) 144, 179, 192, 279, 1234, 1326
AlwNI CAGNNNCTG 1 cut(s) 413
AoxI GGCC 3 cut(s) 449, 581, 751
ApaI GGGCCC 1 cut(s) 585
ApeKI GCWGC 2 cut(s) 927, 1152
AsiGI ACCGGT 1 cut(s) 146
Asp700I GAANNNNTTC 1 cut(s) 41
AspLEI GCGC 2 cut(s) 1076, 1302
AspS9I GGNCC 4 cut(s) 581, 582, 627, 752
AsuC2I CCSGG 1 cut(s) 1006
AsuHPI GGTGA 2 cut(s) 358, 1202
AvaII GGWCC 1 cut(s) 627
AxyI CCTNAGG 1 cut(s) 264
BaeGI GKGCMC 1 cut(s) 585
BamHI GGATCC 1 cut(s) 184
BanII GRGCYC 4 cut(s) 585, 596, 674, 860
BauI CACGAG 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 157
BbvI GCAGC 2 cut(s) 939, 1164
BccI CCATC 3 cut(s) 13, 532, 1323
BceAI ACGGC 2 cut(s) 95, 988
BciT130I CCWGG 7 cut(s) 61, 321, 579, 621, 706, 789, 1224
BclI TGATCA 2 cut(s) 126, 433
BcnI CCSGG 1 cut(s) 1006
BcoDI GTCTC 2 cut(s) 747, 790
BfaI CTAG 6 cut(s) 315, 723, 836, 1305, 1326, 1336
BfmI CTRYAG 1 cut(s) 613
BfoI RGCGCY 2 cut(s) 1077, 1303
BisI GCNGC 3 cut(s) 235, 928, 1153
BlsI GCNGC 3 cut(s) 236, 929, 1154
BmcAI AGTACT 1 cut(s) 389
Bme1390I CCNGG 8 cut(s) 61, 321, 579, 621, 706, 789, 1006, 1224
Bme18I GGWCC 1 cut(s) 627
BmgT120I GGNCC 4 cut(s) 581, 582, 627, 752
BmiI GGNNCC 6 cut(s) 24, 186, 310, 583, 593, 786
BmrFI CCNGG 8 cut(s) 61, 321, 579, 621, 706, 789, 1006, 1224
BmrI ACTGGG 1 cut(s) 303
BmsI GCATC 2 cut(s) 699, 984
BmuI ACTGGG 1 cut(s) 303
BpmI CTGGAG 1 cut(s) 803
BpuEI CTTGAG 1 cut(s) 68
BpuMI CCSGG 1 cut(s) 1006
Bsa29I ATCGAT 3 cut(s) 228, 397, 1321
BsaAI YACGTR 1 cut(s) 474
BsaI GGTCTC 1 cut(s) 790
BsaJI CCNNGG 5 cut(s) 60, 577, 578, 788, 1005
BsaWI WCCGGW 1 cut(s) 146
BsaXI ACNNNNNCTCC 4 cut(s) 99, 129, 776, 806
Bsc4I CCNNNNNNNGG 7 cut(s) 32, 241, 320, 602, 680, 806, 1005
Bse118I RCCGGY 1 cut(s) 146
Bse1I ACTGG 2 cut(s) 298, 999
Bse21I CCTNAGG 1 cut(s) 264
Bse3DI GCAATG 1 cut(s) 1104
BseBI CCWGG 7 cut(s) 61, 321, 579, 621, 706, 789, 1224
BseCI ATCGAT 3 cut(s) 228, 397, 1321
BseDI CCNNGG 5 cut(s) 60, 577, 578, 788, 1005
BseLI CCNNNNNNNGG 7 cut(s) 32, 241, 320, 602, 680, 806, 1005
BseMI GCAATG 1 cut(s) 1104
BseNI ACTGG 2 cut(s) 298, 999
BseRI GAGGAG 2 cut(s) 500, 937
BseSI GKGCMC 1 cut(s) 585
BseXI GCAGC 2 cut(s) 939, 1164
BseYI CCCAGC 1 cut(s) 584
Bsh1285I CGRYCG 1 cut(s) 151
BshFI GGCC 3 cut(s) 451, 583, 753
BshTI ACCGGT 1 cut(s) 146
BshVI ATCGAT 3 cut(s) 228, 397, 1321
BsiEI CGRYCG 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 157
BsiSI CCGG 3 cut(s) 147, 589, 1005
BslFI GGGAC 2 cut(s) 77, 545
BslI CCNNNNNNNGG 7 cut(s) 32, 241, 320, 602, 680, 806, 1005
BsmAI GTCTC 2 cut(s) 747, 790
BsmFI GGGAC 2 cut(s) 77, 545
BsnI GGCC 3 cut(s) 451, 583, 753
Bso31I GGTCTC 1 cut(s) 790
Bsp120I GGGCCC 1 cut(s) 581
Bsp1286I GDGCHC 5 cut(s) 157, 585, 596, 674, 860
BspACI CCGC 3 cut(s) 182, 235, 735
BspANI GGCC 3 cut(s) 451, 583, 753
BspDI ATCGAT 3 cut(s) 228, 397, 1321
BspHI TCATGA 2 cut(s) 129, 520
BspLI GGNNCC 6 cut(s) 24, 186, 310, 583, 593, 786
BspPI GGATC 6 cut(s) 144, 179, 192, 279, 1234, 1326
BspQI GCTCTTC 1 cut(s) 47
BspTNI GGTCTC 1 cut(s) 790
BsrDI GCAATG 1 cut(s) 1104
BsrFI RCCGGY 1 cut(s) 146
BsrI ACTGG 2 cut(s) 298, 999
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 5 cut(s) 60, 577, 578, 788, 1005
BssSI CACGAG 1 cut(s) 156
Bst2BI CACGAG 1 cut(s) 156
Bst2UI CCWGG 7 cut(s) 61, 321, 579, 621, 706, 789, 1224
Bst4CI ACNGT 6 cut(s) 241, 364, 409, 1190, 1234, 1274
Bst6I CTCTTC 2 cut(s) 47, 1027
BstBAI YACGTR 1 cut(s) 474
BstDEI CTNAG 1 cut(s) 264
BstENI CCTNNNNNAGG 1 cut(s) 600
BstH2I RGCGCY 2 cut(s) 1077, 1303
BstHHI GCGC 2 cut(s) 1076, 1302
BstMAI GTCTC 2 cut(s) 747, 790
BstMCI CGRYCG 1 cut(s) 151
BstMWI GCNNNNNNNGC 2 cut(s) 188, 254
BstNI CCWGG 7 cut(s) 61, 321, 579, 621, 706, 789, 1224
BstSCI CCNGG 8 cut(s) 59, 319, 577, 619, 704, 787, 1004, 1222
BstSFI CTRYAG 1 cut(s) 613
BstSLI GKGCMC 1 cut(s) 585
BstSNI TACGTA 1 cut(s) 474
BstV1I GCAGC 2 cut(s) 939, 1164
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
Bsu15I ATCGAT 3 cut(s) 228, 397, 1321
Bsu36I CCTNAGG 1 cut(s) 264
BsuRI GGCC 3 cut(s) 451, 583, 753
BsuTUI ATCGAT 3 cut(s) 228, 397, 1321
BtsIMutI CAGTG 2 cut(s) 246, 411
CaiI CAGNNNCTG 1 cut(s) 413
CciI TCATGA 2 cut(s) 129, 520
CfoI GCGC 2 cut(s) 1076, 1302
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 4 cut(s) 581, 582, 627, 752
ClaI ATCGAT 3 cut(s) 228, 397, 1321
CseI GACGC 2 cut(s) 333, 345
CsiI ACCWGGT 1 cut(s) 704
Csp6I GTAC 3 cut(s) 388, 1002, 1264
CspAI ACCGGT 1 cut(s) 146
CviAII CATG 4 cut(s) 32, 130, 223, 521
CviQI GTAC 3 cut(s) 388, 1002, 1264
DdeI CTNAG 1 cut(s) 264
DraI TTTAAA 1 cut(s) 285
Eam1104I CTCTTC 2 cut(s) 47, 1027
EarI CTCTTC 2 cut(s) 47, 1027
Eco105I TACGTA 1 cut(s) 474
Eco24I GRGCYC 4 cut(s) 585, 596, 674, 860
Eco31I GGTCTC 1 cut(s) 790
Eco47I GGWCC 1 cut(s) 627
Eco81I CCTNAGG 1 cut(s) 264
EcoNI CCTNNNNNAGG 1 cut(s) 600
EcoO109I RGGNCCY 1 cut(s) 581
EcoRII CCWGG 7 cut(s) 59, 319, 577, 619, 704, 787, 1222
EcoT38I GRGCYC 4 cut(s) 585, 596, 674, 860
FaeI CATG 4 cut(s) 35, 133, 226, 524
FalI AAGNNNNNCTT 2 cut(s) 374, 406
FaqI GGGAC 2 cut(s) 77, 545
FatI CATG 4 cut(s) 31, 129, 222, 520
FauI CCCGC 1 cut(s) 728
FbaI TGATCA 2 cut(s) 126, 433
Fnu4HI GCNGC 3 cut(s) 235, 928, 1153
FriOI GRGCYC 4 cut(s) 585, 596, 674, 860
Fsp4HI GCNGC 3 cut(s) 235, 928, 1153
FspBI CTAG 6 cut(s) 315, 723, 836, 1305, 1326, 1336
GlaI GCGC 2 cut(s) 1075, 1301
GluI GCNGC 3 cut(s) 235, 928, 1153
GsaI CCCAGC 1 cut(s) 588
GsuI CTGGAG 1 cut(s) 803
HaeII RGCGCY 2 cut(s) 1077, 1303
HaeIII GGCC 3 cut(s) 451, 583, 753
HapII CCGG 3 cut(s) 147, 589, 1005
HgaI GACGC 2 cut(s) 333, 345
HhaI GCGC 2 cut(s) 1076, 1302
Hin1II CATG 4 cut(s) 35, 133, 226, 524
Hin6I GCGC 2 cut(s) 1074, 1300
HinP1I GCGC 2 cut(s) 1074, 1300
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HinfI GANTC 3 cut(s) 479, 778, 1289
HpaII CCGG 3 cut(s) 147, 589, 1005
HphI GGTGA 2 cut(s) 358, 1202
Hpy166II GTNNAC 2 cut(s) 360, 496
Hpy188I TCNGA 2 cut(s) 484, 954
Hpy188III TCNNGA 7 cut(s) 97, 130, 521, 550, 759, 782, 1326
Hpy8I GTNNAC 2 cut(s) 360, 496
HpyAV CCTTC 2 cut(s) 247, 765
HpyCH4III ACNGT 6 cut(s) 241, 364, 409, 1190, 1234, 1274
HpyCH4IV ACGT 2 cut(s) 473, 803
HpyCH4V TGCA 3 cut(s) 197, 508, 845
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 254
HpyF3I CTNAG 1 cut(s) 264
HpySE526I ACGT 2 cut(s) 473, 803
Hsp92II CATG 4 cut(s) 35, 133, 226, 524
HspAI GCGC 2 cut(s) 1074, 1300
Ksp22I TGATCA 2 cut(s) 126, 433
LguI GCTCTTC 1 cut(s) 47
LmnI GCTCC 4 cut(s) 22, 591, 784, 924
Lsp1109I GCAGC 2 cut(s) 939, 1164
LweI GCATC 2 cut(s) 699, 984
MabI ACCWGGT 1 cut(s) 704
MaeI CTAG 6 cut(s) 315, 723, 836, 1305, 1326, 1336
MaeII ACGT 2 cut(s) 473, 803
MaeIII GTNAC 5 cut(s) 142, 364, 374, 409, 1190
MboII GAAGA 3 cut(s) 34, 1014, 1194
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 5 cut(s) 157, 585, 596, 674, 860
MluCI AATT 4 cut(s) 814, 874, 1066, 1078
MlyI GAGTC 2 cut(s) 473, 1283
MmeI TCCRAC 2 cut(s) 325, 843
MroXI GAANNNNTTC 1 cut(s) 41
MseI TTAA 4 cut(s) 8, 284, 381, 938
MslI CAYNNNNRTG 1 cut(s) 695
MspI CCGG 3 cut(s) 147, 589, 1005
MspR9I CCNGG 8 cut(s) 61, 321, 579, 621, 706, 789, 1006, 1224
MvaI CCWGG 7 cut(s) 61, 321, 579, 621, 706, 789, 1224
MwoI GCNNNNNNNGC 2 cut(s) 188, 254
NciI CCSGG 1 cut(s) 1006
NlaIII CATG 4 cut(s) 35, 133, 226, 524
NlaIV GGNNCC 6 cut(s) 24, 186, 310, 583, 593, 786
NmuCI GTSAC 4 cut(s) 364, 374, 409, 1190
PagI TCATGA 2 cut(s) 129, 520
PasI CCCWGGG 1 cut(s) 578
PciSI GCTCTTC 1 cut(s) 47
PdmI GAANNNNTTC 1 cut(s) 41
PfeI GAWTC 1 cut(s) 778
PflMI CCANNNNNTGG 2 cut(s) 32, 806
PfoI TCCNGGA 2 cut(s) 319, 1222
PinAI ACCGGT 1 cut(s) 146
PkrI GCNGC 3 cut(s) 236, 929, 1154
PleI GAGTC 2 cut(s) 473, 1283
PpsI GAGTC 2 cut(s) 473, 1283
Ppu21I YACGTR 1 cut(s) 474
PsiI TTATAA 1 cut(s) 663
Psp6I CCWGG 7 cut(s) 59, 319, 577, 619, 704, 787, 1222
PspFI CCCAGC 1 cut(s) 584
PspGI CCWGG 7 cut(s) 59, 319, 577, 619, 704, 787, 1222
PspN4I GGNNCC 6 cut(s) 24, 186, 310, 583, 593, 786
PspOMI GGGCCC 1 cut(s) 581
PspPI GGNCC 4 cut(s) 581, 582, 627, 752
PstNI CAGNNNCTG 1 cut(s) 413
PsuI RGATCY 1 cut(s) 184
RsaI GTAC 3 cut(s) 389, 1003, 1265
RsaNI GTAC 3 cut(s) 388, 1002, 1264
RseI CAYNNNNRTG 1 cut(s) 695
SapI GCTCTTC 1 cut(s) 47
SaqAI TTAA 4 cut(s) 8, 284, 381, 938
SatI GCNGC 3 cut(s) 235, 928, 1153
Sau96I GGNCC 4 cut(s) 581, 582, 627, 752
ScaI AGTACT 1 cut(s) 389
SchI GAGTC 2 cut(s) 473, 1283
ScrFI CCNGG 8 cut(s) 61, 321, 579, 621, 706, 789, 1006, 1224
SduI GDGCHC 5 cut(s) 157, 585, 596, 674, 860
SexAI ACCWGGT 1 cut(s) 704
SfaNI GCATC 2 cut(s) 699, 984
SfcI CTRYAG 1 cut(s) 613
SinI GGWCC 1 cut(s) 627
SmiMI CAYNNNNRTG 1 cut(s) 695
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
SnaBI TACGTA 1 cut(s) 474
Sse9I AATT 4 cut(s) 814, 874, 1066, 1078
SsiI CCGC 3 cut(s) 182, 235, 735
SspI AATATT 1 cut(s) 92
SspMI CTAG 6 cut(s) 315, 723, 836, 1305, 1326, 1336
StyD4I CCNGG 8 cut(s) 59, 319, 577, 619, 704, 787, 1004, 1222
TaaI ACNGT 6 cut(s) 241, 364, 409, 1190, 1234, 1274
TaiI ACGT 2 cut(s) 476, 806
TaqI TCGA 4 cut(s) 228, 397, 989, 1321
TasI AATT 4 cut(s) 814, 874, 1066, 1078
TatI WGTACW 1 cut(s) 387
TauI GCSGC 1 cut(s) 237
TfiI GAWTC 1 cut(s) 778
Tru1I TTAA 4 cut(s) 8, 284, 381, 938
Tru9I TTAA 4 cut(s) 8, 284, 381, 938
TscAI CASTG 2 cut(s) 246, 418
TseFI GTSAC 4 cut(s) 364, 374, 409, 1190
TseI GCWGC 2 cut(s) 927, 1152
Tsp45I GTSAC 4 cut(s) 364, 374, 409, 1190
TspDTI ATGAA 4 cut(s) 34, 509, 537, 791
TspRI CASTG 2 cut(s) 246, 418
Van91I CCANNNNNTGG 2 cut(s) 32, 806
VpaK11BI GGWCC 1 cut(s) 627
XagI CCTNNNNNAGG 1 cut(s) 600
XbaI TCTAGA 1 cut(s) 1325
XmnI GAANNNNTTC 1 cut(s) 41
XspI CTAG 6 cut(s) 315, 723, 836, 1305, 1326, 1336
ZrmI AGTACT 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.