Rorug05G0200500

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0008853
Physical Location & Seq
Forward (+)
19850117 .. 19851247
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0200500.1

Sequence Viewer

Length: 603 bp
ATGGCAGCTCACGATGATCCTCCTCCGGGCTACAGATTTAGACCTGACACAGAACAACTCCTTGTTCATTATCTTCGTCCCAAACTCGACGGAGAAGGCTTTCCCCAAGGGCTTGTTCCTTTCTGTGATCTTTATGGAGATCAAGAACCATGGCAGATATGGGAAGCTTTCAAAGAAACATCAGAGAAAGACCGAGAAAGAAAAGACCTTTATTTTCTTACCCAACACAAGAAGAAGACACCAAATGGCAAGCGCAAAAGCCGAACAGTCGGCGCGGGTACCTGGAAAGGCGAAGACGCCGCCAAAAAAGTACTTGTTGCTTCTCAAAGAGTTATTGGCAAGAGAAAAAGATTTCGTTACGATAACAAGGGCTCGGCGCAAAACGGTCGCTGGCTCATGCACGAGTTTGAACTTGATGCATCTTTACTGCGAAACAAACGTAAAGCAAAGGAGTATGTTCTTTGTATTCTTAGAAAGAACGATAAATCGGAGAAAGATCGGAAACAAGAAGGACAAGAGGATCAAGAAGAAGATGTGATGAGTTGCGACTATGGTGATCAAAAAGGTGGAAACCTTCATGAACCTGAGTTCGTTGAAGAATGA

Protein Analysis

200

Amino Acids

23.4

Weight (kDa)

8.29

Isoelectric Point (pI)

54.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 8 - 138 2.3e-29 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 278
AccB1I GGYRCC 1 cut(s) 278
AccII CGCG 1 cut(s) 275
AciI CCGC 2 cut(s) 275, 300
AclWI GGATC 2 cut(s) 11, 528
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 2 cut(s) 280, 312
AfiI CCNNNNNNNGG 1 cut(s) 26
AgsI TTSAA 3 cut(s) 172, 410, 596
AjnI CCWGG 1 cut(s) 281
AjuI GAANNNNNNNTTGG 2 cut(s) 99, 131
AluBI AGCT 2 cut(s) 8, 167
AluI AGCT 2 cut(s) 8, 167
AlwI GGATC 2 cut(s) 11, 528
ApeKI GCWGC 1 cut(s) 5
Asp700I GAANNNNTTC 1 cut(s) 99
Asp718I GGTACC 1 cut(s) 278
AspLEI GCGC 3 cut(s) 255, 275, 379
AsuC2I CCSGG 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 566
BanI GGYRCC 1 cut(s) 278
BanII GRGCYC 1 cut(s) 374
BauI CACGAG 1 cut(s) 401
BbsI GAAGAC 2 cut(s) 242, 300
BbvI GCAGC 1 cut(s) 17
BcgI CGANNNNNNTGC 2 cut(s) 368, 402
BciT130I CCWGG 1 cut(s) 283
BclI TGATCA 1 cut(s) 556
BcnI CCSGG 1 cut(s) 27
BfmI CTRYAG 1 cut(s) 31
BisI GCNGC 2 cut(s) 6, 300
BlsI GCNGC 2 cut(s) 7, 301
BmcAI AGTACT 1 cut(s) 312
Bme1390I CCNGG 2 cut(s) 27, 283
BmiI GGNNCC 1 cut(s) 280
BmrFI CCNGG 2 cut(s) 27, 283
BmsI GCATC 2 cut(s) 406, 428
BpiI GAAGAC 2 cut(s) 242, 300
BpuMI CCSGG 1 cut(s) 27
BsaHI GRCGYC 1 cut(s) 297
BsaJI CCNNGG 2 cut(s) 106, 149
Bsc4I CCNNNNNNNGG 1 cut(s) 26
BseBI CCWGG 1 cut(s) 283
BseDI CCNNGG 2 cut(s) 106, 149
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMII CTCAG 1 cut(s) 576
BseRI GAGGAG 1 cut(s) 12
BseXI GCAGC 1 cut(s) 17
Bsh1236I CGCG 1 cut(s) 275
Bsh1285I CGRYCG 1 cut(s) 388
BshNI GGYRCC 1 cut(s) 278
BsiEI CGRYCG 1 cut(s) 388
BsiSI CCGG 1 cut(s) 26
BslFI GGGAC 1 cut(s) 63
BslI CCNNNNNNNGG 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 374
Bsp143I GATC 6 cut(s) 16, 127, 139, 496, 520, 556
Bsp19I CCATGG 1 cut(s) 149
BspACI CCGC 2 cut(s) 275, 300
BspCNI CTCAG 1 cut(s) 577
BspFNI CGCG 1 cut(s) 275
BspHI TCATGA 1 cut(s) 577
BspLI GGNNCC 1 cut(s) 280
BspPI GGATC 2 cut(s) 11, 528
BspT107I GGYRCC 1 cut(s) 278
BssECI CCNNGG 2 cut(s) 106, 149
BssMI GATC 6 cut(s) 16, 127, 139, 496, 520, 556
BssNI GRCGYC 1 cut(s) 297
BssSI CACGAG 1 cut(s) 401
BssT1I CCWWGG 2 cut(s) 106, 149
Bst2BI CACGAG 1 cut(s) 401
Bst2UI CCWGG 1 cut(s) 283
Bst4CI ACNGT 2 cut(s) 268, 386
BstACI GRCGYC 1 cut(s) 297
BstC8I GCNNGC 2 cut(s) 251, 392
BstDEI CTNAG 2 cut(s) 470, 585
BstDSI CCRYGG 1 cut(s) 149
BstFNI CGCG 1 cut(s) 275
BstHHI GCGC 3 cut(s) 255, 275, 379
BstKTI GATC 6 cut(s) 19, 130, 142, 499, 523, 559
BstMBI GATC 6 cut(s) 16, 127, 139, 496, 520, 556
BstMCI CGRYCG 1 cut(s) 388
BstNI CCWGG 1 cut(s) 283
BstSCI CCNGG 2 cut(s) 25, 281
BstSFI CTRYAG 1 cut(s) 31
BstUI CGCG 1 cut(s) 275
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 2 cut(s) 242, 300
BtgI CCRYGG 1 cut(s) 149
Cac8I GCNNGC 2 cut(s) 251, 392
CciI TCATGA 1 cut(s) 577
CfoI GCGC 3 cut(s) 255, 275, 379
CseI GACGC 1 cut(s) 305
Csp6I GTAC 2 cut(s) 279, 311
CviAII CATG 3 cut(s) 150, 397, 578
CviJI RGCY 8 cut(s) 8, 30, 99, 112, 167, 261, 372, 394
CviKI_1 RGCY 8 cut(s) 8, 30, 99, 112, 167, 261, 372, 394
CviQI GTAC 2 cut(s) 279, 311
DdeI CTNAG 2 cut(s) 470, 585
DpnI GATC 6 cut(s) 18, 129, 141, 498, 522, 558
DpnII GATC 6 cut(s) 16, 127, 139, 496, 520, 556
Eco130I CCWWGG 2 cut(s) 106, 149
Eco24I GRGCYC 1 cut(s) 374
EcoRII CCWGG 1 cut(s) 281
EcoT14I CCWWGG 2 cut(s) 106, 149
EcoT22I ATGCAT 1 cut(s) 421
EcoT38I GRGCYC 1 cut(s) 374
ErhI CCWWGG 2 cut(s) 106, 149
FaeI CATG 3 cut(s) 153, 400, 581
FaiI YATR 7 cut(s) 135, 151, 160, 398, 456, 552, 579
FaqI GGGAC 1 cut(s) 63
FatI CATG 3 cut(s) 149, 396, 577
FauI CCCGC 1 cut(s) 268
FbaI TGATCA 1 cut(s) 556
Fnu4HI GCNGC 2 cut(s) 6, 300
FriOI GRGCYC 1 cut(s) 374
Fsp4HI GCNGC 2 cut(s) 6, 300
GlaI GCGC 3 cut(s) 254, 274, 378
GluI GCNGC 2 cut(s) 6, 300
HapII CCGG 1 cut(s) 26
HgaI GACGC 1 cut(s) 305
HhaI GCGC 3 cut(s) 255, 275, 379
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 3 cut(s) 153, 400, 581
Hin6I GCGC 3 cut(s) 253, 273, 377
HinP1I GCGC 3 cut(s) 253, 273, 377
HindIII AAGCTT 1 cut(s) 165
HpaII CCGG 1 cut(s) 26
HphI GGTGA 1 cut(s) 566
Hpy188I TCNGA 3 cut(s) 184, 490, 501
Hpy188III TCNNGA 4 cut(s) 11, 143, 524, 578
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 3 cut(s) 89, 503, 584
HpyCH4III ACNGT 2 cut(s) 268, 386
HpyCH4IV ACGT 1 cut(s) 439
HpyCH4V TGCA 2 cut(s) 400, 419
HpyF3I CTNAG 2 cut(s) 470, 585
HpySE526I ACGT 1 cut(s) 439
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 3 cut(s) 153, 400, 581
HspAI GCGC 3 cut(s) 253, 273, 377
KpnI GGTACC 1 cut(s) 282
Ksp22I TGATCA 1 cut(s) 556
Kzo9I GATC 6 cut(s) 16, 127, 139, 496, 520, 556
LpnPI CCDG 6 cut(s) 39, 57, 268, 295, 376, 597
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 2 cut(s) 406, 428
MaeII ACGT 1 cut(s) 439
MaeIII GTNAC 1 cut(s) 356
MalI GATC 6 cut(s) 18, 129, 141, 498, 522, 558
MboI GATC 6 cut(s) 16, 127, 139, 496, 520, 556
MboII GAAGA 6 cut(s) 65, 244, 247, 305, 539, 542
MhlI GDGCHC 1 cut(s) 374
MnlI CCTC 3 cut(s) 30, 33, 511
Mph1103I ATGCAT 1 cut(s) 421
MroXI GAANNNNTTC 1 cut(s) 99
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 2 cut(s) 27, 283
MvaI CCWGG 1 cut(s) 283
MvnI CGCG 1 cut(s) 275
NciI CCSGG 1 cut(s) 27
NcoI CCATGG 1 cut(s) 149
NdeII GATC 6 cut(s) 16, 127, 139, 496, 520, 556
NlaIII CATG 3 cut(s) 153, 400, 581
NlaIV GGNNCC 1 cut(s) 280
NmeAIII GCCGAG 1 cut(s) 353
NsiI ATGCAT 1 cut(s) 421
PagI TCATGA 1 cut(s) 577
PdmI GAANNNNTTC 1 cut(s) 99
PkrI GCNGC 2 cut(s) 7, 301
Psp6I CCWGG 1 cut(s) 281
PspGI CCWGG 1 cut(s) 281
PspN4I GGNNCC 1 cut(s) 280
RsaI GTAC 2 cut(s) 280, 312
RsaNI GTAC 2 cut(s) 279, 311
SatI GCNGC 2 cut(s) 6, 300
Sau3AI GATC 6 cut(s) 16, 127, 139, 496, 520, 556
ScaI AGTACT 1 cut(s) 312
ScrFI CCNGG 2 cut(s) 27, 283
SduI GDGCHC 1 cut(s) 374
SetI ASST 9 cut(s) 10, 46, 169, 210, 284, 442, 568, 576, 586
SfaNI GCATC 2 cut(s) 406, 428
SfcI CTRYAG 1 cut(s) 31
SsiI CCGC 2 cut(s) 275, 300
StyD4I CCNGG 2 cut(s) 25, 281
StyI CCWWGG 2 cut(s) 106, 149
TaaI ACNGT 2 cut(s) 268, 386
TaiI ACGT 1 cut(s) 442
TaqI TCGA 1 cut(s) 87
TaqII GACCGA 1 cut(s) 207
TatI WGTACW 1 cut(s) 310
TauI GCSGC 1 cut(s) 302
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 3 cut(s) 56, 566, 594
TspGWI ACGGA 1 cut(s) 105
XcmI CCANNNNNNNNNTGG 1 cut(s) 156
XmnI GAANNNNTTC 1 cut(s) 99
ZrmI AGTACT 1 cut(s) 312
Zsp2I ATGCAT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.