Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0008853

Physical Location & Seq

Genomic Coordinates Reverse (-)

37005529 .. 37009146

Gene Structure 3618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG291200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGCTAAACAGAACTGGGGGTGCACATAGTTCTCCTGGTCCTGGACGCACGAGAAAGATCTTTGTTGGGGGTTTAGCATCCACAGTCACCGAGAATGACTTTAAGACATACTTTGATCAGTTTGGTACTGTCACTGATGTCGTAGTAATGTATGATCACAACACCCAAAGGCCTAGAGGCTTTGGCTTTATCACTTATGACTCGGAGGACGCAGTGGACAGAGTTCTGCATAAAACATTCCATGAACTCAATGGTAAGATGGTTGAGGTCAAGAGGGCAGTCCCCAAAGAGCAATCCCCAGGGCCCCTCCGGAGCCCTCAGATAGGATACAACTATAGTCCAGGTAGGGCCAATAACTTACTTAACAGTTATGCTCAGGGTTATAATATGAGCCTAGTTGGGGGCTTTGGTGTCGGTATGGATAACAGGTTCAATCCAATTTCTAGTGGTCGTAGTGGGTTTTCTCCAATTGGCACTAATAGATATGGAATGGGTATGAATTTGGAGCCAGGGTTGAGCTCAAGCTATGGTGGGAATTCCAACTTCGGTAATAGTCTAGGATATGCACTGATGTTGAGCCCCACTTATAATGGCAACTCAAACAGGTACACTAATCCTATTGGATATAATGCCGGTAATGGAAGGACCACCTCTCTAGTAAACTCACCTACTCGGAATGTCTGGGGAAACAGTGGCATCAACAATGCCATGAATCCTGGCAGTACTGCAGCTTACTTGAGCTCTGCAAATGGGGGGTTTGGCATTAGTGGTTCGACTTTGGGCCCCAGTTCTTTTTCAACTCAAGGTAGAGGGACTTTATCTGGCTTTACTAGTCCCAGTAATTATAGGAATGGAGGTAACAGCTATGGGTTTGAAGGAGCAGGTTATGGAAGAATCAATGGCACTGGTATATCCCCAACATCATCATTTCCTACATCAACTGCTGGTTATGAGGGGTCTTATGGGGACTTCTACCATAGTGGTTCAGTTCATGGTGATTCAACTTGGCGCTCCACCACTCCTGAGCTAGATGGTTCTAGTACATTTAGTTATGGTCTGGGCGATATTGCCCCAGGTGCCACAGCCAGTAATTCTCAGGATTATTCTCAGGATTACATTGGAAGCTACAGTGTGACCAGTAGACAACCAAATAGAGGTAACACTCCTGACTTCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005844 GO:0008150 GO:0008187 GO:0008266 GO:0009987 GO:0030154 GO:0032502 GO:0032991 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048863 GO:0048864 GO:0048869 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

392

Amino Acids

41.44

Weight (kDa)

8.86

Isoelectric Point (pI)

33.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_7	PF16367	18 - 90	2.7e-07	RNA recognition motif
RRM_1	PF00076	20 - 77	3.8e-15	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008853)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23960 FvH4_3g23960 FvH4_3g23960
malus_domestica	MD03G1189400.v1.1 MD11G1205500.v1.1
prunus_persica	Prupe.4G231900_v2.0.a1 Prupe.4G231900_v2.0.a1 Prupe.4G231900_v2.0.a1 Prupe.4G231900_v2.0.a1 Prupe.4G231900_v2.0.a1
pyrus_communis	pycom03g14230 pycom11g17830
rosa_chinensis	RchiOBHm_Chr5g0042461
rosa_laevigata	RLG00000034128
rosa_multiflora	Rmu_sc0002779.1_g000004
rosa_roxburghii	Rroxscaffold_1G00038230
rosa_rugosa	Rorug05G0200400 Rorug05G0200500
rosa_samantha	Rh5AG286600 Rh5BG291200 Rh5CG323300 Rh5DG300900
rosa_wichuraiana	Rw5G026620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	384, 588
Acc36I	ACCTGC	1 cut(s)	872
AccB1I	GGYRCC	1 cut(s)	1076
AccI	GTMKAC	1 cut(s)	1141
AccIII	TCCGGA	1 cut(s)	309
AcsI	RAATTY	2 cut(s)	499, 535
AfaI	GTAC	4 cut(s)	127, 608, 724, 1042
AfiI	CCNNNNNNNGG	4 cut(s)	41, 323, 400, 1154
AgsI	TTSAA	4 cut(s)	433, 798, 875, 1002
AhlI	ACTAGT	1 cut(s)	830
AjnI	CCWGG	7 cut(s)	34, 40, 298, 340, 508, 715, 1072
AloI	GAACNNNNNNTCC	2 cut(s)	413, 445
AluBI	AGCT	7 cut(s)	519, 525, 731, 741, 864, 1027, 1125
AluI	AGCT	7 cut(s)	519, 525, 731, 741, 864, 1027, 1125
Alw21I	GWGCWC	3 cut(s)	25, 521, 743
Alw44I	GTGCAC	1 cut(s)	21
Aor13HI	TCCGGA	1 cut(s)	309
AoxI	GGCC	4 cut(s)	170, 302, 348, 781
ApaI	GGGCCC	2 cut(s)	306, 785
ApaLI	GTGCAC	1 cut(s)	21
ApeKI	GCWGC	1 cut(s)	728
ApoI	RAATTY	2 cut(s)	499, 535
AspLEI	GCGC	1 cut(s)	1011
AspS9I	GGNCC	7 cut(s)	38, 302, 303, 348, 645, 781, 782
AsuHPI	GGTGA	3 cut(s)	79, 657, 1007
AvaII	GGWCC	2 cut(s)	38, 645
BaeGI	GKGCMC	3 cut(s)	25, 306, 785
BanI	GGYRCC	1 cut(s)	1076
BanII	GRGCYC	6 cut(s)	306, 317, 521, 581, 743, 785
BauI	CACGAG	1 cut(s)	49
Bbv12I	GWGCWC	3 cut(s)	25, 521, 743
BbvI	GCAGC	1 cut(s)	740
BccI	CCATC	2 cut(s)	253, 1025
BciT130I	CCWGG	7 cut(s)	36, 42, 300, 342, 510, 717, 1074
BciVI	GTATCC	1 cut(s)	320
BclI	TGATCA	2 cut(s)	115, 154
BcuI	ACTAGT	1 cut(s)	830
BfaI	CTAG	8 cut(s)	174, 395, 444, 557, 656, 831, 1028, 1038
BfmI	CTRYAG	3 cut(s)	334, 726, 1126
BfoI	RGCGCY	1 cut(s)	1012
BfuAI	ACCTGC	1 cut(s)	872
BfuI	GTATCC	1 cut(s)	320
BglII	AGATCT	1 cut(s)	57
BisI	GCNGC	1 cut(s)	729
BlsI	GCNGC	1 cut(s)	730
BmcAI	AGTACT	1 cut(s)	724
Bme1390I	CCNGG	7 cut(s)	36, 42, 300, 342, 510, 717, 1074
Bme18I	GGWCC	2 cut(s)	38, 645
BmgT120I	GGNCC	7 cut(s)	38, 302, 303, 348, 645, 781, 782
BmiI	GGNNCC	7 cut(s)	304, 305, 314, 507, 783, 784, 1078
BmrFI	CCNGG	7 cut(s)	36, 42, 300, 342, 510, 717, 1074
BmrI	ACTGGG	3 cut(s)	24, 780, 831
BmsI	GCATC	2 cut(s)	86, 705
BmuI	ACTGGG	3 cut(s)	24, 780, 831
Bpu10I	CCTNAGC	2 cut(s)	375, 1023
BpuEI	CTTGAG	3 cut(s)	505, 757, 786
BsaJI	CCNNGG	4 cut(s)	298, 299, 509, 1072
BsaWI	WCCGGW	1 cut(s)	309
BsaXI	ACNNNNNCTCC	2 cut(s)	497, 527
Bsc4I	CCNNNNNNNGG	4 cut(s)	41, 323, 400, 1154
Bse118I	RCCGGY	1 cut(s)	632
Bse1I	ACTGG	6 cut(s)	19, 786, 837, 910, 1086, 1137
BseAI	TCCGGA	1 cut(s)	309
BseBI	CCWGG	7 cut(s)	36, 42, 300, 342, 510, 717, 1074
BseDI	CCNNGG	4 cut(s)	298, 299, 509, 1072
BseGI	GGATG	1 cut(s)	77
BseLI	CCNNNNNNNGG	4 cut(s)	41, 323, 400, 1154
BseMII	CTCAG	5 cut(s)	332, 389, 1014, 1109, 1121
BseNI	ACTGG	6 cut(s)	19, 786, 837, 910, 1086, 1137
BseSI	GKGCMC	3 cut(s)	25, 306, 785
BseXI	GCAGC	1 cut(s)	740
BshFI	GGCC	4 cut(s)	172, 304, 350, 783
BshNI	GGYRCC	1 cut(s)	1076
BsiHKAI	GWGCWC	3 cut(s)	25, 521, 743
BsiSI	CCGG	2 cut(s)	310, 633
BslFI	GGGAC	4 cut(s)	266, 819, 826, 980
BslI	CCNNNNNNNGG	4 cut(s)	41, 323, 400, 1154
BsmFI	GGGAC	4 cut(s)	266, 819, 826, 980
BsnI	GGCC	4 cut(s)	172, 304, 350, 783
Bsp120I	GGGCCC	2 cut(s)	302, 781
Bsp1286I	GDGCHC	7 cut(s)	25, 306, 317, 521, 581, 743, 785
Bsp13I	TCCGGA	1 cut(s)	309
Bsp143I	GATC	3 cut(s)	57, 115, 154
BspANI	GGCC	4 cut(s)	172, 304, 350, 783
BspCNI	CTCAG	5 cut(s)	331, 388, 1015, 1108, 1120
BspEI	TCCGGA	1 cut(s)	309
BspLI	GGNNCC	7 cut(s)	304, 305, 314, 507, 783, 784, 1078
BspMAI	CTGCAG	1 cut(s)	730
BspMI	ACCTGC	1 cut(s)	872
BspT107I	GGYRCC	1 cut(s)	1076
BsrFI	RCCGGY	1 cut(s)	632
BsrI	ACTGG	6 cut(s)	19, 786, 837, 910, 1086, 1137
BssAI	RCCGGY	1 cut(s)	632
BssECI	CCNNGG	4 cut(s)	298, 299, 509, 1072
BssMI	GATC	3 cut(s)	57, 115, 154
BssSI	CACGAG	1 cut(s)	49
Bst2BI	CACGAG	1 cut(s)	49
Bst2UI	CCWGG	7 cut(s)	36, 42, 300, 342, 510, 717, 1074
Bst4CI	ACNGT	5 cut(s)	85, 130, 368, 692, 1130
BstDEI	CTNAG	5 cut(s)	318, 375, 1023, 1095, 1107
BstENI	CCTNNNNNAGG	1 cut(s)	321
BstF5I	GGATG	1 cut(s)	77
BstH2I	RGCGCY	1 cut(s)	1012
BstHHI	GCGC	1 cut(s)	1011
BstKTI	GATC	3 cut(s)	60, 118, 157
BstMBI	GATC	3 cut(s)	57, 115, 154
BstMWI	GCNNNNNNNGC	1 cut(s)	1076
BstNI	CCWGG	7 cut(s)	36, 42, 300, 342, 510, 717, 1074
BstSCI	CCNGG	7 cut(s)	34, 40, 298, 340, 508, 715, 1072
BstSFI	CTRYAG	3 cut(s)	334, 726, 1126
BstSLI	GKGCMC	3 cut(s)	25, 306, 785
BstV1I	GCAGC	1 cut(s)	740
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
BsuI	GTATCC	1 cut(s)	320
BsuRI	GGCC	4 cut(s)	172, 304, 350, 783
BtsCI	GGATG	1 cut(s)	77
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	6 cut(s)	132, 219, 566, 697, 903, 1135
BveI	ACCTGC	1 cut(s)	872
CfoI	GCGC	1 cut(s)	1011
Cfr10I	RCCGGY	1 cut(s)	632
Cfr13I	GGNCC	7 cut(s)	38, 302, 303, 348, 645, 781, 782
CseI	GACGC	2 cut(s)	54, 218
Csp6I	GTAC	4 cut(s)	126, 607, 723, 1041
CviAII	CATG	3 cut(s)	242, 709, 992
CviQI	GTAC	4 cut(s)	126, 607, 723, 1041
DdeI	CTNAG	5 cut(s)	318, 375, 1023, 1095, 1107
DpnI	GATC	3 cut(s)	59, 117, 156
DpnII	GATC	3 cut(s)	57, 115, 154
Ecl136II	GAGCTC	2 cut(s)	519, 741
Eco147I	AGGCCT	1 cut(s)	172
Eco24I	GRGCYC	6 cut(s)	306, 317, 521, 581, 743, 785
Eco47I	GGWCC	2 cut(s)	38, 645
Eco53kI	GAGCTC	2 cut(s)	519, 741
EcoICRI	GAGCTC	2 cut(s)	519, 741
EcoNI	CCTNNNNNAGG	1 cut(s)	321
EcoO109I	RGGNCCY	3 cut(s)	302, 303, 782
EcoRI	GAATTC	1 cut(s)	535
EcoRII	CCWGG	7 cut(s)	34, 40, 298, 340, 508, 715, 1072
EcoT38I	GRGCYC	6 cut(s)	306, 317, 521, 581, 743, 785
FaeI	CATG	3 cut(s)	245, 712, 995
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FaqI	GGGAC	4 cut(s)	266, 819, 826, 980
FatI	CATG	3 cut(s)	241, 708, 991
FbaI	TGATCA	2 cut(s)	115, 154
FblI	GTMKAC	1 cut(s)	1141
Fnu4HI	GCNGC	1 cut(s)	729
FokI	GGATG	1 cut(s)	64
FriOI	GRGCYC	6 cut(s)	306, 317, 521, 581, 743, 785
Fsp4HI	GCNGC	1 cut(s)	729
FspBI	CTAG	8 cut(s)	174, 395, 444, 557, 656, 831, 1028, 1038
GlaI	GCGC	1 cut(s)	1010
GluI	GCNGC	1 cut(s)	729
HaeII	RGCGCY	1 cut(s)	1012
HaeIII	GGCC	4 cut(s)	172, 304, 350, 783
HapII	CCGG	2 cut(s)	310, 633
HgaI	GACGC	2 cut(s)	54, 218
HhaI	GCGC	1 cut(s)	1011
Hin1II	CATG	3 cut(s)	245, 712, 995
Hin6I	GCGC	1 cut(s)	1009
HinP1I	GCGC	1 cut(s)	1009
HinfI	GANTC	4 cut(s)	200, 712, 894, 998
HpaII	CCGG	2 cut(s)	310, 633
HphI	GGTGA	3 cut(s)	79, 657, 1007
Hpy166II	GTNNAC	5 cut(s)	23, 217, 609, 661, 1142
Hpy188I	TCNGA	3 cut(s)	205, 321, 675
Hpy188III	TCNNGA	6 cut(s)	271, 310, 1022, 1097, 1109, 1166
Hpy8I	GTNNAC	5 cut(s)	23, 217, 609, 661, 1142
HpyAV	CCTTC	2 cut(s)	636, 869
HpyCH4III	ACNGT	5 cut(s)	85, 130, 368, 692, 1130
HpyCH4V	TGCA	5 cut(s)	23, 229, 566, 728, 746
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1076
HpyF3I	CTNAG	5 cut(s)	318, 375, 1023, 1095, 1107
Hsp92II	CATG	3 cut(s)	245, 712, 995
HspAI	GCGC	1 cut(s)	1009
Kpn2I	TCCGGA	1 cut(s)	309
Ksp22I	TGATCA	2 cut(s)	115, 154
Kzo9I	GATC	3 cut(s)	57, 115, 154
LmnI	GCTCC	4 cut(s)	312, 505, 878, 1016
Lsp1109I	GCAGC	1 cut(s)	740
LweI	GCATC	2 cut(s)	86, 705
MaeI	CTAG	8 cut(s)	174, 395, 444, 557, 656, 831, 1028, 1038
MaeIII	GTNAC	5 cut(s)	85, 130, 857, 1132, 1157
MalI	GATC	3 cut(s)	59, 117, 156
MboI	GATC	3 cut(s)	57, 115, 154
MboII	GAAGA	1 cut(s)	903
MfeI	CAATTG	1 cut(s)	468
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	7 cut(s)	25, 306, 317, 521, 581, 743, 785
MluCI	AATT	6 cut(s)	438, 468, 499, 535, 841, 1090
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	1 cut(s)	564
MroI	TCCGGA	1 cut(s)	309
MseI	TTAA	3 cut(s)	102, 363, 1177
MspI	CCGG	2 cut(s)	310, 633
MspR9I	CCNGG	7 cut(s)	36, 42, 300, 342, 510, 717, 1074
MunI	CAATTG	1 cut(s)	468
MvaI	CCWGG	7 cut(s)	36, 42, 300, 342, 510, 717, 1074
MwoI	GCNNNNNNNGC	1 cut(s)	1076
NdeII	GATC	3 cut(s)	57, 115, 154
NlaIII	CATG	3 cut(s)	245, 712, 995
NlaIV	GGNNCC	7 cut(s)	304, 305, 314, 507, 783, 784, 1078
NmuCI	GTSAC	3 cut(s)	85, 130, 1132
PasI	CCCWGGG	1 cut(s)	299
PceI	AGGCCT	1 cut(s)	172
PfeI	GAWTC	3 cut(s)	712, 894, 998
PfoI	TCCNGGA	1 cut(s)	40
PkrI	GCNGC	1 cut(s)	730
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
PsiI	TTATAA	2 cut(s)	384, 588
Psp124BI	GAGCTC	2 cut(s)	521, 743
Psp6I	CCWGG	7 cut(s)	34, 40, 298, 340, 508, 715, 1072
PspGI	CCWGG	7 cut(s)	34, 40, 298, 340, 508, 715, 1072
PspN4I	GGNNCC	7 cut(s)	304, 305, 314, 507, 783, 784, 1078
PspOMI	GGGCCC	2 cut(s)	302, 781
PspPI	GGNCC	7 cut(s)	38, 302, 303, 348, 645, 781, 782
PstI	CTGCAG	1 cut(s)	730
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	4 cut(s)	127, 608, 724, 1042
RsaNI	GTAC	4 cut(s)	126, 607, 723, 1041
SacI	GAGCTC	2 cut(s)	521, 743
SaqAI	TTAA	3 cut(s)	102, 363, 1177
SatI	GCNGC	1 cut(s)	729
Sau3AI	GATC	3 cut(s)	57, 115, 154
Sau96I	GGNCC	7 cut(s)	38, 302, 303, 348, 645, 781, 782
ScaI	AGTACT	1 cut(s)	724
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	7 cut(s)	36, 42, 300, 342, 510, 717, 1074
SduI	GDGCHC	7 cut(s)	25, 306, 317, 521, 581, 743, 785
SfaNI	GCATC	2 cut(s)	86, 705
SfcI	CTRYAG	3 cut(s)	334, 726, 1126
SinI	GGWCC	2 cut(s)	38, 645
SmlI	CTYRAG	3 cut(s)	520, 736, 801
SmoI	CTYRAG	3 cut(s)	520, 736, 801
SpeI	ACTAGT	1 cut(s)	830
Sse9I	AATT	6 cut(s)	438, 468, 499, 535, 841, 1090
SseBI	AGGCCT	1 cut(s)	172
SspMI	CTAG	8 cut(s)	174, 395, 444, 557, 656, 831, 1028, 1038
SstI	GAGCTC	2 cut(s)	521, 743
StuI	AGGCCT	1 cut(s)	172
StyD4I	CCNGG	7 cut(s)	34, 40, 298, 340, 508, 715, 1072
TaaI	ACNGT	5 cut(s)	85, 130, 368, 692, 1130
TaqI	TCGA	1 cut(s)	773
TasI	AATT	6 cut(s)	438, 468, 499, 535, 841, 1090
TatI	WGTACW	2 cut(s)	722, 1040
TfiI	GAWTC	3 cut(s)	712, 894, 998
Tru1I	TTAA	3 cut(s)	102, 363, 1177
Tru9I	TTAA	3 cut(s)	102, 363, 1177
TscAI	CASTG	6 cut(s)	139, 219, 573, 697, 910, 1135
TseFI	GTSAC	3 cut(s)	85, 130, 1132
TseI	GCWGC	1 cut(s)	728
Tsp45I	GTSAC	3 cut(s)	85, 130, 1132
TspDTI	ATGAA	4 cut(s)	258, 512, 725, 980
TspRI	CASTG	6 cut(s)	139, 219, 573, 697, 910, 1135
VneI	GTGCAC	1 cut(s)	21
VpaK11BI	GGWCC	2 cut(s)	38, 645
XagI	CCTNNNNNAGG	1 cut(s)	321
XapI	RAATTY	2 cut(s)	499, 535
XcmI	CCANNNNNNNNNTGG	1 cut(s)	248
XmiI	GTMKAC	1 cut(s)	1141
XspI	CTAG	8 cut(s)	174, 395, 444, 557, 656, 831, 1028, 1038
ZrmI	AGTACT	1 cut(s)	724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.