Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0008853

Physical Location & Seq

Genomic Coordinates Forward (+)

20176616 .. 20178107

Gene Structure 1492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g17830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGTATGATCACAACACTCAAAGGCCAAGAGGCTTTGGATTTATCACTTATGACTCGGAGGAGGCTGTTGACAGAGTTCTGCATAAAACATTTCATGAACTCAATGGTAAGATGGTTGAGGTCAAGAGGGCAGTCCCTAAGGAGCTATCCCCAGGACCCAGCAGGAGCCCTATGATAGGATACAACTATAGTCCGGGTAGGACCAATAGTTTGCTTAACAGCTATGCTCAGGGTTATAATACGAGCCCAATCGGAGGTTTTGGCATTAACATGGACACCAGGTTCAATCCAATCTCTAGTGGTCGTAGCGGGTTGTCTCCATTTGGCACTTCTGGATATGGAATAGGTGTGAATATGGATCCAGGGTTGAACCCAACCTATGGCGGAAATTCCAACTTTGGCAGTAGTCTAGGATATGCACGGATGTTGAGCCCCTTTTATAGTGGCAATTCAAACAGGTATAGTACCCCTATTGGATATAATGCCGGTAATGGAAGGAGCAGTCCTGTAGTCAACTCAACTACTCGGAGTGTCTGGCGAAATAGTGGCATCAACAATAACTCGAACCCTGCCAGTACCGGGGCCTACTTGAGCTCTGCAAATGGAGGTTTTGAAGTTATGATTGGAAACAATGGTTCAAATTGGGGTGCTAATTCATTTTCAACAGAAGGTAGAGGCAGTGATTCTGGCTATAATAGTGCCAATGGTTATGGAAGTGGAGGTAGCAGCTTTGGGTTGGGAGGAGGAGGATATGGAAGAAACGGTGGCACTGGTATAGCCCCAATGCCTTCATTTCCCGGATCAACTGTTGGTTATGAGGGCTTTTATGGGGACTTGTACCAGAACGGTTCAGTTTATGGCGACTCAACTTGGCGCTCTAGCAGTCCTGATCCAGATGGTTCTAGCACATTTGGTTATGGGCTGAGCGACTTACCTGCAGATGTCACAGCCAAAAGTTCTGGTGGATATATTGGAGGTTACAACGTTACCAGTACACAACCAAATAGAGGAGTTGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005844 GO:0008150 GO:0008187 GO:0008266 GO:0009987 GO:0030154 GO:0032502 GO:0032991 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048863 GO:0048864 GO:0048869 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

341

Amino Acids

35.36

Weight (kDa)

8.58

Isoelectric Point (pI)

39.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008853)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23960 FvH4_3g23960 FvH4_3g23960
malus_domestica	MD03G1189400.v1.1 MD11G1205500.v1.1
prunus_persica	Prupe.4G231900_v2.0.a1 Prupe.4G231900_v2.0.a1 Prupe.4G231900_v2.0.a1 Prupe.4G231900_v2.0.a1 Prupe.4G231900_v2.0.a1
pyrus_communis	pycom03g14230 pycom11g17830
rosa_chinensis	RchiOBHm_Chr5g0042461
rosa_laevigata	RLG00000034128
rosa_multiflora	Rmu_sc0002779.1_g000004
rosa_roxburghii	Rroxscaffold_1G00038230
rosa_rugosa	Rorug05G0200400 Rorug05G0200500
rosa_samantha	Rh5AG286600 Rh5BG291200 Rh5CG323300 Rh5DG300900
rosa_wichuraiana	Rw5G026620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	237
Acc36I	ACCTGC	1 cut(s)	943
AccB7I	CCANNNNNTGG	1 cut(s)	380
AciI	CCGC	2 cut(s)	309, 384
AclI	AACGTT	1 cut(s)	984
AclWI	GGATC	4 cut(s)	353, 366, 808, 884
AcsI	RAATTY	1 cut(s)	388
AfaI	GTAC	4 cut(s)	466, 577, 839, 994
AfiI	CCNNNNNNNGG	5 cut(s)	176, 254, 380, 579, 1007
AgsI	TTSAA	6 cut(s)	286, 370, 453, 614, 639, 663
AjnI	CCWGG	3 cut(s)	151, 278, 361
AjuI	GAANNNNNNNTTGG	2 cut(s)	606, 638
AloI	GAACNNNNNNTCC	2 cut(s)	266, 298
AluBI	AGCT	4 cut(s)	145, 222, 594, 729
AluI	AGCT	4 cut(s)	145, 222, 594, 729
Alw21I	GWGCWC	1 cut(s)	596
Alw26I	GTCTC	1 cut(s)	321
AlwI	GGATC	4 cut(s)	353, 366, 808, 884
AoxI	GGCC	2 cut(s)	23, 582
ApeKI	GCWGC	2 cut(s)	726, 1016
ApoI	RAATTY	1 cut(s)	388
ArsI	GACNNNNNNTTYG	2 cut(s)	193, 225
AspLEI	GCGC	1 cut(s)	876
AspS9I	GGNCC	3 cut(s)	155, 201, 582
AsuC2I	CCSGG	3 cut(s)	195, 580, 798
AvaII	GGWCC	2 cut(s)	155, 201
AxyI	CCTNAGG	1 cut(s)	138
BamHI	GGATCC	1 cut(s)	358
BanII	GRGCYC	4 cut(s)	170, 248, 434, 596
Bbv12I	GWGCWC	1 cut(s)	596
BbvI	GCAGC	2 cut(s)	738, 1003
BccI	CCATC	2 cut(s)	106, 890
BcgI	CGANNNNNNTGC	2 cut(s)	917, 951
BciT130I	CCWGG	3 cut(s)	153, 280, 363
BciVI	GTATCC	1 cut(s)	173
BclI	TGATCA	1 cut(s)	7
BcnI	CCSGG	3 cut(s)	195, 580, 798
BcoDI	GTCTC	1 cut(s)	321
BfaI	CTAG	4 cut(s)	297, 410, 879, 903
BfmI	CTRYAG	3 cut(s)	187, 507, 936
BfoI	RGCGCY	1 cut(s)	877
BfuAI	ACCTGC	1 cut(s)	943
BfuI	GTATCC	1 cut(s)	173
BisI	GCNGC	2 cut(s)	727, 1017
BlpI	GCTNAGC	1 cut(s)	923
BlsI	GCNGC	2 cut(s)	728, 1018
Bme1390I	CCNGG	6 cut(s)	153, 195, 280, 363, 580, 798
Bme18I	GGWCC	2 cut(s)	155, 201
BmgT120I	GGNCC	3 cut(s)	155, 201, 582
BmiI	GGNNCC	4 cut(s)	157, 167, 360, 583
BmrFI	CCNGG	6 cut(s)	153, 195, 280, 363, 580, 798
BmsI	GCATC	1 cut(s)	558
Bpu10I	CCTNAGC	1 cut(s)	228
Bpu1102I	GCTNAGC	1 cut(s)	923
BpuEI	CTTGAG	1 cut(s)	610
BpuMI	CCSGG	3 cut(s)	195, 580, 798
BsaJI	CCNNGG	3 cut(s)	151, 362, 579
Bsc4I	CCNNNNNNNGG	5 cut(s)	176, 254, 380, 579, 1007
Bse118I	RCCGGY	1 cut(s)	485
Bse1I	ACTGG	3 cut(s)	573, 775, 990
Bse21I	CCTNAGG	1 cut(s)	138
BseBI	CCWGG	3 cut(s)	153, 280, 363
BseDI	CCNNGG	3 cut(s)	151, 362, 579
BseGI	GGATG	1 cut(s)	429
BseLI	CCNNNNNNNGG	5 cut(s)	176, 254, 380, 579, 1007
BseMII	CTCAG	2 cut(s)	242, 914
BseNI	ACTGG	3 cut(s)	573, 775, 990
BseRI	GAGGAG	4 cut(s)	74, 756, 759, 1023
BseXI	GCAGC	2 cut(s)	738, 1003
BseYI	CCCAGC	1 cut(s)	158
BshFI	GGCC	2 cut(s)	25, 584
BsiHKAI	GWGCWC	1 cut(s)	596
BsiSI	CCGG	4 cut(s)	194, 486, 579, 798
BslFI	GGGAC	2 cut(s)	119, 845
BslI	CCNNNNNNNGG	5 cut(s)	176, 254, 380, 579, 1007
BsmAI	GTCTC	1 cut(s)	321
BsmFI	GGGAC	2 cut(s)	119, 845
BsnI	GGCC	2 cut(s)	25, 584
Bsp1286I	GDGCHC	4 cut(s)	170, 248, 434, 596
Bsp143I	GATC	4 cut(s)	7, 358, 800, 889
Bsp1720I	GCTNAGC	1 cut(s)	923
BspACI	CCGC	2 cut(s)	309, 384
BspANI	GGCC	2 cut(s)	25, 584
BspCNI	CTCAG	2 cut(s)	241, 915
BspHI	TCATGA	1 cut(s)	94
BspLI	GGNNCC	4 cut(s)	157, 167, 360, 583
BspMAI	CTGCAG	1 cut(s)	940
BspMI	ACCTGC	1 cut(s)	943
BspPI	GGATC	4 cut(s)	353, 366, 808, 884
BsrFI	RCCGGY	1 cut(s)	485
BsrI	ACTGG	3 cut(s)	573, 775, 990
BssAI	RCCGGY	1 cut(s)	485
BssECI	CCNNGG	3 cut(s)	151, 362, 579
BssMI	GATC	4 cut(s)	7, 358, 800, 889
Bst2UI	CCWGG	3 cut(s)	153, 280, 363
Bst4CI	ACNGT	3 cut(s)	764, 808, 848
BstDEI	CTNAG	4 cut(s)	138, 228, 923, 1020
BstENI	CCTNNNNNAGG	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	429
BstH2I	RGCGCY	1 cut(s)	877
BstHHI	GCGC	1 cut(s)	876
BstKTI	GATC	4 cut(s)	10, 361, 803, 892
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	4 cut(s)	7, 358, 800, 889
BstNI	CCWGG	3 cut(s)	153, 280, 363
BstSCI	CCNGG	6 cut(s)	151, 193, 278, 361, 578, 796
BstSFI	CTRYAG	3 cut(s)	187, 507, 936
BstV1I	GCAGC	2 cut(s)	738, 1003
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
Bsu36I	CCTNAGG	1 cut(s)	138
BsuI	GTATCC	1 cut(s)	173
BsuRI	GGCC	2 cut(s)	25, 584
BtsCI	GGATG	1 cut(s)	429
BtsI	GCAGTG	1 cut(s)	685
BtsIMutI	CAGTG	2 cut(s)	685, 768
BveI	ACCTGC	1 cut(s)	943
CciI	TCATGA	1 cut(s)	94
CfoI	GCGC	1 cut(s)	876
Cfr10I	RCCGGY	1 cut(s)	485
Cfr13I	GGNCC	3 cut(s)	155, 201, 582
CsiI	ACCWGGT	1 cut(s)	278
Csp6I	GTAC	4 cut(s)	465, 576, 838, 993
CviAII	CATG	2 cut(s)	95, 271
CviQI	GTAC	4 cut(s)	465, 576, 838, 993
DdeI	CTNAG	4 cut(s)	138, 228, 923, 1020
DpnI	GATC	4 cut(s)	9, 360, 802, 891
DpnII	GATC	4 cut(s)	7, 358, 800, 889
EciI	GGCGGA	1 cut(s)	399
Ecl136II	GAGCTC	1 cut(s)	594
Eco24I	GRGCYC	4 cut(s)	170, 248, 434, 596
Eco47I	GGWCC	2 cut(s)	155, 201
Eco53kI	GAGCTC	1 cut(s)	594
Eco81I	CCTNAGG	1 cut(s)	138
EcoICRI	GAGCTC	1 cut(s)	594
EcoNI	CCTNNNNNAGG	1 cut(s)	174
EcoO109I	RGGNCCY	2 cut(s)	155, 582
EcoRII	CCWGG	3 cut(s)	151, 278, 361
EcoT38I	GRGCYC	4 cut(s)	170, 248, 434, 596
FaeI	CATG	2 cut(s)	98, 274
FaqI	GGGAC	2 cut(s)	119, 845
FatI	CATG	2 cut(s)	94, 270
FauI	CCCGC	1 cut(s)	302
FbaI	TGATCA	1 cut(s)	7
Fnu4HI	GCNGC	2 cut(s)	727, 1017
FokI	GGATG	1 cut(s)	436
FriOI	GRGCYC	4 cut(s)	170, 248, 434, 596
Fsp4HI	GCNGC	2 cut(s)	727, 1017
FspBI	CTAG	4 cut(s)	297, 410, 879, 903
GlaI	GCGC	1 cut(s)	875
GluI	GCNGC	2 cut(s)	727, 1017
GsaI	CCCAGC	1 cut(s)	162
HaeII	RGCGCY	1 cut(s)	877
HaeIII	GGCC	2 cut(s)	25, 584
HapII	CCGG	4 cut(s)	194, 486, 579, 798
HhaI	GCGC	1 cut(s)	876
Hin1II	CATG	2 cut(s)	98, 274
Hin6I	GCGC	1 cut(s)	874
HinP1I	GCGC	1 cut(s)	874
HincII	GTYRAC	2 cut(s)	70, 514
HindII	GTYRAC	2 cut(s)	70, 514
HinfI	GANTC	3 cut(s)	53, 683, 863
HpaII	CCGG	4 cut(s)	194, 486, 579, 798
Hpy166II	GTNNAC	3 cut(s)	70, 514, 995
Hpy188I	TCNGA	3 cut(s)	58, 254, 528
Hpy188III	TCNNGA	5 cut(s)	95, 124, 333, 887, 893
Hpy8I	GTNNAC	3 cut(s)	70, 514, 995
HpyAV	CCTTC	3 cut(s)	489, 662, 798
HpyCH4III	ACNGT	3 cut(s)	764, 808, 848
HpyCH4IV	ACGT	1 cut(s)	984
HpyCH4V	TGCA	4 cut(s)	82, 419, 599, 938
HpyF3I	CTNAG	4 cut(s)	138, 228, 923, 1020
HpySE526I	ACGT	1 cut(s)	984
Hsp92II	CATG	2 cut(s)	98, 274
HspAI	GCGC	1 cut(s)	874
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	4 cut(s)	7, 358, 800, 889
LmnI	GCTCC	3 cut(s)	142, 165, 498
Lsp1109I	GCAGC	2 cut(s)	738, 1003
LweI	GCATC	1 cut(s)	558
MabI	ACCWGGT	1 cut(s)	278
MaeI	CTAG	4 cut(s)	297, 410, 879, 903
MaeII	ACGT	1 cut(s)	984
MaeIII	GTNAC	3 cut(s)	943, 977, 985
MalI	GATC	4 cut(s)	9, 360, 802, 891
MboI	GATC	4 cut(s)	7, 358, 800, 889
MboII	GAAGA	1 cut(s)	768
MflI	RGATCY	1 cut(s)	358
MhlI	GDGCHC	4 cut(s)	170, 248, 434, 596
MluCI	AATT	4 cut(s)	388, 448, 640, 652
MlyI	GAGTC	2 cut(s)	47, 857
MmeI	TCCRAC	1 cut(s)	417
MseI	TTAA	2 cut(s)	216, 267
MslI	CAYNNNNRTG	1 cut(s)	269
MspI	CCGG	4 cut(s)	194, 486, 579, 798
MspR9I	CCNGG	6 cut(s)	153, 195, 280, 363, 580, 798
MvaI	CCWGG	3 cut(s)	153, 280, 363
NciI	CCSGG	3 cut(s)	195, 580, 798
NdeII	GATC	4 cut(s)	7, 358, 800, 889
NlaIII	CATG	2 cut(s)	98, 274
NlaIV	GGNNCC	4 cut(s)	157, 167, 360, 583
NmuCI	GTSAC	1 cut(s)	943
PagI	TCATGA	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	683
PflMI	CCANNNNNTGG	1 cut(s)	380
PfoI	TCCNGGA	1 cut(s)	796
PkrI	GCNGC	2 cut(s)	728, 1018
PleI	GAGTC	2 cut(s)	47, 857
PpsI	GAGTC	2 cut(s)	47, 857
PpuMI	RGGWCCY	1 cut(s)	155
PsiI	TTATAA	1 cut(s)	237
Psp124BI	GAGCTC	1 cut(s)	596
Psp1406I	AACGTT	1 cut(s)	984
Psp5II	RGGWCCY	1 cut(s)	155
Psp6I	CCWGG	3 cut(s)	151, 278, 361
PspFI	CCCAGC	1 cut(s)	158
PspGI	CCWGG	3 cut(s)	151, 278, 361
PspN4I	GGNNCC	4 cut(s)	157, 167, 360, 583
PspPI	GGNCC	3 cut(s)	155, 201, 582
PspPPI	RGGWCCY	1 cut(s)	155
PstI	CTGCAG	1 cut(s)	940
PsuI	RGATCY	1 cut(s)	358
RsaI	GTAC	4 cut(s)	466, 577, 839, 994
RsaNI	GTAC	4 cut(s)	465, 576, 838, 993
RseI	CAYNNNNRTG	1 cut(s)	269
SacI	GAGCTC	1 cut(s)	596
SaqAI	TTAA	2 cut(s)	216, 267
SatI	GCNGC	2 cut(s)	727, 1017
Sau3AI	GATC	4 cut(s)	7, 358, 800, 889
Sau96I	GGNCC	3 cut(s)	155, 201, 582
SchI	GAGTC	2 cut(s)	47, 857
ScrFI	CCNGG	6 cut(s)	153, 195, 280, 363, 580, 798
SduI	GDGCHC	4 cut(s)	170, 248, 434, 596
SexAI	ACCWGGT	1 cut(s)	278
SfaNI	GCATC	1 cut(s)	558
SfcI	CTRYAG	3 cut(s)	187, 507, 936
SinI	GGWCC	2 cut(s)	155, 201
SmiMI	CAYNNNNRTG	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	589
SmoI	CTYRAG	1 cut(s)	589
Sse9I	AATT	4 cut(s)	388, 448, 640, 652
SsiI	CCGC	2 cut(s)	309, 384
SspMI	CTAG	4 cut(s)	297, 410, 879, 903
SstI	GAGCTC	1 cut(s)	596
StyD4I	CCNGG	6 cut(s)	151, 193, 278, 361, 578, 796
TaaI	ACNGT	3 cut(s)	764, 808, 848
TaiI	ACGT	1 cut(s)	987
TaqI	TCGA	1 cut(s)	563
TasI	AATT	4 cut(s)	388, 448, 640, 652
TatI	WGTACW	1 cut(s)	992
TfiI	GAWTC	1 cut(s)	683
Tru1I	TTAA	2 cut(s)	216, 267
Tru9I	TTAA	2 cut(s)	216, 267
TscAI	CASTG	2 cut(s)	685, 775
TseFI	GTSAC	1 cut(s)	943
TseI	GCWGC	2 cut(s)	726, 1016
Tsp45I	GTSAC	1 cut(s)	943
TspDTI	ATGAA	4 cut(s)	83, 111, 645, 780
TspGWI	ACGGA	1 cut(s)	436
TspRI	CASTG	2 cut(s)	685, 775
Van91I	CCANNNNNTGG	1 cut(s)	380
VpaK11BI	GGWCC	2 cut(s)	155, 201
XagI	CCTNNNNNAGG	1 cut(s)	174
XapI	RAATTY	1 cut(s)	388
XspI	CTAG	4 cut(s)	297, 410, 879, 903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.