Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0020342

Physical Location & Seq

Genomic Coordinates Forward (+)

15667443 .. 15667850

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g14340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCCCTTTCGTTGTCAAAAGATAGCTTTGAGTTGCTGTTGTACACGGTGTGGGGCATCTGGACTGACCGAAACTCTTTATTATGGTGGGGTGTAGTCTCGAGTCTTGGAGATATTCGTTTCAGAGTGCAGTCGTGGCAGACAGAATATAAAAAGTGGCATGGTAGTGAACTAGGCTACAAGATGAAAGAGCCTCAGAGGTGGTGTAAACCAGATCAAGCGTGGCTGAAAATTAATTTTGACGGGGCATGGGATGAGCATCGTCAAATGGGTGGCTGCGGAGTGGTGGTAAGGGACACAAGGGGGAAGTTTGCGGAGAAGCTTGGGGATGCCCAGCGGCAACTAGAAGGAGATGCCTTAATGGTGGTGGCAAGTATTCAAAAGGAGGCTAGCGCCAATTTCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

136

Amino Acids

15.6

Weight (kDa)

7.76

Isoelectric Point (pI)

24.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0020342)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47542
pyrus_communis	pycom03g14340
rosa_laevigata	RLG00000021637
rosa_roxburghii	Rroxscaffold_2G00084690
rosa_samantha	Rh2AG590700 Rh2DG613500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	279, 314, 337
AdeI	CACNNNGTG	1 cut(s)	51
AfaI	GTAC	1 cut(s)	44
AgsI	TTSAA	1 cut(s)	380
AluBI	AGCT	2 cut(s)	27, 322
AluI	AGCT	2 cut(s)	27, 322
Alw26I	GTCTC	1 cut(s)	103
Ama87I	CYCGRG	1 cut(s)	100
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	276
AseI	ATTAAT	1 cut(s)	234
AspLEI	GCGC	1 cut(s)	395
AspS9I	GGNCC	1 cut(s)	4
AsuNHI	GCTAGC	1 cut(s)	389
AvaI	CYCGRG	1 cut(s)	100
BbvI	GCAGC	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	103
BfaI	CTAG	3 cut(s)	173, 344, 390
BfoI	RGCGCY	1 cut(s)	396
BisI	GCNGC	2 cut(s)	277, 338
BlsI	GCNGC	2 cut(s)	278, 339
BmeT110I	CYCGRG	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	4
BmsI	GCATC	4 cut(s)	66, 268, 319, 343
BmtI	GCTAGC	1 cut(s)	393
BsaBI	GATNNNNATC	1 cut(s)	258
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bse8I	GATNNNNATC	1 cut(s)	258
BseGI	GGATG	2 cut(s)	259, 334
BseJI	GATNNNNATC	1 cut(s)	258
BseMII	CTCAG	1 cut(s)	209
BseXI	GCAGC	1 cut(s)	263
BseYI	CCCAGC	1 cut(s)	333
BsgI	GTGCAG	1 cut(s)	149
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	1 cut(s)	100
BslFI	GGGAC	1 cut(s)	308
BsmAI	GTCTC	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	100
Bsp1407I	TGTACA	1 cut(s)	42
Bsp143I	GATC	1 cut(s)	214
BspACI	CCGC	3 cut(s)	279, 314, 337
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	208
BspOI	GCTAGC	1 cut(s)	393
BsrGI	TGTACA	1 cut(s)	42
BssMI	GATC	1 cut(s)	214
Bst4CI	ACNGT	1 cut(s)	49
BstAUI	TGTACA	1 cut(s)	42
BstC8I	GCNNGC	1 cut(s)	391
BstDEI	CTNAG	1 cut(s)	195
BstF5I	GGATG	2 cut(s)	259, 334
BstH2I	RGCGCY	1 cut(s)	396
BstHHI	GCGC	1 cut(s)	395
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	263
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	259, 334
Cac8I	GCNNGC	1 cut(s)	391
CfoI	GCGC	1 cut(s)	395
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	43
CviAII	CATG	2 cut(s)	161, 249
CviJI	RGCY	8 cut(s)	5, 27, 177, 193, 226, 276, 322, 389
CviKI_1	RGCY	8 cut(s)	5, 27, 177, 193, 226, 276, 322, 389
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
DraIII	CACNNNGTG	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	100
FaeI	CATG	2 cut(s)	164, 252
FaiI	YATR	4 cut(s)	85, 150, 162, 250
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	2 cut(s)	160, 248
Fnu4HI	GCNGC	2 cut(s)	277, 338
FokI	GGATG	2 cut(s)	266, 341
Fsp4HI	GCNGC	2 cut(s)	277, 338
FspBI	CTAG	3 cut(s)	173, 344, 390
GlaI	GCGC	1 cut(s)	394
GluI	GCNGC	2 cut(s)	277, 338
GsaI	CCCAGC	1 cut(s)	337
HaeII	RGCGCY	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	395
Hin1II	CATG	2 cut(s)	164, 252
Hin6I	GCGC	1 cut(s)	393
HinP1I	GCGC	1 cut(s)	393
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	1 cut(s)	103
Hpy166II	GTNNAC	3 cut(s)	45, 170, 209
Hpy188I	TCNGA	2 cut(s)	125, 198
Hpy188III	TCNNGA	2 cut(s)	61, 100
Hpy8I	GTNNAC	3 cut(s)	45, 170, 209
HpyAV	CCTTC	1 cut(s)	341
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	1 cut(s)	130
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
HpyF3I	CTNAG	1 cut(s)	195
Hsp92II	CATG	2 cut(s)	164, 252
HspAI	GCGC	1 cut(s)	393
Kzo9I	GATC	1 cut(s)	214
LpnPI	CCDG	3 cut(s)	46, 225, 347
Lsp1109I	GCAGC	1 cut(s)	263
LweI	GCATC	4 cut(s)	66, 268, 319, 343
MaeI	CTAG	3 cut(s)	173, 344, 390
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MluCI	AATT	3 cut(s)	231, 235, 397
MlyI	GAGTC	1 cut(s)	112
MnlI	CCTC	3 cut(s)	192, 204, 379
MseI	TTAA	3 cut(s)	234, 359, 406
MslI	CAYNNNNRTG	1 cut(s)	165
MspA1I	CMGCKG	1 cut(s)	337
MwoI	GCNNNNNNNGC	1 cut(s)	136
NdeII	GATC	1 cut(s)	214
NheI	GCTAGC	1 cut(s)	389
NlaIII	CATG	2 cut(s)	164, 252
PaeR7I	CTCGAG	1 cut(s)	100
PkrI	GCNGC	2 cut(s)	278, 339
PleI	GAGTC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	111
PshBI	ATTAAT	1 cut(s)	234
PspFI	CCCAGC	1 cut(s)	333
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
RseI	CAYNNNNRTG	1 cut(s)	165
SaqAI	TTAA	3 cut(s)	234, 359, 406
SatI	GCNGC	2 cut(s)	277, 338
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	112
SetI	ASST	3 cut(s)	29, 203, 324
SfaNI	GCATC	4 cut(s)	66, 268, 319, 343
Sfr274I	CTCGAG	1 cut(s)	100
SlaI	CTCGAG	1 cut(s)	100
SmiMI	CAYNNNNRTG	1 cut(s)	165
SmlI	CTYRAG	1 cut(s)	100
SmoI	CTYRAG	1 cut(s)	100
Sse9I	AATT	3 cut(s)	231, 235, 397
SsiI	CCGC	3 cut(s)	279, 314, 337
SspMI	CTAG	3 cut(s)	173, 344, 390
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	1 cut(s)	101
TaqII	GACCGA	1 cut(s)	84
TasI	AATT	3 cut(s)	231, 235, 397
TatI	WGTACW	1 cut(s)	42
TauI	GCSGC	1 cut(s)	340
Tru1I	TTAA	3 cut(s)	234, 359, 406
Tru9I	TTAA	3 cut(s)	234, 359, 406
TseI	GCWGC	1 cut(s)	276
TspDTI	ATGAA	1 cut(s)	200
VspI	ATTAAT	1 cut(s)	234
XcmI	CCANNNNNNNNNTGG	1 cut(s)	219
XhoI	CTCGAG	1 cut(s)	100
XspI	CTAG	3 cut(s)	173, 344, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.