RLG00000021637

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0020342
Physical Location & Seq
Forward (+)
76920175 .. 76921170
996 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021637

Sequence Viewer

Length: 810 bp
ATGCCTTCAAACTGTCTGGCTTTGCATAATTTTTCCCATAAAGAGAAGGGAAGGTTCGCAGTAAAGCGTGATTTTTCCCCCAACAAAGATAAGGGAAAATTCCCAGTGAAGCATGTGTTAGAAGAAGTGGCAAGGGCTATGAGTGAAGATGTGTCAAATACGCCGTATGGTAATGTCTATAAACCTCTGTGGGATTCCTTGTGGAATGCACGCGTCCCTGGTACTCCGGTAGGGTTGAGATGTGTGCTTGGAAGGCTTGCATGGACATTCTCCGTGCTCGAGTGTATCTCCGGCGCAAGGCTTCACAGTTTGCAATGCTCGATCATGATGATTCTTTGGTCAATCTGGAAAGAGCGACATTCTCTTCTGTTGGGGAAAGGTGTTGAGTCATCACCCCCTGATGTTGTTGCTGGTCGTGCTAGAAAATGGTTAGAAGAATATTTAAGGCTTCCCCAAAACCTAAGCCTTAAACCGCAACACCCTGATCAGAAGTGGTGGAGGCCAATGAAGGGTTGGGTAAAGGTCAATGTGGATGGGGCTTTCGATGTTGCTTGTGCTAGTGGCGGGATCGGAGTGATTCTTCGTGACTGGAATGGCAATTTCCATGGCGCATTCTCTAAGAAAATAGGTGGTGTGTTTTATACCGTAGGTGCTGAGGCGGTGGCATTGCTTGAAGGTGTTCGCTTGGCCCTCGACCGTGGCTACCACAAGGTATGGTTCGAAAGTGACGCATTGAACACTATTGTTGCTCGCTACAATATAGAACTTCAGAATGACGATGACAATAGAGATCGATATTTATATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3

Protein Analysis

270

Amino Acids

30.51

Weight (kDa)

9.24

Isoelectric Point (pI)

40.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 176 - 245 1.2e-15 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020342)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g47542
pyrus_communis pycom03g14340
rosa_laevigata RLG00000021637
rosa_roxburghii Rroxscaffold_2G00084690
rosa_samantha Rh2AG590700 Rh2DG613500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 213
AciI CCGC 3 cut(s) 473, 564, 659
AclWI GGATC 1 cut(s) 575
AcsI RAATTY 1 cut(s) 98
AcuI CTGAAG 1 cut(s) 752
AfaI GTAC 1 cut(s) 223
AfiI CCNNNNNNNGG 2 cut(s) 297, 509
AflIII ACRYGT 1 cut(s) 211
AgsI TTSAA 3 cut(s) 9, 674, 736
AjnI CCWGG 1 cut(s) 217
Alw21I GWGCWC 1 cut(s) 279
AlwI GGATC 1 cut(s) 575
Ama87I CYCGRG 1 cut(s) 278
AoxI GGCC 2 cut(s) 500, 687
ApoI RAATTY 1 cut(s) 98
Asp700I GAANNNNTTC 1 cut(s) 678
AspLEI GCGC 2 cut(s) 296, 611
AspS9I GGNCC 1 cut(s) 688
AsuHPI GGTGA 1 cut(s) 384
AsuII TTCGAA 1 cut(s) 720
AvaI CYCGRG 1 cut(s) 278
BaeI ACNNNNGTAYC 2 cut(s) 213, 246
Bbv12I GWGCWC 1 cut(s) 279
BbvCI CCTCAGC 1 cut(s) 654
BccI CCATC 1 cut(s) 527
BceAI ACGGC 1 cut(s) 148
BciT130I CCWGG 1 cut(s) 219
BclI TGATCA 1 cut(s) 484
BfaI CTAG 2 cut(s) 420, 558
Bme1390I CCNGG 1 cut(s) 219
BmeT110I CYCGRG 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 688
BmrFI CCNGG 1 cut(s) 219
BmrI ACTGGG 1 cut(s) 98
BmuI ACTGGG 1 cut(s) 98
BplI GAGNNNNNCTC 2 cut(s) 272, 304
Bpu10I CCTNAGC 2 cut(s) 461, 654
Bpu14I TTCGAA 1 cut(s) 720
Bsa29I ATCGAT 1 cut(s) 793
BsaJI CCNNGG 3 cut(s) 217, 604, 697
BsaWI WCCGGW 1 cut(s) 226
Bsc4I CCNNNNNNNGG 2 cut(s) 297, 509
Bse1I ACTGG 2 cut(s) 104, 593
Bse3DI GCAATG 2 cut(s) 320, 665
BseBI CCWGG 1 cut(s) 219
BseCI ATCGAT 1 cut(s) 793
BseDI CCNNGG 3 cut(s) 217, 604, 697
BseGI GGATG 1 cut(s) 538
BseLI CCNNNNNNNGG 2 cut(s) 297, 509
BseMI GCAATG 2 cut(s) 320, 665
BseMII CTCAG 1 cut(s) 645
BseNI ACTGG 2 cut(s) 104, 593
Bsh1236I CGCG 1 cut(s) 213
Bsh1285I CGRYCG 1 cut(s) 697
BshFI GGCC 2 cut(s) 502, 689
BshVI ATCGAT 1 cut(s) 793
BsiEI CGRYCG 1 cut(s) 697
BsiHKAI GWGCWC 1 cut(s) 279
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 2 cut(s) 227, 291
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 2 cut(s) 297, 509
BsmFI GGGAC 1 cut(s) 200
BsmI GAATGC 2 cut(s) 211, 611
BsnI GGCC 2 cut(s) 502, 689
BsoBI CYCGRG 1 cut(s) 278
Bsp119I TTCGAA 1 cut(s) 720
Bsp1286I GDGCHC 1 cut(s) 279
Bsp143I GATC 4 cut(s) 321, 484, 567, 790
Bsp19I CCATGG 1 cut(s) 604
BspACI CCGC 3 cut(s) 473, 564, 659
BspANI GGCC 2 cut(s) 502, 689
BspCNI CTCAG 1 cut(s) 646
BspDI ATCGAT 1 cut(s) 793
BspFNI CGCG 1 cut(s) 213
BspHI TCATGA 1 cut(s) 324
BspPI GGATC 1 cut(s) 575
BspT104I TTCGAA 1 cut(s) 720
BsrDI GCAATG 2 cut(s) 320, 665
BsrI ACTGG 2 cut(s) 104, 593
BssECI CCNNGG 3 cut(s) 217, 604, 697
BssMI GATC 4 cut(s) 321, 484, 567, 790
BssT1I CCWWGG 1 cut(s) 604
Bst2UI CCWGG 1 cut(s) 219
Bst4CI ACNGT 4 cut(s) 14, 308, 646, 698
Bst6I CTCTTC 1 cut(s) 369
BstBI TTCGAA 1 cut(s) 720
BstC8I GCNNGC 3 cut(s) 211, 258, 751
BstDEI CTNAG 3 cut(s) 461, 618, 654
BstDSI CCRYGG 2 cut(s) 604, 697
BstF5I GGATG 1 cut(s) 538
BstFNI CGCG 1 cut(s) 213
BstHHI GCGC 2 cut(s) 296, 611
BstKTI GATC 4 cut(s) 324, 487, 570, 793
BstMBI GATC 4 cut(s) 321, 484, 567, 790
BstMCI CGRYCG 1 cut(s) 697
BstMWI GCNNNNNNNGC 2 cut(s) 253, 416
BstNI CCWGG 1 cut(s) 219
BstNSI RCATGY 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 217
BstUI CGCG 1 cut(s) 213
Bsu15I ATCGAT 1 cut(s) 793
BsuRI GGCC 2 cut(s) 502, 689
BsuTUI ATCGAT 1 cut(s) 793
BtgI CCRYGG 2 cut(s) 604, 697
BtsCI GGATG 1 cut(s) 538
BtsIMutI CAGTG 1 cut(s) 111
Cac8I GCNNGC 3 cut(s) 211, 258, 751
CciI TCATGA 1 cut(s) 324
CfoI GCGC 2 cut(s) 296, 611
Cfr13I GGNCC 1 cut(s) 688
ClaI ATCGAT 1 cut(s) 793
CseI GACGC 2 cut(s) 202, 737
Csp6I GTAC 1 cut(s) 222
CviAII CATG 4 cut(s) 113, 261, 325, 605
CviQI GTAC 1 cut(s) 222
DdeI CTNAG 3 cut(s) 461, 618, 654
DpnI GATC 4 cut(s) 323, 486, 569, 792
DpnII GATC 4 cut(s) 321, 484, 567, 790
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
Eco130I CCWWGG 1 cut(s) 604
Eco57I CTGAAG 1 cut(s) 752
Eco88I CYCGRG 1 cut(s) 278
EcoRII CCWGG 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 604
ErhI CCWWGG 1 cut(s) 604
FaeI CATG 4 cut(s) 116, 264, 328, 608
FaqI GGGAC 1 cut(s) 200
FatI CATG 4 cut(s) 112, 260, 324, 604
FauI CCCGC 1 cut(s) 557
FbaI TGATCA 1 cut(s) 484
FokI GGATG 1 cut(s) 545
FspBI CTAG 2 cut(s) 420, 558
GlaI GCGC 2 cut(s) 295, 610
HaeIII GGCC 2 cut(s) 502, 689
HapII CCGG 2 cut(s) 227, 291
HgaI GACGC 2 cut(s) 202, 737
HhaI GCGC 2 cut(s) 296, 611
Hin1II CATG 4 cut(s) 116, 264, 328, 608
Hin6I GCGC 2 cut(s) 294, 609
HinP1I GCGC 2 cut(s) 294, 609
HinfI GANTC 4 cut(s) 194, 331, 386, 577
HpaII CCGG 2 cut(s) 227, 291
HphI GGTGA 1 cut(s) 384
Hpy188I TCNGA 3 cut(s) 489, 572, 771
Hpy188III TCNNGA 3 cut(s) 325, 346, 584
HpyAV CCTTC 6 cut(s) 15, 40, 45, 246, 502, 668
HpyCH4III ACNGT 4 cut(s) 14, 308, 646, 698
HpyCH4V TGCA 4 cut(s) 25, 209, 260, 313
HpyF10VI GCNNNNNNNGC 2 cut(s) 253, 416
HpyF3I CTNAG 3 cut(s) 461, 618, 654
Hsp92II CATG 4 cut(s) 116, 264, 328, 608
HspAI GCGC 2 cut(s) 294, 609
Ksp22I TGATCA 1 cut(s) 484
Kzo9I GATC 4 cut(s) 321, 484, 567, 790
MaeI CTAG 2 cut(s) 420, 558
MaeIII GTNAC 2 cut(s) 584, 725
MalI GATC 4 cut(s) 323, 486, 569, 792
MboI GATC 4 cut(s) 321, 484, 567, 790
MboII GAAGA 5 cut(s) 134, 158, 356, 446, 572
MhlI GDGCHC 1 cut(s) 279
MluCI AATT 3 cut(s) 28, 98, 598
MluI ACGCGT 1 cut(s) 211
MlyI GAGTC 1 cut(s) 395
MnlI CCTC 4 cut(s) 195, 492, 649, 701
MroXI GAANNNNTTC 1 cut(s) 678
MseI TTAA 2 cut(s) 443, 468
MspI CCGG 2 cut(s) 227, 291
MspR9I CCNGG 1 cut(s) 219
Mva1269I GAATGC 2 cut(s) 211, 611
MvaI CCWGG 1 cut(s) 219
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 253, 416
NcoI CCATGG 1 cut(s) 604
NdeII GATC 4 cut(s) 321, 484, 567, 790
NlaIII CATG 4 cut(s) 116, 264, 328, 608
NmuCI GTSAC 2 cut(s) 584, 725
NspI RCATGY 1 cut(s) 116
NspV TTCGAA 1 cut(s) 720
PaeR7I CTCGAG 1 cut(s) 278
PagI TCATGA 1 cut(s) 324
PctI GAATGC 2 cut(s) 211, 611
PdmI GAANNNNTTC 1 cut(s) 678
PfeI GAWTC 3 cut(s) 194, 331, 577
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
Psp6I CCWGG 1 cut(s) 217
PspGI CCWGG 1 cut(s) 217
PspPI GGNCC 1 cut(s) 688
PspXI VCTCGAGB 1 cut(s) 278
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
SaqAI TTAA 2 cut(s) 443, 468
Sau3AI GATC 4 cut(s) 321, 484, 567, 790
Sau96I GGNCC 1 cut(s) 688
SchI GAGTC 1 cut(s) 395
ScrFI CCNGG 1 cut(s) 219
SduI GDGCHC 1 cut(s) 279
SetI ASST 9 cut(s) 56, 187, 382, 462, 525, 631, 652, 679, 714
Sfr274I CTCGAG 1 cut(s) 278
SfuI TTCGAA 1 cut(s) 720
SlaI CTCGAG 1 cut(s) 278
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 3 cut(s) 28, 98, 598
SsiI CCGC 3 cut(s) 473, 564, 659
SspI AATATT 1 cut(s) 440
SspMI CTAG 2 cut(s) 420, 558
StyD4I CCNGG 1 cut(s) 217
StyI CCWWGG 1 cut(s) 604
TaaI ACNGT 4 cut(s) 14, 308, 646, 698
TaqI TCGA 6 cut(s) 279, 320, 543, 693, 720, 793
TasI AATT 3 cut(s) 28, 98, 598
TfiI GAWTC 3 cut(s) 194, 331, 577
Tru1I TTAA 2 cut(s) 443, 468
Tru9I TTAA 2 cut(s) 443, 468
TscAI CASTG 1 cut(s) 111
TseFI GTSAC 2 cut(s) 584, 725
Tsp45I GTSAC 2 cut(s) 584, 725
TspDTI ATGAA 1 cut(s) 521
TspGWI ACGGA 1 cut(s) 262
TspRI CASTG 1 cut(s) 111
XapI RAATTY 1 cut(s) 98
XceI RCATGY 1 cut(s) 116
XcmI CCANNNNNNNNNTGG 1 cut(s) 510
XhoI CTCGAG 1 cut(s) 278
XmnI GAANNNNTTC 1 cut(s) 678
XspI CTAG 2 cut(s) 420, 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.