Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0016214

Physical Location & Seq

Genomic Coordinates Forward (+)

16370490 .. 16371148

Gene Structure 659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGATAACAATCAATTCAATTCCCTTTTATTTTTCCCAGCCAATAAACATTATCCAAAACAAAATCTCCCCAATTGGCCTGCTGAAGTATGACAAAGTTGCAAAGATAATAAAACCACCTTTTCTGCTAGGCAGTTGGGATTTCACGATGAGGTGCATCCTGTTTCACCCAGCACTGCTTCCTCTGCACACCCAGCTAAACCAAAGACAGCAGCTGCTGGGTACGCATTCCACTAAACTTGCTGCTGCACCTGCACCTGCACCGCATAGGCAGCGGCACTTGCTCTCGTTAAGAACCAAGGCCATCCAAAACGCTGTTACTTTTCTTGGTGTCGATCCCTCTGCCAAATCCGGTGGAGACATTTCTGTCCTCCTTCAAACTGGCGGGGTGCTTCTTTTGGTTTACTTGTTTTCCAACTTCGTTGTGCCGGTTCTCGTCTCGAAATTTTTCGGGTTCGATAAGGTGGGCGAAGAAGTTGAGGACGATGGCGACCTATTTAACAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

18.64

Weight (kDa)

9.52

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50732
fragaria_vesca	FvH4_3g23030
malus_domestica	MD03G1198300.v1.1
prunus_persica	Prupe.4G216700_v2.0.a1
pyrus_communis	pycom03g14990
rosa_laevigata	RLG00000033985
rosa_roxburghii	Rroxscaffold_1G00040140 Rroxscaffold_1G00040870
rosa_rugosa	Rorug05G0185400 Rorug05G0185500
rosa_samantha	Rh5AG272300 Rh5BG276300 Rh5CG309000 Rh5DG284800
rosa_wichuraiana	Rw5G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	259, 265
AasI	GACNNNNNNGTC	1 cut(s)	365
Acc36I	ACCTGC	2 cut(s)	259, 265
AciI	CCGC	3 cut(s)	263, 274, 384
AclWI	GGATC	1 cut(s)	329
AcsI	RAATTY	1 cut(s)	443
AcuI	CTGAAG	1 cut(s)	104
AfaI	GTAC	1 cut(s)	223
AgsI	TTSAA	2 cut(s)	18, 377
AluBI	AGCT	2 cut(s)	196, 214
AluI	AGCT	2 cut(s)	196, 214
Alw26I	GTCTC	2 cut(s)	351, 442
AlwI	GGATC	1 cut(s)	329
AlwNI	CAGNNNCTG	2 cut(s)	214, 217
AoxI	GGCC	2 cut(s)	76, 300
ApeKI	GCWGC	5 cut(s)	211, 214, 242, 245, 271
ApoI	RAATTY	1 cut(s)	443
Asp700I	GAANNNNTTC	1 cut(s)	446
AsuHPI	GGTGA	1 cut(s)	158
BbvI	GCAGC	5 cut(s)	201, 223, 229, 232, 283
BccI	CCATC	2 cut(s)	311, 479
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BcoDI	GTCTC	2 cut(s)	351, 442
BfaI	CTAG	1 cut(s)	128
BfuAI	ACCTGC	2 cut(s)	259, 265
BisI	GCNGC	6 cut(s)	212, 215, 243, 246, 272, 275
BlsI	GCNGC	6 cut(s)	213, 216, 244, 247, 273, 276
BmsI	GCATC	1 cut(s)	165
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	297
BsaWI	WCCGGW	1 cut(s)	350
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
Bse118I	RCCGGY	1 cut(s)	427
Bse1I	ACTGG	1 cut(s)	385
Bse8I	GATNNNNATC	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	2 cut(s)	156, 303
BseJI	GATNNNNATC	1 cut(s)	8
BseNI	ACTGG	1 cut(s)	385
BseXI	GCAGC	5 cut(s)	201, 223, 229, 232, 283
BseYI	CCCAGC	4 cut(s)	36, 169, 192, 217
BsgI	GTGCAG	4 cut(s)	170, 231, 237, 243
BshFI	GGCC	2 cut(s)	78, 302
BsiSI	CCGG	2 cut(s)	351, 428
BsmAI	GTCTC	2 cut(s)	351, 442
BsmBI	CGTCTC	1 cut(s)	442
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	2 cut(s)	78, 302
Bsp143I	GATC	1 cut(s)	334
BspACI	CCGC	3 cut(s)	263, 274, 384
BspANI	GGCC	2 cut(s)	78, 302
BspMI	ACCTGC	2 cut(s)	259, 265
BspPI	GGATC	1 cut(s)	329
BsrFI	RCCGGY	1 cut(s)	427
BsrI	ACTGG	1 cut(s)	385
BssAI	RCCGGY	1 cut(s)	427
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	1 cut(s)	334
BssT1I	CCWWGG	1 cut(s)	297
BstC8I	GCNNGC	1 cut(s)	80
BstF5I	GGATG	2 cut(s)	156, 303
BstKTI	GATC	1 cut(s)	337
BstMAI	GTCTC	2 cut(s)	351, 442
BstMBI	GATC	1 cut(s)	334
BstMWI	GCNNNNNNNGC	6 cut(s)	184, 193, 223, 251, 271, 280
BstV1I	GCAGC	5 cut(s)	201, 223, 229, 232, 283
BsuRI	GGCC	2 cut(s)	78, 302
BtsCI	GGATG	2 cut(s)	156, 303
BtsI	GCAGTG	1 cut(s)	173
BtsIMutI	CAGTG	1 cut(s)	173
BveI	ACCTGC	2 cut(s)	259, 265
Cac8I	GCNNGC	1 cut(s)	80
CaiI	CAGNNNCTG	2 cut(s)	214, 217
Cfr10I	RCCGGY	1 cut(s)	427
Csp6I	GTAC	1 cut(s)	222
CspCI	CAANNNNNGTGG	4 cut(s)	220, 255, 334, 369
CviJI	RGCY	5 cut(s)	40, 78, 196, 214, 302
CviKI_1	RGCY	5 cut(s)	40, 78, 196, 214, 302
CviQI	GTAC	1 cut(s)	222
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
DrdI	GACNNNNNNGTC	1 cut(s)	365
DseDI	GACNNNNNNGTC	1 cut(s)	365
Eco130I	CCWWGG	1 cut(s)	297
Eco57I	CTGAAG	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
Esp3I	CGTCTC	1 cut(s)	442
FaiI	YATR	2 cut(s)	90, 267
FauI	CCCGC	1 cut(s)	377
Fnu4HI	GCNGC	6 cut(s)	212, 215, 243, 246, 272, 275
FokI	GGATG	2 cut(s)	143, 290
Fsp4HI	GCNGC	6 cut(s)	212, 215, 243, 246, 272, 275
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	6 cut(s)	212, 215, 243, 246, 272, 275
GsaI	CCCAGC	4 cut(s)	40, 173, 196, 221
HaeIII	GGCC	2 cut(s)	78, 302
HapII	CCGG	2 cut(s)	351, 428
HpaII	CCGG	2 cut(s)	351, 428
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188III	TCNNGA	2 cut(s)	145, 439
Hpy8I	GTNNAC	1 cut(s)	403
HpyAV	CCTTC	1 cut(s)	383
HpyCH4V	TGCA	6 cut(s)	101, 156, 187, 248, 254, 260
HpyF10VI	GCNNNNNNNGC	6 cut(s)	184, 193, 223, 251, 271, 280
Kzo9I	GATC	1 cut(s)	334
Lsp1109I	GCAGC	5 cut(s)	201, 223, 229, 232, 283
LweI	GCATC	1 cut(s)	165
MaeI	CTAG	1 cut(s)	128
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	1 cut(s)	336
MboI	GATC	1 cut(s)	334
MboII	GAAGA	1 cut(s)	482
MfeI	CAATTG	1 cut(s)	72
MluCI	AATT	4 cut(s)	13, 18, 72, 443
MmeI	TCCRAC	1 cut(s)	438
MnlI	CCTC	5 cut(s)	144, 192, 349, 380, 472
MroXI	GAANNNNTTC	1 cut(s)	446
MseI	TTAA	2 cut(s)	290, 498
MspA1I	CMGCKG	2 cut(s)	214, 274
MspI	CCGG	2 cut(s)	351, 428
MunI	CAATTG	1 cut(s)	72
Mva1269I	GAATGC	1 cut(s)	226
MwoI	GCNNNNNNNGC	6 cut(s)	184, 193, 223, 251, 271, 280
NdeII	GATC	1 cut(s)	334
PaqCI	CACCTGC	2 cut(s)	259, 265
PctI	GAATGC	1 cut(s)	226
PdmI	GAANNNNTTC	1 cut(s)	446
PkrI	GCNGC	6 cut(s)	213, 216, 244, 247, 273, 276
PspFI	CCCAGC	4 cut(s)	36, 169, 192, 217
PstNI	CAGNNNCTG	2 cut(s)	214, 217
PvuII	CAGCTG	1 cut(s)	214
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
SaqAI	TTAA	2 cut(s)	290, 498
SatI	GCNGC	6 cut(s)	212, 215, 243, 246, 272, 275
Sau3AI	GATC	1 cut(s)	334
SetI	ASST	9 cut(s)	121, 155, 198, 216, 253, 259, 465, 495, 506
SfaNI	GCATC	1 cut(s)	165
Sse9I	AATT	4 cut(s)	13, 18, 72, 443
SsiI	CCGC	3 cut(s)	263, 274, 384
SspMI	CTAG	1 cut(s)	128
StyI	CCWWGG	1 cut(s)	297
TaqI	TCGA	3 cut(s)	333, 440, 456
TasI	AATT	4 cut(s)	13, 18, 72, 443
TauI	GCSGC	1 cut(s)	277
Tru1I	TTAA	2 cut(s)	290, 498
Tru9I	TTAA	2 cut(s)	290, 498
TscAI	CASTG	1 cut(s)	180
TseI	GCWGC	5 cut(s)	211, 214, 242, 245, 271
TspRI	CASTG	1 cut(s)	180
XapI	RAATTY	1 cut(s)	443
XmnI	GAANNNNTTC	1 cut(s)	446
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.