Rh5CG309000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0016214
Physical Location & Seq
Forward (+)
34113546 .. 34114025
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG309000.1

Sequence Viewer

Length: 363 bp
ATGAGGTCTATTCAGTCTCGCTCTGCATTGCTTCCCATGCATACTAGGCTAAAACACAAATACCTTCTGGGAAGTACTAAGCTGCTTTGGCTTTCCACCGATGAACCTATCAAGCTTGCTACACAGAGCCAACAACTCCATCTCTCACTAGGAACCAGTTGCAGGGCCATGCACAATTACAATGCCATTGTTCTTGGTGTCACTCCCCCTGCCAAGTCCGGCGACATCTCGGTCCTCCTTCAAGTTGGTGGGATTCTTCTTTTCGCCTACGTGTTTTCGAATTTCATTGTGCCGAATCTCATTTCTGAATATTTTGGGTTCAATAAGTCGAGTGAGGATGAGGAAGATGATGATCTTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.37

Weight (kDa)

6.39

Isoelectric Point (pI)

63.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016214)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G50732
fragaria_vesca FvH4_3g23030
malus_domestica MD03G1198300.v1.1
prunus_persica Prupe.4G216700_v2.0.a1
pyrus_communis pycom03g14990
rosa_laevigata RLG00000033985
rosa_roxburghii Rroxscaffold_1G00040140 Rroxscaffold_1G00040870
rosa_rugosa Rorug05G0185400 Rorug05G0185500
rosa_samantha Rh5AG272300 Rh5BG276300 Rh5CG309000 Rh5DG284800
rosa_wichuraiana Rw5G025500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 230
AcsI RAATTY 1 cut(s) 280
AfaI GTAC 1 cut(s) 76
AfiI CCNNNNNNNGG 1 cut(s) 162
AflIII ACRYGT 1 cut(s) 270
AgsI TTSAA 2 cut(s) 242, 322
AluBI AGCT 2 cut(s) 82, 115
AluI AGCT 2 cut(s) 82, 115
Alw26I GTCTC 1 cut(s) 21
AoxI GGCC 1 cut(s) 165
ApeKI GCWGC 1 cut(s) 82
ApoI RAATTY 1 cut(s) 280
AspS9I GGNCC 2 cut(s) 165, 232
AsuII TTCGAA 1 cut(s) 278
AvaII GGWCC 1 cut(s) 232
BbvI GCAGC 1 cut(s) 69
BccI CCATC 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 21
BfaI CTAG 2 cut(s) 45, 149
BisI GCNGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 84
BmcAI AGTACT 1 cut(s) 76
Bme18I GGWCC 1 cut(s) 232
BmgT120I GGNCC 2 cut(s) 165, 232
BmiI GGNNCC 1 cut(s) 154
Bpu14I TTCGAA 1 cut(s) 278
BsaAI YACGTR 1 cut(s) 271
BsaBI GATNNNNATC 1 cut(s) 351
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse1I ACTGG 1 cut(s) 156
Bse3DI GCAATG 1 cut(s) 26
Bse8I GATNNNNATC 1 cut(s) 351
BseGI GGATG 1 cut(s) 343
BseJI GATNNNNATC 1 cut(s) 351
BseLI CCNNNNNNNGG 1 cut(s) 162
BseMI GCAATG 1 cut(s) 26
BseNI ACTGG 1 cut(s) 156
BseXI GCAGC 1 cut(s) 69
BshFI GGCC 1 cut(s) 167
BsiSI CCGG 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 162
BsmAI GTCTC 1 cut(s) 21
BsnI GGCC 1 cut(s) 167
Bsp119I TTCGAA 1 cut(s) 278
Bsp143I GATC 1 cut(s) 352
BspANI GGCC 1 cut(s) 167
BspLI GGNNCC 1 cut(s) 154
BspT104I TTCGAA 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 26
BsrI ACTGG 1 cut(s) 156
BssMI GATC 1 cut(s) 352
BstBAI YACGTR 1 cut(s) 271
BstBI TTCGAA 1 cut(s) 278
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 78
BstF5I GGATG 1 cut(s) 343
BstKTI GATC 1 cut(s) 355
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 1 cut(s) 352
BstMWI GCNNNNNNNGC 3 cut(s) 37, 46, 88
BstV1I GCAGC 1 cut(s) 69
BsuRI GGCC 1 cut(s) 167
BtsCI GGATG 1 cut(s) 343
Cac8I GCNNGC 1 cut(s) 117
Cfr13I GGNCC 2 cut(s) 165, 232
Csp6I GTAC 1 cut(s) 75
CviAII CATG 2 cut(s) 37, 169
CviJI RGCY 6 cut(s) 49, 82, 91, 115, 129, 167
CviKI_1 RGCY 6 cut(s) 49, 82, 91, 115, 129, 167
CviQI GTAC 1 cut(s) 75
DdeI CTNAG 1 cut(s) 78
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
DrdI GACNNNNNNGTC 1 cut(s) 230
DseDI GACNNNNNNGTC 1 cut(s) 230
Eco47I GGWCC 1 cut(s) 232
EcoT22I ATGCAT 1 cut(s) 42
FaeI CATG 2 cut(s) 40, 172
FaiI YATR 5 cut(s) 38, 42, 170, 359, 361
FatI CATG 2 cut(s) 36, 168
Fnu4HI GCNGC 1 cut(s) 83
FokI GGATG 1 cut(s) 350
Fsp4HI GCNGC 1 cut(s) 83
FspBI CTAG 2 cut(s) 45, 149
GluI GCNGC 1 cut(s) 83
HaeIII GGCC 1 cut(s) 167
HapII CCGG 1 cut(s) 219
Hin1II CATG 2 cut(s) 40, 172
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 2 cut(s) 253, 295
HpaII CCGG 1 cut(s) 219
Hpy188I TCNGA 1 cut(s) 307
HpyAV CCTTC 2 cut(s) 74, 248
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 4 cut(s) 26, 40, 162, 172
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 46, 88
HpyF3I CTNAG 1 cut(s) 78
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 2 cut(s) 40, 172
Kzo9I GATC 1 cut(s) 352
LpnPI CCDG 5 cut(s) 53, 148, 169, 222, 232
Lsp1109I GCAGC 1 cut(s) 69
MaeI CTAG 2 cut(s) 45, 149
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 1 cut(s) 199
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MboII GAAGA 2 cut(s) 248, 356
MluCI AATT 2 cut(s) 175, 280
MnlI CCTC 3 cut(s) 245, 328, 334
Mph1103I ATGCAT 1 cut(s) 42
MspI CCGG 1 cut(s) 219
MwoI GCNNNNNNNGC 3 cut(s) 37, 46, 88
NdeII GATC 1 cut(s) 352
NlaIII CATG 2 cut(s) 40, 172
NlaIV GGNNCC 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 199
NsiI ATGCAT 1 cut(s) 42
NspV TTCGAA 1 cut(s) 278
PfeI GAWTC 2 cut(s) 253, 295
PkrI GCNGC 1 cut(s) 84
Ppu21I YACGTR 1 cut(s) 271
PspN4I GGNNCC 1 cut(s) 154
PspPI GGNCC 2 cut(s) 165, 232
RsaI GTAC 1 cut(s) 76
RsaNI GTAC 1 cut(s) 75
SatI GCNGC 1 cut(s) 83
Sau3AI GATC 1 cut(s) 352
Sau96I GGNCC 2 cut(s) 165, 232
ScaI AGTACT 1 cut(s) 76
SetI ASST 6 cut(s) 8, 66, 84, 109, 117, 273
SfuI TTCGAA 1 cut(s) 278
SinI GGWCC 1 cut(s) 232
Sse9I AATT 2 cut(s) 175, 280
SspI AATATT 1 cut(s) 311
SspMI CTAG 2 cut(s) 45, 149
TaiI ACGT 1 cut(s) 273
TaqI TCGA 2 cut(s) 278, 329
TaqII GACCGA 1 cut(s) 220
TasI AATT 2 cut(s) 175, 280
TatI WGTACW 1 cut(s) 74
TfiI GAWTC 2 cut(s) 253, 295
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 2 cut(s) 117, 274
VpaK11BI GGWCC 1 cut(s) 232
XapI RAATTY 1 cut(s) 280
XspI CTAG 2 cut(s) 45, 149
ZrmI AGTACT 1 cut(s) 76
Zsp2I ATGCAT 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.