Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0016214

Physical Location & Seq

Genomic Coordinates Reverse (-)

35044565 .. 35045025

Gene Structure 461 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033985

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAGGTCCATTCAGTCTCGCTCTGCATTGCTTCCCATGCATACTGGGCTAAAACATAAACACCTTCTGGGAAGTACTAAGCTGCTTTGGCTTTCCACCAATGAACCTATCAAGCTTGCTTCACAGAGCCAACAACTCCCTCTCTCATTAGGAACCAGTTGCGGGGCCATGCACAATTACAATGCCATTGTTCTTGGTGTCACTCCCCCTGCCAAGTCCGGCGACATCTCGGTCCTCCTTCAAGTTGGTGGGATTCTTCTTTTCGCCTACGTGTTTTCTAATTTCATTGTGCCGAATCTCATTTCTGAATATTTTGGGTTCAATAAGTCGCGTGAGGATGAGGAAGATGAGGATCTTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

13.17

Weight (kDa)

6.39

Isoelectric Point (pI)

64.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50732
fragaria_vesca	FvH4_3g23030
malus_domestica	MD03G1198300.v1.1
prunus_persica	Prupe.4G216700_v2.0.a1
pyrus_communis	pycom03g14990
rosa_laevigata	RLG00000033985
rosa_roxburghii	Rroxscaffold_1G00040140 Rroxscaffold_1G00040870
rosa_rugosa	Rorug05G0185400 Rorug05G0185500
rosa_samantha	Rh5AG272300 Rh5BG276300 Rh5CG309000 Rh5DG284800
rosa_wichuraiana	Rw5G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	230
AccII	CGCG	1 cut(s)	331
AciI	CCGC	1 cut(s)	162
AclWI	GGATC	1 cut(s)	360
AfaI	GTAC	1 cut(s)	76
AfiI	CCNNNNNNNGG	1 cut(s)	162
AflIII	ACRYGT	1 cut(s)	270
AgsI	TTSAA	2 cut(s)	242, 322
AluBI	AGCT	2 cut(s)	82, 115
AluI	AGCT	2 cut(s)	82, 115
Alw26I	GTCTC	1 cut(s)	21
AlwI	GGATC	1 cut(s)	360
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	1 cut(s)	82
AspS9I	GGNCC	3 cut(s)	6, 165, 232
AvaII	GGWCC	2 cut(s)	6, 232
BbvI	GCAGC	1 cut(s)	69
BcoDI	GTCTC	1 cut(s)	21
BisI	GCNGC	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	84
BmcAI	AGTACT	1 cut(s)	76
Bme18I	GGWCC	2 cut(s)	6, 232
BmgT120I	GGNCC	3 cut(s)	6, 165, 232
BmiI	GGNNCC	2 cut(s)	154, 166
BmrI	ACTGGG	1 cut(s)	54
BmuI	ACTGGG	1 cut(s)	54
BsaAI	YACGTR	1 cut(s)	271
BsaBI	GATNNNNATC	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
Bse1I	ACTGG	2 cut(s)	49, 156
Bse3DI	GCAATG	1 cut(s)	26
Bse8I	GATNNNNATC	1 cut(s)	351
BseGI	GGATG	1 cut(s)	343
BseJI	GATNNNNATC	1 cut(s)	351
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseMI	GCAATG	1 cut(s)	26
BseNI	ACTGG	2 cut(s)	49, 156
BseXI	GCAGC	1 cut(s)	69
Bsh1236I	CGCG	1 cut(s)	331
BshFI	GGCC	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	162
BsmAI	GTCTC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	167
Bsp143I	GATC	1 cut(s)	352
BspACI	CCGC	1 cut(s)	162
BspANI	GGCC	1 cut(s)	167
BspFNI	CGCG	1 cut(s)	331
BspLI	GGNNCC	2 cut(s)	154, 166
BspPI	GGATC	1 cut(s)	360
BsrDI	GCAATG	1 cut(s)	26
BsrI	ACTGG	2 cut(s)	49, 156
BssMI	GATC	1 cut(s)	352
BstBAI	YACGTR	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	343
BstFNI	CGCG	1 cut(s)	331
BstKTI	GATC	1 cut(s)	355
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 46, 88
BstUI	CGCG	1 cut(s)	331
BstV1I	GCAGC	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	1 cut(s)	167
BtsCI	GGATG	1 cut(s)	343
Cac8I	GCNNGC	1 cut(s)	117
Cfr13I	GGNCC	3 cut(s)	6, 165, 232
Csp6I	GTAC	1 cut(s)	75
CviAII	CATG	2 cut(s)	37, 169
CviJI	RGCY	6 cut(s)	49, 82, 91, 115, 129, 167
CviKI_1	RGCY	6 cut(s)	49, 82, 91, 115, 129, 167
CviQI	GTAC	1 cut(s)	75
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
DrdI	GACNNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	230
Eco47I	GGWCC	2 cut(s)	6, 232
EcoT22I	ATGCAT	1 cut(s)	42
FaeI	CATG	2 cut(s)	40, 172
FaiI	YATR	6 cut(s)	38, 42, 57, 170, 359, 361
FatI	CATG	2 cut(s)	36, 168
FauI	CCCGC	1 cut(s)	155
Fnu4HI	GCNGC	1 cut(s)	83
FokI	GGATG	1 cut(s)	350
Fsp4HI	GCNGC	1 cut(s)	83
GluI	GCNGC	1 cut(s)	83
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	1 cut(s)	219
Hin1II	CATG	2 cut(s)	40, 172
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	2 cut(s)	253, 295
HpaII	CCGG	1 cut(s)	219
Hpy188I	TCNGA	1 cut(s)	307
HpyAV	CCTTC	2 cut(s)	74, 248
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	3 cut(s)	26, 40, 172
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 46, 88
HpyF3I	CTNAG	1 cut(s)	78
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	2 cut(s)	40, 172
Kzo9I	GATC	1 cut(s)	352
LpnPI	CCDG	5 cut(s)	30, 53, 169, 222, 232
Lsp1109I	GCAGC	1 cut(s)	69
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MboII	GAAGA	2 cut(s)	248, 356
MflI	RGATCY	1 cut(s)	352
MluCI	AATT	2 cut(s)	175, 280
MnlI	CCTC	5 cut(s)	150, 245, 328, 334, 343
Mph1103I	ATGCAT	1 cut(s)	42
MspI	CCGG	1 cut(s)	219
MvnI	CGCG	1 cut(s)	331
MwoI	GCNNNNNNNGC	3 cut(s)	37, 46, 88
NdeII	GATC	1 cut(s)	352
NlaIII	CATG	2 cut(s)	40, 172
NlaIV	GGNNCC	2 cut(s)	154, 166
NmuCI	GTSAC	1 cut(s)	199
NsiI	ATGCAT	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	253, 295
PkrI	GCNGC	1 cut(s)	84
Ppu21I	YACGTR	1 cut(s)	271
PspN4I	GGNNCC	2 cut(s)	154, 166
PspPI	GGNCC	3 cut(s)	6, 165, 232
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
SatI	GCNGC	1 cut(s)	83
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	3 cut(s)	6, 165, 232
ScaI	AGTACT	1 cut(s)	76
SetI	ASST	6 cut(s)	8, 66, 84, 109, 117, 273
SinI	GGWCC	2 cut(s)	6, 232
Sse9I	AATT	2 cut(s)	175, 280
SsiI	CCGC	1 cut(s)	162
SspI	AATATT	1 cut(s)	311
TaiI	ACGT	1 cut(s)	273
TaqII	GACCGA	1 cut(s)	220
TasI	AATT	2 cut(s)	175, 280
TatI	WGTACW	1 cut(s)	74
TfiI	GAWTC	2 cut(s)	253, 295
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	2 cut(s)	117, 274
VpaK11BI	GGWCC	2 cut(s)	6, 232
ZrmI	AGTACT	1 cut(s)	76
Zsp2I	ATGCAT	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.