Rorug05G0185400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0016214
Physical Location & Seq
Forward (+)
17966430 .. 17967990
1561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0185400.1

Sequence Viewer

Length: 1059 bp
ATGGCTTCGATGCCATTGAATTTCACTAACCTCCTCAACAACGAATCAGTCCTCAGTGACCTTAATGAACCACACGATTTCCCGGCGAGTCAGTATCAGTCCAATGGTTCTACTTATGCTCATTCACCATATGAAGATTGCACTTATGAAGAGACTCCTACAAATGAAGTTTACACTTACGAAGAGACGCCACGTGCACCTAGCAACAAGAAAGCACAAAGACAAGCCAACTTCACAATCGAGGAAGACAAACTTCTTGTATCTGCATGGCTCAATATTGGCTTAGACCCGGTGAAAGGAGCCGATCAAAAGAAGAAACAATTCTGGAAAAGGATTACTGATTACTTTGAAAAACACAAGAAGTGGTCTGCTGAAAGGAGTGAAAAATCATTAACAAACCGTTGGTCAACAATCAGCAGCACTGTGAGTAAGTTTTGTGGACATTATGCTCAAATTGAACACTTACGGAGAAGTGGTTATACGGAACAAGATAAGATAGTGGAAGCAAAAGAGAATTTCAAGCTGGAGGAAGGTCATGCATTTGTACTTGATCATTGTTGGGTAATTTTGAGGTTTCAGCAAAAATGGATGGATGAACATCAAAAAATTGAAAGTAAGAAAAAGTTGAAGGCTCCTTCTAGTAAAGCTGCAGATTCTATCAATTTAGAAGACGATGATACGGAAGCTCCTGAACCTGCAAGCTTGAAGAGGCCAATTGGGAGAAAGGCTGCCAAGGAAGCTATCAAAAAGGCAAAATCCAAAGAGCAGGTTGGTGAAAATGAGAATGAATCTTCAAAAATCCGATCTGAGTTGGAAGAGTTGAGGGCAAGGAGATTAGAAAGTGACCGCATAAAGGCAGAACAATTTAAGTTGCTACTTGCTACTGAGCAAAAGCAAGTTTCTCTGAGAGAAAAGGAAATTGAACTTCAGGCTCGAAGTGAGGATGCTAAAATAATGTCTATGGATACTAGTGTCATGCCTCCATTTCAAGCAGAGTACTTTATTAGTCTTCAGAAGGAAATCTTGGCAAAAAGAGCTAGTAGGAATGAAAATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

352

Amino Acids

40.76

Weight (kDa)

6.5

Isoelectric Point (pI)

63.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 180 - 341 2.8e-20 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016214)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G50732
fragaria_vesca FvH4_3g23030
malus_domestica MD03G1198300.v1.1
prunus_persica Prupe.4G216700_v2.0.a1
pyrus_communis pycom03g14990
rosa_laevigata RLG00000033985
rosa_roxburghii Rroxscaffold_1G00040140 Rroxscaffold_1G00040870
rosa_rugosa Rorug05G0185400 Rorug05G0185500
rosa_samantha Rh5AG272300 Rh5BG276300 Rh5CG309000 Rh5DG284800
rosa_wichuraiana Rw5G025500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 703, 757
AciI CCGC 1 cut(s) 847
AcsI RAATTY 2 cut(s) 19, 514
AcuI CTGAAG 2 cut(s) 911, 995
AcvI CACGTG 1 cut(s) 194
AcyI GRCGYC 1 cut(s) 188
AfaI GTAC 2 cut(s) 546, 998
AfiI CCNNNNNNNGG 2 cut(s) 296, 853
AhlI ACTAGT 1 cut(s) 968
AjuI GAANNNNNNNTTGG 2 cut(s) 1007, 1039
AluBI AGCT 6 cut(s) 523, 647, 686, 702, 740, 1037
AluI AGCT 6 cut(s) 523, 647, 686, 702, 740, 1037
Alw21I GWGCWC 1 cut(s) 199
Alw26I GTCTC 2 cut(s) 146, 179
Alw44I GTGCAC 1 cut(s) 195
AoxI GGCC 1 cut(s) 710
ApaLI GTGCAC 1 cut(s) 195
ApeKI GCWGC 3 cut(s) 417, 647, 728
ApoI RAATTY 2 cut(s) 19, 514
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
Asp700I GAANNNNTTC 1 cut(s) 320
AsuC2I CCSGG 2 cut(s) 83, 290
AsuHPI GGTGA 3 cut(s) 117, 304, 785
BaeGI GKGCMC 1 cut(s) 199
BaeI ACNNNNGTAYC 2 cut(s) 957, 990
BarI GAAGNNNNNNTAC 2 cut(s) 463, 495
BbrPI CACGTG 1 cut(s) 194
BbsI GAAGAC 3 cut(s) 252, 675, 1001
Bbv12I GWGCWC 1 cut(s) 199
BbvI GCAGC 3 cut(s) 429, 634, 715
BccI CCATC 1 cut(s) 583
BciVI GTATCC 1 cut(s) 958
BclI TGATCA 1 cut(s) 550
BcnI CCSGG 2 cut(s) 83, 290
BcoDI GTCTC 2 cut(s) 146, 179
BcuI ACTAGT 1 cut(s) 968
BfaI CTAG 4 cut(s) 201, 639, 969, 1038
BfmI CTRYAG 1 cut(s) 648
BfuAI ACCTGC 2 cut(s) 703, 757
BfuI GTATCC 1 cut(s) 958
BisI GCNGC 3 cut(s) 418, 648, 729
BlsI GCNGC 3 cut(s) 419, 649, 730
BmcAI AGTACT 1 cut(s) 998
Bme1390I CCNGG 2 cut(s) 83, 290
BmiI GGNNCC 2 cut(s) 301, 633
BmrFI CCNGG 2 cut(s) 83, 290
BmsI GCATC 1 cut(s) 934
BpiI GAAGAC 3 cut(s) 252, 675, 1001
BpmI CTGGAG 1 cut(s) 545
BpuMI CCSGG 2 cut(s) 83, 290
BsaAI YACGTR 1 cut(s) 194
BsaBI GATNNNNATC 1 cut(s) 597
BsaHI GRCGYC 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 732
BsaXI ACNNNNNCTCC 4 cut(s) 460, 490, 670, 700
Bsc4I CCNNNNNNNGG 2 cut(s) 296, 853
Bse8I GATNNNNATC 1 cut(s) 597
BseDI CCNNGG 1 cut(s) 732
BseGI GGATG 3 cut(s) 594, 598, 949
BseJI GATNNNNATC 1 cut(s) 597
BseLI CCNNNNNNNGG 2 cut(s) 296, 853
BseMII CTCAG 4 cut(s) 67, 798, 876, 896
BseRI GAGGAG 1 cut(s) 23
BseSI GKGCMC 1 cut(s) 199
BseXI GCAGC 3 cut(s) 429, 634, 715
BshFI GGCC 1 cut(s) 712
BsiHKAI GWGCWC 1 cut(s) 199
BsiSI CCGG 2 cut(s) 83, 290
BslI CCNNNNNNNGG 2 cut(s) 296, 853
BsmAI GTCTC 2 cut(s) 146, 179
BsmBI CGTCTC 1 cut(s) 179
BsnI GGCC 1 cut(s) 712
Bsp1286I GDGCHC 1 cut(s) 199
Bsp143I GATC 3 cut(s) 304, 550, 803
BspACI CCGC 1 cut(s) 847
BspANI GGCC 1 cut(s) 712
BspCNI CTCAG 4 cut(s) 66, 799, 877, 897
BspLI GGNNCC 2 cut(s) 301, 633
BspMAI CTGCAG 1 cut(s) 652
BspMI ACCTGC 2 cut(s) 703, 757
BssECI CCNNGG 1 cut(s) 732
BssMI GATC 3 cut(s) 304, 550, 803
BssNI GRCGYC 1 cut(s) 188
BssT1I CCWWGG 1 cut(s) 732
Bst4CI ACNGT 2 cut(s) 401, 424
Bst6I CTCTTC 4 cut(s) 144, 177, 701, 810
BstACI GRCGYC 1 cut(s) 188
BstBAI YACGTR 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 700
BstDEI CTNAG 5 cut(s) 53, 283, 807, 885, 905
BstF5I GGATG 3 cut(s) 594, 598, 949
BstKTI GATC 3 cut(s) 307, 553, 806
BstMAI GTCTC 2 cut(s) 146, 179
BstMBI GATC 3 cut(s) 304, 550, 803
BstMWI GCNNNNNNNGC 2 cut(s) 737, 1034
BstSCI CCNGG 2 cut(s) 81, 288
BstSFI CTRYAG 1 cut(s) 648
BstSLI GKGCMC 1 cut(s) 199
BstV1I GCAGC 3 cut(s) 429, 634, 715
BstV2I GAAGAC 3 cut(s) 252, 675, 1001
BsuI GTATCC 1 cut(s) 958
BsuRI GGCC 1 cut(s) 712
BtsCI GGATG 3 cut(s) 594, 598, 949
BtsIMutI CAGTG 2 cut(s) 61, 420
BveI ACCTGC 2 cut(s) 703, 757
Cac8I GCNNGC 1 cut(s) 700
CseI GACGC 1 cut(s) 196
Csp6I GTAC 2 cut(s) 545, 997
CviAII CATG 3 cut(s) 267, 536, 976
CviQI GTAC 2 cut(s) 545, 997
DdeI CTNAG 5 cut(s) 53, 283, 807, 885, 905
DpnI GATC 3 cut(s) 306, 552, 805
DpnII GATC 3 cut(s) 304, 550, 803
Eam1104I CTCTTC 4 cut(s) 144, 177, 701, 810
EarI CTCTTC 4 cut(s) 144, 177, 701, 810
Eco130I CCWWGG 1 cut(s) 732
Eco57I CTGAAG 2 cut(s) 911, 995
Eco72I CACGTG 1 cut(s) 194
EcoT14I CCWWGG 1 cut(s) 732
EcoT22I ATGCAT 1 cut(s) 541
ErhI CCWWGG 1 cut(s) 732
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 3 cut(s) 270, 539, 979
FalI AAGNNNNNCTT 4 cut(s) 237, 269, 1007, 1039
FatI CATG 3 cut(s) 266, 535, 975
FauNDI CATATG 1 cut(s) 130
FbaI TGATCA 1 cut(s) 550
Fnu4HI GCNGC 3 cut(s) 418, 648, 729
FokI GGATG 3 cut(s) 601, 605, 956
Fsp4HI GCNGC 3 cut(s) 418, 648, 729
FspBI CTAG 4 cut(s) 201, 639, 969, 1038
GluI GCNGC 3 cut(s) 418, 648, 729
GsuI CTGGAG 1 cut(s) 545
HaeIII GGCC 1 cut(s) 712
HapII CCGG 2 cut(s) 83, 290
HgaI GACGC 1 cut(s) 196
Hin1I GRCGYC 1 cut(s) 188
Hin1II CATG 3 cut(s) 270, 539, 979
HincII GTYRAC 1 cut(s) 408
HindII GTYRAC 1 cut(s) 408
HindIII AAGCTT 1 cut(s) 700
HinfI GANTC 5 cut(s) 44, 88, 154, 653, 788
HpaII CCGG 2 cut(s) 83, 290
HphI GGTGA 3 cut(s) 117, 304, 785
Hpy166II GTNNAC 4 cut(s) 172, 197, 408, 440
Hpy188I TCNGA 4 cut(s) 803, 808, 906, 1014
Hpy188III TCNNGA 2 cut(s) 325, 689
Hpy8I GTNNAC 4 cut(s) 172, 197, 408, 440
HpyAV CCTTC 4 cut(s) 524, 622, 645, 1009
HpyCH4III ACNGT 2 cut(s) 401, 424
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 6 cut(s) 141, 197, 266, 539, 650, 698
HpyF10VI GCNNNNNNNGC 2 cut(s) 737, 1034
HpyF3I CTNAG 5 cut(s) 53, 283, 807, 885, 905
HpySE526I ACGT 1 cut(s) 193
Hsp92I GRCGYC 1 cut(s) 188
Hsp92II CATG 3 cut(s) 270, 539, 979
Ksp22I TGATCA 1 cut(s) 550
Kzo9I GATC 3 cut(s) 304, 550, 803
LmnI GCTCC 3 cut(s) 299, 637, 691
LpnPI CCDG 8 cut(s) 96, 303, 310, 509, 702, 708, 752, 914
Lsp1109I GCAGC 3 cut(s) 429, 634, 715
LweI GCATC 1 cut(s) 934
MaeI CTAG 4 cut(s) 201, 639, 969, 1038
MaeII ACGT 1 cut(s) 193
MaeIII GTNAC 2 cut(s) 56, 842
MalI GATC 3 cut(s) 306, 552, 805
MboI GATC 3 cut(s) 304, 550, 803
MfeI CAATTG 1 cut(s) 714
MhlI GDGCHC 1 cut(s) 199
MlyI GAGTC 2 cut(s) 97, 148
MmeI TCCRAC 1 cut(s) 792
Mph1103I ATGCAT 1 cut(s) 541
MroXI GAANNNNTTC 1 cut(s) 320
MseI TTAA 3 cut(s) 63, 392, 867
MspI CCGG 2 cut(s) 83, 290
MspR9I CCNGG 2 cut(s) 83, 290
MunI CAATTG 1 cut(s) 714
MwoI GCNNNNNNNGC 2 cut(s) 737, 1034
NciI CCSGG 2 cut(s) 83, 290
NdeI CATATG 1 cut(s) 130
NdeII GATC 3 cut(s) 304, 550, 803
NlaIII CATG 3 cut(s) 270, 539, 979
NlaIV GGNNCC 2 cut(s) 301, 633
NmuCI GTSAC 2 cut(s) 56, 842
NsiI ATGCAT 1 cut(s) 541
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 3 cut(s) 44, 653, 788
PkrI GCNGC 3 cut(s) 419, 649, 730
PleI GAGTC 2 cut(s) 96, 148
PmaCI CACGTG 1 cut(s) 194
PmlI CACGTG 1 cut(s) 194
PpsI GAGTC 2 cut(s) 96, 148
Ppu21I YACGTR 1 cut(s) 194
PspCI CACGTG 1 cut(s) 194
PspN4I GGNNCC 2 cut(s) 301, 633
PstI CTGCAG 1 cut(s) 652
RsaI GTAC 2 cut(s) 546, 998
RsaNI GTAC 2 cut(s) 545, 997
SaqAI TTAA 3 cut(s) 63, 392, 867
SatI GCNGC 3 cut(s) 418, 648, 729
Sau3AI GATC 3 cut(s) 304, 550, 803
ScaI AGTACT 1 cut(s) 998
SchI GAGTC 2 cut(s) 97, 148
ScrFI CCNGG 2 cut(s) 83, 290
SduI GDGCHC 1 cut(s) 199
SfaNI GCATC 1 cut(s) 934
SfcI CTRYAG 1 cut(s) 648
SpeI ACTAGT 1 cut(s) 968
SsiI CCGC 1 cut(s) 847
SspI AATATT 1 cut(s) 277
SspMI CTAG 4 cut(s) 201, 639, 969, 1038
StyD4I CCNGG 2 cut(s) 81, 288
StyI CCWWGG 1 cut(s) 732
TaaI ACNGT 2 cut(s) 401, 424
TaiI ACGT 1 cut(s) 196
TaqI TCGA 3 cut(s) 8, 240, 934
TatI WGTACW 2 cut(s) 544, 996
TfiI GAWTC 3 cut(s) 44, 653, 788
Tru1I TTAA 3 cut(s) 63, 392, 867
Tru9I TTAA 3 cut(s) 63, 392, 867
TscAI CASTG 2 cut(s) 61, 427
TseFI GTSAC 2 cut(s) 56, 842
TseI GCWGC 3 cut(s) 417, 647, 728
Tsp45I GTSAC 2 cut(s) 56, 842
TspDTI ATGAA 6 cut(s) 81, 147, 162, 180, 609, 801
TspGWI ACGGA 3 cut(s) 481, 497, 695
TspRI CASTG 2 cut(s) 61, 427
VneI GTGCAC 1 cut(s) 195
XapI RAATTY 2 cut(s) 19, 514
XmnI GAANNNNTTC 1 cut(s) 320
XspI CTAG 4 cut(s) 201, 639, 969, 1038
ZrmI AGTACT 1 cut(s) 998
Zsp2I ATGCAT 1 cut(s) 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.