Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001141

Physical Location & Seq

Genomic Coordinates Forward (+)

17974828 .. 17979043

Gene Structure 4216 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0185500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGTTAAAGCAGTACTGGGTTGCTTTCTTTGTGGTGGTTTTATGGGGTTTTGGATTCAGAGCTATAGATGCCAGTGCTGGTGATGCTGATCCTCATTATAGGGCTTGTTTACAACAATGTGAAGAAACTGGATGTGTAGCGCAGAGATGCTTTCCACATTGCAATTTCTCTTCAGGTGGGGTTTCCGTTGATGGGCCATGGTTCCTGCAAGAACCTCTTTATTTGCAGTGGAAACAATGGGACTGTCAGAGTGATTGCCGTTACTATTGTATGGCTGACAGAGAGAAAGAAAGAGAAGCAGCTGGTTATGGCCCAGTCAAATATCATGGTAAATGGCCCTTCAAGCGCGTTTATGGAATCCAGGAGCCTGCTTCTGTAGCTTTCTCTGCGCTCAACCTTGCTATGCATTTTCATGGTTGGGTATCATTTATCATCCTTTTATTCTATAAGTTACCATTGAGACGAGATAAGAAGGCATATTATGACTATGCCGGTTTGTGGCATCTATATGGTTTCTTATCCTTGAACAGCTGGTTCTGGAGTGCTGTTTTCCATAGTAGAGATGTGGATTTGACCGAAAAATTAGATTACTCAGCTGCAGTGGCATTACTTGGGTACTCGCTCATTCTTGCCATACTCAGAAGTTTTGACGTGAGGGATGATGCTGTCAGAGTTATGGTTGCTGCTCCACTGCTTGCTTTTGTAACTACCCACATATTGTATCTCAACTTTTATAAACTGGATTATGGTTGGAACATGAAAGTTTGTGTTGTCATGGCGGTGGCTCAACTTCTTATCTGGGCAGTTTGGGCTGGTGTCACCCGCCATCCATCTCGTTGGAAATTGTGGCTGGTAGTAGTTGGAGGCGGTCTTGCAATGCTCCTAGAAATCTATGATTTCCCCCCATATGAAGGATTTCTGGATGCTCATGCGGTCTGGCATGCCACCACCATCCCCCTAACTTACATTTGGTGGAGTTTCATCAGAGACGACGCTGAGTTCCTAACCTCTAACCAAGTAAAGAAGTTGGCAAAGAAGGCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM Ribonuclease_3 dsrm

Protein Analysis

348

Amino Acids

40.25

Weight (kDa)

8.27

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Per1	PF04080	72 - 332	9.4e-99	Per1-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20420
fragaria_vesca	FvH4_3g23250
malus_domestica	MD03G1196200.v1.1 MD11G1212500.v1.1
prunus_persica	Prupe.4G219200_v2.0.a1 Prupe.4G219200_v2.0.a1 Prupe.4G219400_v2.0.a1 Prupe.4G219400_v2.0.a1
pyrus_communis	pycom03g14830 pycom11g18750
rosa_chinensis	RchiOBHm_Chr5g0040511 RchiOBHm_Chr5g0040931 RchiOBHm_Chr5g0040941
rosa_laevigata	RLG00000033986 RLG00000034014 RLG00000034016 RLG00000034026
rosa_multiflora	Rmu_co8051550.1_g000001 Rmu_co8392905.1_g000001 Rmu_sc0002475.1_g000019 Rmu_sc0002848.1_g000007 Rmu_sc0006651.1_g000007 Rmu_sc0006651.1_g000008 Rmu_sc0008620.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039580 Rroxscaffold_1G00039750 Rroxscaffold_1G00039760 Rroxscaffold_1G00040130 Rroxscaffold_1G00040850
rosa_rugosa	Rorug02G0350900 Rorug02G0350900 Rorug02G0351000 Rorug05G0185500 Rorug05G0188700 Rorug05G0188900 Rorug05G0188900
rosa_samantha	Rh2AG398700 Rh2BG409100 Rh2CG385500 Rh2CG540800 Rh2DG418900 Rh5AG272400 Rh5AG274300 Rh5AG274400 Rh5AG344200 Rh5BG276400 Rh5BG279300 Rh5BG279400 Rh5CG308900 Rh5CG311400 Rh5CG311600 Rh5DG284900 Rh5DG287500
rosa_wichuraiana	Rw2G032480 Rw5G025510 Rw5G025770 Rw5G025780 Rw5G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	735
AccII	CGCG	1 cut(s)	348
AciI	CCGC	4 cut(s)	779, 823, 867, 932
AclWI	GGATC	1 cut(s)	83
AcuI	CTGAAG	1 cut(s)	156
AfaI	GTAC	2 cut(s)	14, 617
AfiI	CCNNNNNNNGG	3 cut(s)	192, 498, 911
AgsI	TTSAA	2 cut(s)	343, 526
AjiI	CACGTC	1 cut(s)	652
AjnI	CCWGG	1 cut(s)	360
AluBI	AGCT	5 cut(s)	62, 302, 380, 531, 596
AluI	AGCT	5 cut(s)	62, 302, 380, 531, 596
Alw26I	GTCTC	2 cut(s)	454, 981
AlwI	GGATC	1 cut(s)	83
AoxI	GGCC	3 cut(s)	194, 310, 335
ApeKI	GCWGC	3 cut(s)	299, 596, 683
Asp700I	GAANNNNTTC	1 cut(s)	915
AspLEI	GCGC	3 cut(s)	142, 348, 391
AspS9I	GGNCC	3 cut(s)	194, 311, 336
AsuHPI	GGTGA	2 cut(s)	92, 811
BbvI	GCAGC	3 cut(s)	311, 583, 670
BccI	CCATC	4 cut(s)	185, 834, 838, 959
BceAI	ACGGC	1 cut(s)	243
BciT130I	CCWGG	1 cut(s)	362
BcoDI	GTCTC	2 cut(s)	454, 981
BfaI	CTAG	1 cut(s)	884
BfmI	CTRYAG	3 cut(s)	63, 375, 597
BisI	GCNGC	3 cut(s)	300, 597, 684
BlsI	GCNGC	3 cut(s)	301, 598, 685
BmcAI	AGTACT	1 cut(s)	14
Bme1390I	CCNGG	1 cut(s)	362
BmgBI	CACGTC	1 cut(s)	652
BmgT120I	GGNCC	3 cut(s)	194, 311, 336
BmiI	GGNNCC	2 cut(s)	203, 366
BmrFI	CCNGG	1 cut(s)	362
BmrI	ACTGGG	2 cut(s)	25, 308
BmsI	GCATC	6 cut(s)	58, 73, 137, 511, 652, 913
BmuI	ACTGGG	2 cut(s)	25, 308
BpmI	CTGGAG	1 cut(s)	559
BsaBI	GATNNNNATC	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	197
Bsc4I	CCNNNNNNNGG	3 cut(s)	192, 498, 911
Bse118I	RCCGGY	1 cut(s)	491
Bse1I	ACTGG	5 cut(s)	20, 72, 133, 314, 744
Bse3DI	GCAATG	2 cut(s)	157, 882
Bse8I	GATNNNNATC	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	362
BseDI	CCNNGG	1 cut(s)	197
BseGI	GGATG	6 cut(s)	137, 432, 664, 826, 928, 951
BseJI	GATNNNNATC	1 cut(s)	87
BseLI	CCNNNNNNNGG	3 cut(s)	192, 498, 911
BseMI	GCAATG	2 cut(s)	157, 882
BseMII	CTCAG	3 cut(s)	606, 652, 987
BseNI	ACTGG	5 cut(s)	20, 72, 133, 314, 744
BseXI	GCAGC	3 cut(s)	311, 583, 670
Bsh1236I	CGCG	1 cut(s)	348
BshFI	GGCC	3 cut(s)	196, 312, 337
BsiSI	CCGG	1 cut(s)	492
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	3 cut(s)	192, 498, 911
BsmAI	GTCTC	2 cut(s)	454, 981
BsmBI	CGTCTC	2 cut(s)	454, 981
BsmFI	GGGAC	1 cut(s)	254
BsnI	GGCC	3 cut(s)	196, 312, 337
Bsp143I	GATC	1 cut(s)	88
Bsp19I	CCATGG	1 cut(s)	197
BspACI	CCGC	4 cut(s)	779, 823, 867, 932
BspANI	GGCC	3 cut(s)	196, 312, 337
BspCNI	CTCAG	3 cut(s)	605, 651, 988
BspFNI	CGCG	1 cut(s)	348
BspLI	GGNNCC	2 cut(s)	203, 366
BspMAI	CTGCAG	1 cut(s)	601
BspPI	GGATC	1 cut(s)	83
BsrDI	GCAATG	2 cut(s)	157, 882
BsrFI	RCCGGY	1 cut(s)	491
BsrI	ACTGG	5 cut(s)	20, 72, 133, 314, 744
BssAI	RCCGGY	1 cut(s)	491
BssECI	CCNNGG	1 cut(s)	197
BssMI	GATC	1 cut(s)	88
BssT1I	CCWWGG	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	1 cut(s)	245
Bst6I	CTCTTC	1 cut(s)	175
BstC8I	GCNNGC	3 cut(s)	369, 696, 942
BstDEI	CTNAG	3 cut(s)	592, 638, 996
BstDSI	CCRYGG	1 cut(s)	197
BstF5I	GGATG	6 cut(s)	137, 432, 664, 826, 928, 951
BstFNI	CGCG	1 cut(s)	348
BstHHI	GCGC	3 cut(s)	142, 348, 391
BstKTI	GATC	1 cut(s)	91
BstMAI	GTCTC	2 cut(s)	454, 981
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	8 cut(s)	68, 83, 343, 377, 386, 602, 809, 1037
BstNI	CCWGG	1 cut(s)	362
BstNSI	RCATGY	1 cut(s)	944
BstSCI	CCNGG	1 cut(s)	360
BstSFI	CTRYAG	3 cut(s)	63, 375, 597
BstUI	CGCG	1 cut(s)	348
BstV1I	GCAGC	3 cut(s)	311, 583, 670
BstXI	CCANNNNNNTGG	1 cut(s)	837
BsuRI	GGCC	3 cut(s)	196, 312, 337
BtgI	CCRYGG	1 cut(s)	197
BtrI	CACGTC	1 cut(s)	652
BtsCI	GGATG	6 cut(s)	137, 432, 664, 826, 928, 951
BtsI	GCAGTG	3 cut(s)	233, 606, 689
BtsIMutI	CAGTG	4 cut(s)	79, 233, 606, 689
Cac8I	GCNNGC	3 cut(s)	369, 696, 942
CfoI	GCGC	3 cut(s)	142, 348, 391
Cfr10I	RCCGGY	1 cut(s)	491
Cfr13I	GGNCC	3 cut(s)	194, 311, 336
CseI	GACGC	1 cut(s)	1001
Csp6I	GTAC	2 cut(s)	13, 616
CviAII	CATG	7 cut(s)	198, 326, 413, 757, 775, 929, 941
CviQI	GTAC	2 cut(s)	13, 616
DdeI	CTNAG	3 cut(s)	592, 638, 996
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	175
EarI	CTCTTC	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	197
Eco57I	CTGAAG	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	360
EcoT14I	CCWWGG	1 cut(s)	197
EcoT22I	ATGCAT	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	197
Esp3I	CGTCTC	2 cut(s)	454, 981
FaeI	CATG	7 cut(s)	201, 329, 416, 760, 778, 932, 944
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	7 cut(s)	197, 325, 412, 756, 774, 928, 940
FauI	CCCGC	1 cut(s)	830
FauNDI	CATATG	1 cut(s)	907
Fnu4HI	GCNGC	3 cut(s)	300, 597, 684
FokI	GGATG	6 cut(s)	144, 419, 671, 813, 935, 938
Fsp4HI	GCNGC	3 cut(s)	300, 597, 684
FspBI	CTAG	1 cut(s)	884
GlaI	GCGC	3 cut(s)	141, 347, 390
GluI	GCNGC	3 cut(s)	300, 597, 684
GsuI	CTGGAG	1 cut(s)	559
HaeIII	GGCC	3 cut(s)	196, 312, 337
HapII	CCGG	1 cut(s)	492
HgaI	GACGC	1 cut(s)	1001
HhaI	GCGC	3 cut(s)	142, 348, 391
Hin1II	CATG	7 cut(s)	201, 329, 416, 760, 778, 932, 944
Hin6I	GCGC	3 cut(s)	140, 346, 389
HinP1I	GCGC	3 cut(s)	140, 346, 389
HinfI	GANTC	2 cut(s)	54, 357
HpaII	CCGG	1 cut(s)	492
HphI	GGTGA	2 cut(s)	92, 811
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	5 cut(s)	59, 249, 641, 671, 986
Hpy188III	TCNNGA	2 cut(s)	538, 920
Hpy8I	GTNNAC	1 cut(s)	110
Hpy99I	CGWCG	1 cut(s)	995
HpyAV	CCTTC	4 cut(s)	349, 466, 905, 1030
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4IV	ACGT	1 cut(s)	651
HpyCH4V	TGCA	6 cut(s)	162, 208, 226, 406, 599, 875
HpyF10VI	GCNNNNNNNGC	8 cut(s)	68, 83, 343, 377, 386, 602, 809, 1037
HpyF3I	CTNAG	3 cut(s)	592, 638, 996
HpySE526I	ACGT	1 cut(s)	651
Hsp92II	CATG	7 cut(s)	201, 329, 416, 760, 778, 932, 944
HspAI	GCGC	3 cut(s)	140, 346, 389
Kzo9I	GATC	1 cut(s)	88
LmnI	GCTCC	3 cut(s)	364, 691, 885
Lsp1109I	GCAGC	3 cut(s)	311, 583, 670
LweI	GCATC	6 cut(s)	58, 73, 137, 511, 652, 913
MaeI	CTAG	1 cut(s)	884
MaeII	ACGT	1 cut(s)	651
MaeIII	GTNAC	4 cut(s)	260, 450, 703, 817
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	2 cut(s)	134, 162
MluCI	AATT	3 cut(s)	163, 581, 842
MmeI	TCCRAC	3 cut(s)	731, 818, 841
MnlI	CCTC	5 cut(s)	102, 225, 648, 857, 1018
Mph1103I	ATGCAT	1 cut(s)	408
MroXI	GAANNNNTTC	1 cut(s)	915
MseI	TTAA	1 cut(s)	5
MslI	CAYNNNNRTG	3 cut(s)	411, 507, 779
MspA1I	CMGCKG	3 cut(s)	302, 531, 596
MspI	CCGG	1 cut(s)	492
MspR9I	CCNGG	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	362
MvnI	CGCG	1 cut(s)	348
MwoI	GCNNNNNNNGC	8 cut(s)	68, 83, 343, 377, 386, 602, 809, 1037
NcoI	CCATGG	1 cut(s)	197
NdeI	CATATG	1 cut(s)	907
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	7 cut(s)	201, 329, 416, 760, 778, 932, 944
NlaIV	GGNNCC	2 cut(s)	203, 366
NmuCI	GTSAC	1 cut(s)	817
NsiI	ATGCAT	1 cut(s)	408
NspI	RCATGY	1 cut(s)	944
PaeI	GCATGC	1 cut(s)	944
PdmI	GAANNNNTTC	1 cut(s)	915
PfeI	GAWTC	2 cut(s)	54, 357
PfoI	TCCNGGA	1 cut(s)	360
PkrI	GCNGC	3 cut(s)	301, 598, 685
PsiI	TTATAA	1 cut(s)	735
Psp6I	CCWGG	1 cut(s)	360
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	2 cut(s)	203, 366
PspPI	GGNCC	3 cut(s)	194, 311, 336
PstI	CTGCAG	1 cut(s)	601
PvuII	CAGCTG	3 cut(s)	302, 531, 596
RsaI	GTAC	2 cut(s)	14, 617
RsaNI	GTAC	2 cut(s)	13, 616
RseI	CAYNNNNRTG	3 cut(s)	411, 507, 779
SaqAI	TTAA	1 cut(s)	5
SatI	GCNGC	3 cut(s)	300, 597, 684
Sau3AI	GATC	1 cut(s)	88
Sau96I	GGNCC	3 cut(s)	194, 311, 336
ScaI	AGTACT	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	362
SfaNI	GCATC	6 cut(s)	58, 73, 137, 511, 652, 913
SfcI	CTRYAG	3 cut(s)	63, 375, 597
SmiMI	CAYNNNNRTG	3 cut(s)	411, 507, 779
SphI	GCATGC	1 cut(s)	944
Sse9I	AATT	3 cut(s)	163, 581, 842
SsiI	CCGC	4 cut(s)	779, 823, 867, 932
SspMI	CTAG	1 cut(s)	884
StyD4I	CCNGG	1 cut(s)	360
StyI	CCWWGG	1 cut(s)	197
TaaI	ACNGT	1 cut(s)	245
TaiI	ACGT	1 cut(s)	654
TaqII	GACCGA	1 cut(s)	590
TasI	AATT	3 cut(s)	163, 581, 842
TatI	WGTACW	1 cut(s)	12
TfiI	GAWTC	2 cut(s)	54, 357
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TscAI	CASTG	4 cut(s)	79, 233, 606, 696
TseFI	GTSAC	1 cut(s)	817
TseI	GCWGC	3 cut(s)	299, 596, 683
Tsp45I	GTSAC	1 cut(s)	817
TspDTI	ATGAA	4 cut(s)	401, 773, 924, 970
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	4 cut(s)	79, 233, 606, 696
XceI	RCATGY	1 cut(s)	944
XmnI	GAANNNNTTC	1 cut(s)	915
XspI	CTAG	1 cut(s)	884
ZrmI	AGTACT	1 cut(s)	14
Zsp2I	ATGCAT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.