Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001141

Physical Location & Seq

Genomic Coordinates Forward (+)

36910542 .. 36911366

Gene Structure 825 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G025780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGAACGGAGGATCTTACGAGAAAATCCCCACCGTGACACCACTGGACCTCCACACGCCGTCACCGGAAATGAAAGAATCGGTGGAAGCCGTGGAGCGGATCGTACAACATGACTTCAAGAACAACAAGAAGCTTCTAGAGGAAGCTCTCACCCACCCCTCATTCCGCGCAAGCGACGCCGTTTCGTATCAGCGGCTGGCGTTTCTCGGCGACGCCGTTCTTGGCCTCGCTGTAAGTAATTACCTCTTTCATGCTTACCCTGGAATTGACCAAGGTGACCTCACTGAGCTACGCTCCGCTAACGTCAGCAAAGAGAGGTTCGCACGTGTCGCTGTGCGACATGGGCTTTATACCTACGTTCGCCGCACTGCAACTGCTGCTCTCGATGATAAGGTTAGGGAGTTTAGTGAAGTTGTAAGCCGAGAAGAGGAGAAGACGCCGGTATATAGAGGTTCTGTAGAAGCCTCCAGAGTTCTTGCAGAGATTGTGGAGTCTGTGGCTGGTGCTATTTACGTTGACTTGAATTTGATCTCGAAAACCTTTGGAAGATTTTTGGGCATGTTTTGGAGCCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM Ribonuclease_3 dsrm

Protein Analysis

191

Amino Acids

21.36

Weight (kDa)

5.98

Isoelectric Point (pI)

28.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonucleas_3_3	PF14622	42 - 173	5.2e-21	Ribonuclease-III-like
Ribonuclease_3	PF00636	64 - 173	1.3e-22	Ribonuclease III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20420
fragaria_vesca	FvH4_3g23250
malus_domestica	MD03G1196200.v1.1 MD11G1212500.v1.1
prunus_persica	Prupe.4G219200_v2.0.a1 Prupe.4G219200_v2.0.a1 Prupe.4G219400_v2.0.a1 Prupe.4G219400_v2.0.a1
pyrus_communis	pycom03g14830 pycom11g18750
rosa_chinensis	RchiOBHm_Chr5g0040511 RchiOBHm_Chr5g0040931 RchiOBHm_Chr5g0040941
rosa_laevigata	RLG00000033986 RLG00000034014 RLG00000034016 RLG00000034026
rosa_multiflora	Rmu_co8051550.1_g000001 Rmu_co8392905.1_g000001 Rmu_sc0002475.1_g000019 Rmu_sc0002848.1_g000007 Rmu_sc0006651.1_g000007 Rmu_sc0006651.1_g000008 Rmu_sc0008620.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039580 Rroxscaffold_1G00039750 Rroxscaffold_1G00039760 Rroxscaffold_1G00040130 Rroxscaffold_1G00040850
rosa_rugosa	Rorug02G0350900 Rorug02G0350900 Rorug02G0351000 Rorug05G0185500 Rorug05G0188700 Rorug05G0188900 Rorug05G0188900
rosa_samantha	Rh2AG398700 Rh2BG409100 Rh2CG385500 Rh2CG540800 Rh2DG418900 Rh5AG272400 Rh5AG274300 Rh5AG274400 Rh5AG344200 Rh5BG276400 Rh5BG279300 Rh5BG279400 Rh5CG308900 Rh5CG311400 Rh5CG311600 Rh5DG284900 Rh5DG287500
rosa_wichuraiana	Rw2G032480 Rw5G025510 Rw5G025770 Rw5G025780 Rw5G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	97
AccII	CGCG	1 cut(s)	168
AciI	CCGC	5 cut(s)	97, 166, 193, 297, 364
AclWI	GGATC	2 cut(s)	19, 107
AcsI	RAATTY	1 cut(s)	523
AcvI	CACGTG	1 cut(s)	326
AcyI	GRCGYC	3 cut(s)	177, 213, 437
AfaI	GTAC	1 cut(s)	105
AfiI	CCNNNNNNNGG	2 cut(s)	96, 427
AflIII	ACRYGT	1 cut(s)	325
AgsI	TTSAA	2 cut(s)	118, 523
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	3 cut(s)	133, 146, 289
AluI	AGCT	3 cut(s)	133, 146, 289
AlwI	GGATC	2 cut(s)	19, 107
AlwNI	CAGNNNCTG	1 cut(s)	196
AoxI	GGCC	1 cut(s)	223
ApeKI	GCWGC	1 cut(s)	377
ApoI	RAATTY	1 cut(s)	523
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	46
AsuHPI	GGTGA	3 cut(s)	54, 142, 287
AvaII	GGWCC	1 cut(s)	46
BbrPI	CACGTG	1 cut(s)	326
BbsI	GAAGAC	1 cut(s)	440
BbvI	GCAGC	1 cut(s)	364
BceAI	ACGGC	4 cut(s)	43, 74, 164, 200
BciT130I	CCWGG	1 cut(s)	261
BfaI	CTAG	1 cut(s)	137
BfmI	CTRYAG	2 cut(s)	456, 572
BisI	GCNGC	3 cut(s)	194, 364, 378
BlsI	GCNGC	3 cut(s)	195, 365, 379
Bme1390I	CCNGG	1 cut(s)	261
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	569
BmrFI	CCNGG	1 cut(s)	261
BpiI	GAAGAC	1 cut(s)	440
BplI	GAGNNNNNCTC	2 cut(s)	278, 310
BpmI	CTGGAG	1 cut(s)	451
BsaAI	YACGTR	1 cut(s)	326
BsaHI	GRCGYC	3 cut(s)	177, 213, 437
BsaJI	CCNNGG	3 cut(s)	90, 259, 271
BsaWI	WCCGGW	1 cut(s)	64
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 427
Bse118I	RCCGGY	1 cut(s)	439
Bse1I	ACTGG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	3 cut(s)	90, 259, 271
BseLI	CCNNNNNNNGG	2 cut(s)	96, 427
BseMII	CTCAG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	443
BseXI	GCAGC	1 cut(s)	364
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	1 cut(s)	225
BsiSI	CCGG	2 cut(s)	65, 440
BslI	CCNNNNNNNGG	2 cut(s)	96, 427
BsnI	GGCC	1 cut(s)	225
Bsp143I	GATC	3 cut(s)	11, 99, 528
BspACI	CCGC	5 cut(s)	97, 166, 193, 297, 364
BspANI	GGCC	1 cut(s)	225
BspCNI	CTCAG	1 cut(s)	277
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	569
BspPI	GGATC	2 cut(s)	19, 107
BsrBI	CCGCTC	1 cut(s)	97
BsrFI	RCCGGY	1 cut(s)	439
BsrI	ACTGG	1 cut(s)	48
BssAI	RCCGGY	1 cut(s)	439
BssECI	CCNNGG	3 cut(s)	90, 259, 271
BssMI	GATC	3 cut(s)	11, 99, 528
BssNI	GRCGYC	3 cut(s)	177, 213, 437
BssT1I	CCWWGG	1 cut(s)	271
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	34
Bst6I	CTCTTC	1 cut(s)	420
BstACI	GRCGYC	3 cut(s)	177, 213, 437
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstBAI	YACGTR	1 cut(s)	326
BstC8I	GCNNGC	2 cut(s)	172, 198
BstDEI	CTNAG	1 cut(s)	285
BstDSI	CCRYGG	1 cut(s)	90
BstEII	GGTNACC	1 cut(s)	275
BstFNI	CGCG	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	3 cut(s)	14, 102, 531
BstMBI	GATC	3 cut(s)	11, 99, 528
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 329, 343, 377
BstNI	CCWGG	1 cut(s)	261
BstNSI	RCATGY	1 cut(s)	562
BstPI	GGTNACC	1 cut(s)	275
BstSCI	CCNGG	1 cut(s)	259
BstSFI	CTRYAG	2 cut(s)	456, 572
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	364
BstV2I	GAAGAC	1 cut(s)	440
BstX2I	RGATCY	1 cut(s)	11
BstYI	RGATCY	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	225
BtgI	CCRYGG	1 cut(s)	90
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	3 cut(s)	41, 282, 366
Cac8I	GCNNGC	2 cut(s)	172, 198
CaiI	CAGNNNCTG	1 cut(s)	196
CfoI	GCGC	1 cut(s)	170
Cfr10I	RCCGGY	1 cut(s)	439
Cfr13I	GGNCC	1 cut(s)	46
CseI	GACGC	3 cut(s)	185, 221, 445
Csp6I	GTAC	1 cut(s)	104
CviAII	CATG	4 cut(s)	110, 251, 341, 559
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	3 cut(s)	13, 101, 530
DpnII	GATC	3 cut(s)	11, 99, 528
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
Eco130I	CCWWGG	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	46
Eco72I	CACGTG	1 cut(s)	326
Eco91I	GGTNACC	1 cut(s)	275
EcoO65I	GGTNACC	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	4 cut(s)	113, 254, 344, 562
FaiI	YATR	8 cut(s)	111, 252, 342, 351, 445, 447, 560, 574
FatI	CATG	4 cut(s)	109, 250, 340, 558
Fnu4HI	GCNGC	3 cut(s)	194, 364, 378
Fsp4HI	GCNGC	3 cut(s)	194, 364, 378
FspBI	CTAG	1 cut(s)	137
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	3 cut(s)	194, 364, 378
GsuI	CTGGAG	1 cut(s)	451
HaeIII	GGCC	1 cut(s)	225
HapII	CCGG	2 cut(s)	65, 440
HgaI	GACGC	3 cut(s)	185, 221, 445
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	3 cut(s)	177, 213, 437
Hin1II	CATG	4 cut(s)	113, 254, 344, 562
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	2 cut(s)	77, 491
HpaII	CCGG	2 cut(s)	65, 440
HphI	GGTGA	3 cut(s)	54, 142, 287
Hpy166II	GTNNAC	1 cut(s)	517
Hpy188III	TCNNGA	5 cut(s)	118, 137, 383, 468, 532
Hpy8I	GTNNAC	1 cut(s)	517
Hpy99I	CGWCG	2 cut(s)	179, 215
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4IV	ACGT	4 cut(s)	303, 325, 357, 513
HpyCH4V	TGCA	2 cut(s)	371, 479
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 329, 343, 377
HpyF3I	CTNAG	1 cut(s)	285
HpySE526I	ACGT	4 cut(s)	303, 325, 357, 513
Hsp92I	GRCGYC	3 cut(s)	177, 213, 437
Hsp92II	CATG	4 cut(s)	113, 254, 344, 562
HspAI	GCGC	1 cut(s)	168
Kzo9I	GATC	3 cut(s)	11, 99, 528
LmnI	GCTCC	3 cut(s)	94, 299, 567
LpnPI	CCDG	8 cut(s)	29, 78, 182, 246, 273, 453, 481, 486
Lsp1109I	GCAGC	1 cut(s)	364
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	4 cut(s)	303, 325, 357, 513
MaeIII	GTNAC	3 cut(s)	34, 60, 275
MalI	GATC	3 cut(s)	13, 101, 530
MbiI	CCGCTC	1 cut(s)	97
MboI	GATC	3 cut(s)	11, 99, 528
MboII	GAAGA	3 cut(s)	437, 445, 558
MflI	RGATCY	1 cut(s)	11
MluCI	AATT	3 cut(s)	238, 264, 523
MlyI	GAGTC	1 cut(s)	500
MspA1I	CMGCKG	1 cut(s)	193
MspI	CCGG	2 cut(s)	65, 440
MspR9I	CCNGG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	261
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	4 cut(s)	176, 329, 343, 377
NdeII	GATC	3 cut(s)	11, 99, 528
NlaIII	CATG	4 cut(s)	113, 254, 344, 562
NlaIV	GGNNCC	1 cut(s)	569
NmeAIII	GCCGAG	2 cut(s)	186, 446
NmuCI	GTSAC	3 cut(s)	34, 60, 275
NspI	RCATGY	1 cut(s)	562
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	3 cut(s)	195, 365, 379
PleI	GAGTC	1 cut(s)	499
PmaCI	CACGTG	1 cut(s)	326
PmlI	CACGTG	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	499
Ppu21I	YACGTR	1 cut(s)	326
Psp6I	CCWGG	1 cut(s)	259
PspCI	CACGTG	1 cut(s)	326
PspEI	GGTNACC	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	1 cut(s)	569
PspPI	GGNCC	1 cut(s)	46
PstNI	CAGNNNCTG	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	11
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
SatI	GCNGC	3 cut(s)	194, 364, 378
Sau3AI	GATC	3 cut(s)	11, 99, 528
Sau96I	GGNCC	1 cut(s)	46
SchI	GAGTC	1 cut(s)	500
ScrFI	CCNGG	1 cut(s)	261
SfcI	CTRYAG	2 cut(s)	456, 572
SinI	GGWCC	1 cut(s)	46
Sse9I	AATT	3 cut(s)	238, 264, 523
SsiI	CCGC	5 cut(s)	97, 166, 193, 297, 364
SspMI	CTAG	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	259
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	1 cut(s)	34
TaiI	ACGT	4 cut(s)	306, 328, 360, 516
TaqI	TCGA	2 cut(s)	384, 533
TasI	AATT	3 cut(s)	238, 264, 523
TauI	GCSGC	2 cut(s)	196, 366
TfiI	GAWTC	1 cut(s)	77
TscAI	CASTG	3 cut(s)	48, 289, 373
TseFI	GTSAC	3 cut(s)	34, 60, 275
TseI	GCWGC	1 cut(s)	377
Tsp45I	GTSAC	3 cut(s)	34, 60, 275
TspDTI	ATGAA	3 cut(s)	17, 86, 239
TspGWI	ACGGA	1 cut(s)	21
TspRI	CASTG	3 cut(s)	48, 289, 373
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	1 cut(s)	523
XbaI	TCTAGA	1 cut(s)	136
XceI	RCATGY	1 cut(s)	562
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.