Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001141

Physical Location & Seq

Genomic Coordinates Reverse (-)

35199256 .. 35200680

Gene Structure 1425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31901

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGTGGTCGCAGATCATTTTGCTAGCTCAGGACAATGATACTCTCAAAGTTGTATTTGGTTTAACAATGTTCCTACTGATTCTCCAAAACTTTTCCACCAGAATCTTTTGCAAGATAAACCCCCGATCGAACGAGAAAATTACCACCGTGGCACCACTCCGCCTGCCGGAAATGAAAGAATCGGTGGACGCCGTGGAGCGGATCCTAGACTATGACTTCAAGAACAAGAGGCTTCTAGAGGAAGCTCTCATCCACCCCTCCTTCAGAATAAGCGACGCCGTTTCGTATCAGCGGCTCGCGTTCCTCGGCGACACCGTTCTTGACCTCGCTGTAAGTAAAGACCTCTTCCTTGCTTACCCTGTAATTGACCAAGGCGACCTCACTCGGCTACGCTCCGCTAACGTCAGCAACGAGAAGTTCGCACGTGTGGCTGTGAGACATGGGCTTTATAACTACCTTCGAAGCACTGCAACTCATGCTCTCGATAATCAGGTTAGGGAGTTTACTGAAGCTATAAGACGAGAAGAGGAGAAGACGCCTGTATTTGGACGGTCTGTAGAAGCCCCTAAAGTTCTTGCAGATATTGTGGAGTCTGTGGCTGGTGCTATTTATTTTGACTTGAATTTTGATCTGGAACTACTTTGGATGAAATTTAAGCATGTTTTGGAGCCTATAGTTACTCTTGAAGAGTTGCAGCAACAACCTCATCCTGTGACAGAGTTGCAGCAACAAGCTCGTCCTGTGACAGAGTTGCAGCAACAACCTTATCCTGTTCAACAACCTCATCCTGTGACAGAGTTGCATCAACTTTGCCAGAAGCAGGGGAAGAATGTCAGTATCGAGTACGGGAGACGTAAGATGAAGAGTAATATTGATGGGAAGTGTGTTGCCTTGGGTTCGGCTGAACAGAAAGGAAGTGTTAAGGTCAATGCTGCTGAGATGGCTCTGAGGAAGTTGATTTATGATGCGCTGGTTGAAGTTATTGCTGAAATCGATCAGCCATTTTCTGTTAAAAAAGCAAAAGATGAGTTGCATAAGATTTGTGCCGAGAAGAGGTGGCCTCAACCAATTTACACGTATGAATCTTTACTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM Ribonuclease_3 dsrm

Protein Analysis

365

Amino Acids

41.79

Weight (kDa)

6.48

Isoelectric Point (pI)

52.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonucleas_3_3	PF14622	75 - 207	3.7e-18	Ribonuclease-III-like
Ribonuclease_3	PF00636	97 - 206	2.9e-23	Ribonuclease III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20420
fragaria_vesca	FvH4_3g23250
malus_domestica	MD03G1196200.v1.1 MD11G1212500.v1.1
prunus_persica	Prupe.4G219200_v2.0.a1 Prupe.4G219200_v2.0.a1 Prupe.4G219400_v2.0.a1 Prupe.4G219400_v2.0.a1
pyrus_communis	pycom03g14830 pycom11g18750
rosa_chinensis	RchiOBHm_Chr5g0040511 RchiOBHm_Chr5g0040931 RchiOBHm_Chr5g0040941
rosa_laevigata	RLG00000033986 RLG00000034014 RLG00000034016 RLG00000034026
rosa_multiflora	Rmu_co8051550.1_g000001 Rmu_co8392905.1_g000001 Rmu_sc0002475.1_g000019 Rmu_sc0002848.1_g000007 Rmu_sc0006651.1_g000007 Rmu_sc0006651.1_g000008 Rmu_sc0008620.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039580 Rroxscaffold_1G00039750 Rroxscaffold_1G00039760 Rroxscaffold_1G00040130 Rroxscaffold_1G00040850
rosa_rugosa	Rorug02G0350900 Rorug02G0350900 Rorug02G0351000 Rorug05G0185500 Rorug05G0188700 Rorug05G0188900 Rorug05G0188900
rosa_samantha	Rh2AG398700 Rh2BG409100 Rh2CG385500 Rh2CG540800 Rh2DG418900 Rh5AG272400 Rh5AG274300 Rh5AG274400 Rh5AG344200 Rh5BG276400 Rh5BG279300 Rh5BG279400 Rh5CG308900 Rh5CG311400 Rh5CG311600 Rh5DG284900 Rh5DG287500
rosa_wichuraiana	Rw2G032480 Rw5G025510 Rw5G025770 Rw5G025780 Rw5G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	450
AccB1I	GGYRCC	1 cut(s)	151
AccBSI	CCGCTC	1 cut(s)	199
AccII	CGCG	1 cut(s)	299
AciI	CCGC	4 cut(s)	160, 199, 292, 396
AclWI	GGATC	2 cut(s)	196, 209
AcsI	RAATTY	2 cut(s)	622, 650
AcuI	CTGAAG	2 cut(s)	247, 528
AcvI	CACGTG	1 cut(s)	425
AcyI	GRCGYC	3 cut(s)	189, 276, 536
AfaI	GTAC	1 cut(s)	845
AfiI	CCNNNNNNNGG	5 cut(s)	166, 198, 545, 820, 1053
AflIII	ACRYGT	2 cut(s)	424, 1074
AgsI	TTSAA	5 cut(s)	220, 622, 686, 776, 977
AluBI	AGCT	4 cut(s)	26, 245, 512, 734
AluI	AGCT	4 cut(s)	26, 245, 512, 734
Alw26I	GTCTC	2 cut(s)	430, 844
AlwI	GGATC	2 cut(s)	196, 209
AoxI	GGCC	1 cut(s)	1058
ApeKI	GCWGC	4 cut(s)	694, 724, 754, 932
ApoI	RAATTY	2 cut(s)	622, 650
ArsI	GACNNNNNNTTYG	2 cut(s)	608, 640
AspLEI	GCGC	1 cut(s)	970
AsuII	TTCGAA	1 cut(s)	460
AsuNHI	GCTAGC	1 cut(s)	22
BamHI	GGATCC	1 cut(s)	201
BanI	GGYRCC	1 cut(s)	151
BbrPI	CACGTG	1 cut(s)	425
BbsI	GAAGAC	1 cut(s)	539
BbvI	GCAGC	4 cut(s)	706, 736, 766, 919
BccI	CCATC	2 cut(s)	869, 934
BceAI	ACGGC	2 cut(s)	176, 263
BcgI	CGANNNNNNTGC	2 cut(s)	716, 750
BcoDI	GTCTC	2 cut(s)	430, 844
BfaI	CTAG	3 cut(s)	23, 206, 236
BfmI	CTRYAG	2 cut(s)	555, 672
BisI	GCNGC	5 cut(s)	293, 695, 725, 755, 933
BlsI	GCNGC	5 cut(s)	294, 696, 726, 756, 934
BmiI	GGNNCC	3 cut(s)	153, 203, 669
BmsI	GCATC	2 cut(s)	811, 955
BmtI	GCTAGC	1 cut(s)	26
BpiI	GAAGAC	1 cut(s)	539
BplI	GAGNNNNNCTC	2 cut(s)	1045, 1077
Bpu10I	CCTNAGC	1 cut(s)	27
Bpu14I	TTCGAA	1 cut(s)	460
Bsa29I	ATCGAT	1 cut(s)	993
BsaAI	YACGTR	2 cut(s)	425, 1077
BsaHI	GRCGYC	3 cut(s)	189, 276, 536
BsaJI	CCNNGG	5 cut(s)	147, 192, 304, 370, 891
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	5 cut(s)	166, 198, 545, 820, 1053
BseCI	ATCGAT	1 cut(s)	993
BseDI	CCNNGG	5 cut(s)	147, 192, 304, 370, 891
BseGI	GGATG	4 cut(s)	249, 651, 706, 784
BseLI	CCNNNNNNNGG	5 cut(s)	166, 198, 545, 820, 1053
BseMII	CTCAG	3 cut(s)	41, 927, 938
BseRI	GAGGAG	1 cut(s)	542
BseXI	GCAGC	4 cut(s)	706, 736, 766, 919
Bsh1236I	CGCG	1 cut(s)	299
Bsh1285I	CGRYCG	1 cut(s)	128
BshFI	GGCC	1 cut(s)	1060
BshNI	GGYRCC	1 cut(s)	151
BshVI	ATCGAT	1 cut(s)	993
BsiEI	CGRYCG	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	167
BslI	CCNNNNNNNGG	5 cut(s)	166, 198, 545, 820, 1053
BsmAI	GTCTC	2 cut(s)	430, 844
BsmBI	CGTCTC	1 cut(s)	844
BsnI	GGCC	1 cut(s)	1060
Bsp119I	TTCGAA	1 cut(s)	460
Bsp143I	GATC	5 cut(s)	12, 125, 201, 628, 994
BspACI	CCGC	4 cut(s)	160, 199, 292, 396
BspANI	GGCC	1 cut(s)	1060
BspCNI	CTCAG	3 cut(s)	40, 928, 939
BspDI	ATCGAT	1 cut(s)	993
BspFNI	CGCG	1 cut(s)	299
BspLI	GGNNCC	3 cut(s)	153, 203, 669
BspOI	GCTAGC	1 cut(s)	26
BspPI	GGATC	2 cut(s)	196, 209
BspT104I	TTCGAA	1 cut(s)	460
BspT107I	GGYRCC	1 cut(s)	151
BsrBI	CCGCTC	1 cut(s)	199
BssECI	CCNNGG	5 cut(s)	147, 192, 304, 370, 891
BssMI	GATC	5 cut(s)	12, 125, 201, 628, 994
BssNI	GRCGYC	3 cut(s)	189, 276, 536
BssT1I	CCWWGG	2 cut(s)	370, 891
Bst4CI	ACNGT	3 cut(s)	148, 316, 552
Bst6I	CTCTTC	5 cut(s)	350, 519, 681, 857, 1046
BstACI	GRCGYC	3 cut(s)	189, 276, 536
BstAPI	GCANNNNNTGC	1 cut(s)	476
BstBAI	YACGTR	2 cut(s)	425, 1077
BstBI	TTCGAA	1 cut(s)	460
BstC8I	GCNNGC	3 cut(s)	24, 164, 297
BstDEI	CTNAG	3 cut(s)	27, 936, 947
BstDSI	CCRYGG	2 cut(s)	147, 192
BstF5I	GGATG	4 cut(s)	249, 651, 706, 784
BstFNI	CGCG	1 cut(s)	299
BstHHI	GCGC	1 cut(s)	970
BstKTI	GATC	5 cut(s)	15, 128, 204, 631, 997
BstMAI	GTCTC	2 cut(s)	430, 844
BstMBI	GATC	5 cut(s)	12, 125, 201, 628, 994
BstMCI	CGRYCG	1 cut(s)	128
BstMWI	GCNNNNNNNGC	3 cut(s)	428, 476, 941
BstNSI	RCATGY	1 cut(s)	662
BstSFI	CTRYAG	2 cut(s)	555, 672
BstUI	CGCG	1 cut(s)	299
BstV1I	GCAGC	4 cut(s)	706, 736, 766, 919
BstV2I	GAAGAC	1 cut(s)	539
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
Bsu15I	ATCGAT	1 cut(s)	993
BsuRI	GGCC	1 cut(s)	1060
BsuTUI	ATCGAT	1 cut(s)	993
BtgI	CCRYGG	2 cut(s)	147, 192
BtsCI	GGATG	4 cut(s)	249, 651, 706, 784
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	1 cut(s)	465
Cac8I	GCNNGC	3 cut(s)	24, 164, 297
CfoI	GCGC	1 cut(s)	970
ClaI	ATCGAT	1 cut(s)	993
CseI	GACGC	3 cut(s)	197, 284, 544
Csp6I	GTAC	1 cut(s)	844
CviAII	CATG	3 cut(s)	440, 476, 659
CviQI	GTAC	1 cut(s)	844
DdeI	CTNAG	3 cut(s)	27, 936, 947
DpnI	GATC	5 cut(s)	14, 127, 203, 630, 996
DpnII	GATC	5 cut(s)	12, 125, 201, 628, 994
Eam1104I	CTCTTC	5 cut(s)	350, 519, 681, 857, 1046
EarI	CTCTTC	5 cut(s)	350, 519, 681, 857, 1046
EciI	GGCGGA	1 cut(s)	149
Eco130I	CCWWGG	2 cut(s)	370, 891
Eco57I	CTGAAG	2 cut(s)	247, 528
Eco72I	CACGTG	1 cut(s)	425
EcoT14I	CCWWGG	2 cut(s)	370, 891
ErhI	CCWWGG	2 cut(s)	370, 891
Esp3I	CGTCTC	1 cut(s)	844
FaeI	CATG	3 cut(s)	443, 479, 662
FatI	CATG	3 cut(s)	439, 475, 658
Fnu4HI	GCNGC	5 cut(s)	293, 695, 725, 755, 933
FokI	GGATG	4 cut(s)	236, 658, 693, 771
Fsp4HI	GCNGC	5 cut(s)	293, 695, 725, 755, 933
FspBI	CTAG	3 cut(s)	23, 206, 236
GlaI	GCGC	1 cut(s)	969
GluI	GCNGC	5 cut(s)	293, 695, 725, 755, 933
HaeIII	GGCC	1 cut(s)	1060
HapII	CCGG	1 cut(s)	167
HgaI	GACGC	3 cut(s)	197, 284, 544
HhaI	GCGC	1 cut(s)	970
Hin1I	GRCGYC	3 cut(s)	189, 276, 536
Hin1II	CATG	3 cut(s)	443, 479, 662
Hin6I	GCGC	1 cut(s)	968
HinP1I	GCGC	1 cut(s)	968
HinfI	GANTC	5 cut(s)	79, 102, 179, 590, 1082
HpaII	CCGG	1 cut(s)	167
Hpy166II	GTNNAC	2 cut(s)	187, 504
Hpy188I	TCNGA	2 cut(s)	266, 948
Hpy188III	TCNNGA	7 cut(s)	29, 220, 236, 320, 482, 632, 683
Hpy8I	GTNNAC	2 cut(s)	187, 504
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	2 cut(s)	271, 467
HpyCH4III	ACNGT	3 cut(s)	148, 316, 552
HpyCH4IV	ACGT	4 cut(s)	402, 424, 853, 1076
HpyCH4V	TGCA	8 cut(s)	111, 470, 578, 694, 724, 754, 802, 1033
HpyF10VI	GCNNNNNNNGC	3 cut(s)	428, 476, 941
HpyF3I	CTNAG	3 cut(s)	27, 936, 947
HpySE526I	ACGT	4 cut(s)	402, 424, 853, 1076
Hsp92I	GRCGYC	3 cut(s)	189, 276, 536
Hsp92II	CATG	3 cut(s)	443, 479, 662
HspAI	GCGC	1 cut(s)	968
Kzo9I	GATC	5 cut(s)	12, 125, 201, 628, 994
LmnI	GCTCC	3 cut(s)	196, 398, 667
Lsp1109I	GCAGC	4 cut(s)	706, 736, 766, 919
LweI	GCATC	2 cut(s)	811, 955
MaeI	CTAG	3 cut(s)	23, 206, 236
MaeII	ACGT	4 cut(s)	402, 424, 853, 1076
MaeIII	GTNAC	4 cut(s)	676, 712, 742, 790
MalI	GATC	5 cut(s)	14, 127, 203, 630, 996
MbiI	CCGCTC	1 cut(s)	199
MboI	GATC	5 cut(s)	12, 125, 201, 628, 994
MboII	GAAGA	7 cut(s)	337, 536, 544, 698, 838, 874, 1063
MflI	RGATCY	1 cut(s)	201
MluCI	AATT	6 cut(s)	138, 363, 622, 650, 1068, 1093
MlyI	GAGTC	1 cut(s)	599
MseI	TTAA	5 cut(s)	62, 654, 921, 1011, 1092
MspA1I	CMGCKG	1 cut(s)	292
MspI	CCGG	1 cut(s)	167
MvnI	CGCG	1 cut(s)	299
MwoI	GCNNNNNNNGC	3 cut(s)	428, 476, 941
NdeII	GATC	5 cut(s)	12, 125, 201, 628, 994
NheI	GCTAGC	1 cut(s)	22
NlaIII	CATG	3 cut(s)	443, 479, 662
NlaIV	GGNNCC	3 cut(s)	153, 203, 669
NmeAIII	GCCGAG	3 cut(s)	285, 364, 1072
NmuCI	GTSAC	3 cut(s)	712, 742, 790
NspI	RCATGY	1 cut(s)	662
NspV	TTCGAA	1 cut(s)	460
PcsI	WCGNNNNNNNCGW	2 cut(s)	312, 408
PfeI	GAWTC	4 cut(s)	79, 102, 179, 1082
PkrI	GCNGC	5 cut(s)	294, 696, 726, 756, 934
Ple19I	CGATCG	1 cut(s)	128
PleI	GAGTC	1 cut(s)	598
PmaCI	CACGTG	1 cut(s)	425
PmlI	CACGTG	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	598
Ppu21I	YACGTR	2 cut(s)	425, 1077
PsiI	TTATAA	1 cut(s)	450
PspCI	CACGTG	1 cut(s)	425
PspN4I	GGNNCC	3 cut(s)	153, 203, 669
PsuI	RGATCY	1 cut(s)	201
PvuI	CGATCG	1 cut(s)	128
RsaI	GTAC	1 cut(s)	845
RsaNI	GTAC	1 cut(s)	844
SaqAI	TTAA	5 cut(s)	62, 654, 921, 1011, 1092
SatI	GCNGC	5 cut(s)	293, 695, 725, 755, 933
Sau3AI	GATC	5 cut(s)	12, 125, 201, 628, 994
SchI	GAGTC	1 cut(s)	599
SfaNI	GCATC	2 cut(s)	811, 955
SfcI	CTRYAG	2 cut(s)	555, 672
SfuI	TTCGAA	1 cut(s)	460
Sse9I	AATT	6 cut(s)	138, 363, 622, 650, 1068, 1093
SsiI	CCGC	4 cut(s)	160, 199, 292, 396
SspI	AATATT	1 cut(s)	871
SspMI	CTAG	3 cut(s)	23, 206, 236
StyI	CCWWGG	2 cut(s)	370, 891
TaaI	ACNGT	3 cut(s)	148, 316, 552
TaiI	ACGT	4 cut(s)	405, 427, 856, 1079
TaqI	TCGA	5 cut(s)	128, 460, 483, 840, 993
TasI	AATT	6 cut(s)	138, 363, 622, 650, 1068, 1093
TauI	GCSGC	1 cut(s)	295
TfiI	GAWTC	4 cut(s)	79, 102, 179, 1082
Tru1I	TTAA	5 cut(s)	62, 654, 921, 1011, 1092
Tru9I	TTAA	5 cut(s)	62, 654, 921, 1011, 1092
TscAI	CASTG	1 cut(s)	472
TseFI	GTSAC	3 cut(s)	712, 742, 790
TseI	GCWGC	4 cut(s)	694, 724, 754, 932
Tsp45I	GTSAC	3 cut(s)	712, 742, 790
TspDTI	ATGAA	4 cut(s)	188, 662, 875, 1095
TspRI	CASTG	1 cut(s)	472
XapI	RAATTY	2 cut(s)	622, 650
XbaI	TCTAGA	1 cut(s)	235
XceI	RCATGY	1 cut(s)	662
XspI	CTAG	3 cut(s)	23, 206, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.