Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8051550.1

Orthogroup ID

OG0001141

Physical Location & Seq

Genomic Coordinates Forward (+)

312 .. 561

Gene Structure 250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8051550.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 250 bp

atgaacggaggatcttacgagaaaatccccaccgtgacaccactcgacctccacacgccgtcaccggaaatgaaagaatcggtggaagccgtggagcggatcgtacaacatgacttcaagaacaacaagaagcttctagaggaagctctcacccacccctcattccgcgcaagcgacgccgtttcgtatcagcggctggcgttcctcggcgacgccgttcttggcctcgctgtaagtaattacctctttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM Ribonuclease_3 dsrm

Protein Analysis

83

Amino Acids

9.23

Weight (kDa)

5.48

Isoelectric Point (pI)

21.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20420
fragaria_vesca	FvH4_3g23250
malus_domestica	MD03G1196200.v1.1 MD11G1212500.v1.1
prunus_persica	Prupe.4G219200_v2.0.a1 Prupe.4G219200_v2.0.a1 Prupe.4G219400_v2.0.a1 Prupe.4G219400_v2.0.a1
pyrus_communis	pycom03g14830 pycom11g18750
rosa_chinensis	RchiOBHm_Chr5g0040511 RchiOBHm_Chr5g0040931 RchiOBHm_Chr5g0040941
rosa_laevigata	RLG00000033986 RLG00000034014 RLG00000034016 RLG00000034026
rosa_multiflora	Rmu_co8051550.1_g000001 Rmu_co8392905.1_g000001 Rmu_sc0002475.1_g000019 Rmu_sc0002848.1_g000007 Rmu_sc0006651.1_g000007 Rmu_sc0006651.1_g000008 Rmu_sc0008620.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039580 Rroxscaffold_1G00039750 Rroxscaffold_1G00039760 Rroxscaffold_1G00040130 Rroxscaffold_1G00040850
rosa_rugosa	Rorug02G0350900 Rorug02G0350900 Rorug02G0351000 Rorug05G0185500 Rorug05G0188700 Rorug05G0188900 Rorug05G0188900
rosa_samantha	Rh2AG398700 Rh2BG409100 Rh2CG385500 Rh2CG540800 Rh2DG418900 Rh5AG272400 Rh5AG274300 Rh5AG274400 Rh5AG344200 Rh5BG276400 Rh5BG279300 Rh5BG279400 Rh5CG308900 Rh5CG311400 Rh5CG311600 Rh5DG284900 Rh5DG287500
rosa_wichuraiana	Rw2G032480 Rw5G025510 Rw5G025770 Rw5G025780 Rw5G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	97
AccII	CGCG	1 cut(s)	168
AciI	CCGC	3 cut(s)	97, 166, 193
AclWI	GGATC	2 cut(s)	19, 107
AcyI	GRCGYC	2 cut(s)	177, 213
AfaI	GTAC	1 cut(s)	105
AfiI	CCNNNNNNNGG	1 cut(s)	96
AgsI	TTSAA	1 cut(s)	118
AluBI	AGCT	2 cut(s)	133, 146
AluI	AGCT	2 cut(s)	133, 146
AlwI	GGATC	2 cut(s)	19, 107
AlwNI	CAGNNNCTG	1 cut(s)	196
AoxI	GGCC	1 cut(s)	223
AspLEI	GCGC	1 cut(s)	170
AsuHPI	GGTGA	2 cut(s)	54, 142
BceAI	ACGGC	4 cut(s)	43, 74, 164, 200
BfaI	CTAG	1 cut(s)	137
BisI	GCNGC	1 cut(s)	194
BlsI	GCNGC	1 cut(s)	195
BsaHI	GRCGYC	2 cut(s)	177, 213
BsaJI	CCNNGG	2 cut(s)	90, 205
BsaWI	WCCGGW	1 cut(s)	64
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
BseDI	CCNNGG	2 cut(s)	90, 205
BseLI	CCNNNNNNNGG	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	1 cut(s)	225
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	96
BsnI	GGCC	1 cut(s)	225
Bsp143I	GATC	2 cut(s)	11, 99
BspACI	CCGC	3 cut(s)	97, 166, 193
BspANI	GGCC	1 cut(s)	225
BspFNI	CGCG	1 cut(s)	168
BspPI	GGATC	2 cut(s)	19, 107
BsrBI	CCGCTC	1 cut(s)	97
BssECI	CCNNGG	2 cut(s)	90, 205
BssMI	GATC	2 cut(s)	11, 99
BssNI	GRCGYC	2 cut(s)	177, 213
Bst4CI	ACNGT	1 cut(s)	34
BstACI	GRCGYC	2 cut(s)	177, 213
BstC8I	GCNNGC	2 cut(s)	172, 198
BstDSI	CCRYGG	1 cut(s)	90
BstFNI	CGCG	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	2 cut(s)	14, 102
BstMBI	GATC	2 cut(s)	11, 99
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstUI	CGCG	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	11
BstYI	RGATCY	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	225
BtgI	CCRYGG	1 cut(s)	90
Cac8I	GCNNGC	2 cut(s)	172, 198
CaiI	CAGNNNCTG	1 cut(s)	196
CfoI	GCGC	1 cut(s)	170
CseI	GACGC	2 cut(s)	185, 221
Csp6I	GTAC	1 cut(s)	104
CviAII	CATG	1 cut(s)	110
CviJI	RGCY	5 cut(s)	89, 133, 146, 196, 225
CviKI_1	RGCY	5 cut(s)	89, 133, 146, 196, 225
CviQI	GTAC	1 cut(s)	104
DpnI	GATC	2 cut(s)	13, 101
DpnII	GATC	2 cut(s)	11, 99
FaeI	CATG	1 cut(s)	113
FaiI	YATR	1 cut(s)	111
FatI	CATG	1 cut(s)	109
Fnu4HI	GCNGC	1 cut(s)	194
Fsp4HI	GCNGC	1 cut(s)	194
FspBI	CTAG	1 cut(s)	137
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	1 cut(s)	194
HaeIII	GGCC	1 cut(s)	225
HapII	CCGG	1 cut(s)	65
HgaI	GACGC	2 cut(s)	185, 221
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	2 cut(s)	177, 213
Hin1II	CATG	1 cut(s)	113
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	1 cut(s)	77
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	2 cut(s)	54, 142
Hpy188III	TCNNGA	2 cut(s)	118, 137
Hpy99I	CGWCG	2 cut(s)	179, 215
HpyCH4III	ACNGT	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
Hsp92I	GRCGYC	2 cut(s)	177, 213
Hsp92II	CATG	1 cut(s)	113
HspAI	GCGC	1 cut(s)	168
Kzo9I	GATC	2 cut(s)	11, 99
LmnI	GCTCC	1 cut(s)	94
LpnPI	CCDG	2 cut(s)	78, 182
MaeI	CTAG	1 cut(s)	137
MaeIII	GTNAC	2 cut(s)	34, 60
MalI	GATC	2 cut(s)	13, 101
MbiI	CCGCTC	1 cut(s)	97
MboI	GATC	2 cut(s)	11, 99
MflI	RGATCY	1 cut(s)	11
MluCI	AATT	1 cut(s)	238
MnlI	CCTC	5 cut(s)	59, 133, 169, 215, 236
MspA1I	CMGCKG	1 cut(s)	193
MspI	CCGG	1 cut(s)	65
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeII	GATC	2 cut(s)	11, 99
NlaIII	CATG	1 cut(s)	113
NmeAIII	GCCGAG	1 cut(s)	186
NmuCI	GTSAC	2 cut(s)	34, 60
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	1 cut(s)	195
PstNI	CAGNNNCTG	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	11
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
SatI	GCNGC	1 cut(s)	194
Sau3AI	GATC	2 cut(s)	11, 99
SetI	ASST	4 cut(s)	51, 135, 148, 246
Sse9I	AATT	1 cut(s)	238
SsiI	CCGC	3 cut(s)	97, 166, 193
SspMI	CTAG	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	34
TaqI	TCGA	1 cut(s)	45
TasI	AATT	1 cut(s)	238
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	1 cut(s)	77
TseFI	GTSAC	2 cut(s)	34, 60
Tsp45I	GTSAC	2 cut(s)	34, 60
TspDTI	ATGAA	2 cut(s)	17, 86
TspGWI	ACGGA	1 cut(s)	21
XbaI	TCTAGA	1 cut(s)	136
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.