Rh5AG274400

Ribonuclease 3-like protein 2

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
36766581 .. 36769981
3401 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG274400.1

Sequence Viewer

Length: 1059 bp
ATGTCTTTCGTTTTCCTTTTGTTGTTGAAAACCTCATCCACCAACAACGTTTGCAAAATGAACGGAGGATCTTACGAGAAAATCCCCACCGTGACACCAGTCGATCTCCACACGCCGTCACCGGAAATGAAAGAATCGGTGGAAGCCGTGGAGCGGATCGTACAATATGACTTCAAGAACAACAAGAAGTTTCTAGAGGAAGCTCTCACCCACCCCTCATTCCGCGCAAGCGACGCCGTTTCGTATCAGCGGCTGGCGTTCCTAGGCGACGCCGTTCTTGGCCTCGCTGTAAGTAATTACCTCTTTCATGCTTACCCTGGAATTGACCAAGGTAGCCTCACTGAGCTACGCTCCGCTAACGTCAGCAAAGAGAGGTTCGCACGTGTCGCTGTGCGACATGGGCTTTATACCTACGTTCGCCGCACTGCAACTGCTGCTCTCGATGATCAGGTTAGGGAGTTTACTGAAGTTGTAAGCCGAGAAGAGGAGAAGACGCCGGTATATGGAGGTTCTGTAGAAGCCTCCAGAGTTCTTGCAGAGATTGTGGAGTCTCTGGCTGGTGCTATTTACTCTGACTTGAATTCTGATCTCGAAAAACTTTGGAAGATTTTTAGGCATGTTTTGGAGCCTATAGTTACTATTGAAAAGTTGCAGCAACAACCTCACCCCGTCACAAAGTTGCATCAGTTTTGTCAGAAGCACGGGAAGCTTGCCAAGATCGAGTGCGAGAGAGATGAGACCAAGAGTACTGCGAATGTGTATGTTGATGGCATGTTTGTTGCCTCGGGTTCTTCTGAACAGAAAAAAATTGCTAAGGTCAGTGCTGCTGAGATGGCTCTGTGTAACTTGATGCAATCGATGTGCACGAATGATGCGTCGGTTGAAGATGCTGCTGGAATTGATGGGTCATTTCCTGTTGAAAGAGCAAAAAATGAGTTGCATAATCTTTGTGCCAAGAAGAAGTGGCCTAAACCAATTTACACGTATGACTCTTTACTTGTGAATGAATTTGATTTTATGATATGCTTGCTACTTTCTTTTGTTGGCGCCTCCTATTAG

Protein Analysis

352

Amino Acids

39.31

Weight (kDa)

6.04

Isoelectric Point (pI)

34.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribonucleas_3_3 PF14622 61 - 192 4.5e-19 Ribonuclease-III-like
Ribonuclease_3 PF00636 83 - 192 3.8e-21 Ribonuclease III domain
dsrm PF00035 223 - 283 9.7e-11 Double-stranded RNA binding motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1046
AccBSI CCGCTC 1 cut(s) 154
AccII CGCG 1 cut(s) 225
AciI CCGC 5 cut(s) 154, 223, 250, 354, 421
AclI AACGTT 1 cut(s) 48
AclWI GGATC 2 cut(s) 76, 164
AcsI RAATTY 2 cut(s) 580, 1007
AcuI CTGAAG 1 cut(s) 486
AcvI CACGTG 1 cut(s) 383
AcyI GRCGYC 4 cut(s) 234, 270, 494, 1047
AfaI GTAC 2 cut(s) 162, 748
AfiI CCNNNNNNNGG 3 cut(s) 153, 484, 503
AflIII ACRYGT 2 cut(s) 382, 981
AgsI TTSAA 6 cut(s) 28, 175, 580, 644, 884, 920
AjnI CCWGG 1 cut(s) 316
AluBI AGCT 3 cut(s) 203, 346, 709
AluI AGCT 3 cut(s) 203, 346, 709
Alw21I GWGCWC 1 cut(s) 866
Alw26I GTCTC 2 cut(s) 555, 731
Alw44I GTGCAC 1 cut(s) 862
AlwI GGATC 2 cut(s) 76, 164
AlwNI CAGNNNCTG 1 cut(s) 253
Ama87I CYCGRG 1 cut(s) 784
AoxI GGCC 2 cut(s) 280, 965
ApaLI GTGCAC 1 cut(s) 862
ApeKI GCWGC 4 cut(s) 434, 652, 824, 890
ApoI RAATTY 2 cut(s) 580, 1007
ArsI GACNNNNNNTTYG 2 cut(s) 860, 892
AspA2I CCTAGG 1 cut(s) 262
AspLEI GCGC 2 cut(s) 227, 1049
AsuHPI GGTGA 3 cut(s) 111, 199, 656
AvaI CYCGRG 1 cut(s) 784
AvrII CCTAGG 1 cut(s) 262
BaeGI GKGCMC 1 cut(s) 866
BanI GGYRCC 1 cut(s) 1046
BbrPI CACGTG 1 cut(s) 383
BbsI GAAGAC 1 cut(s) 497
Bbv12I GWGCWC 1 cut(s) 866
BbvI GCAGC 4 cut(s) 421, 664, 811, 877
BccI CCATC 3 cut(s) 761, 826, 896
BceAI ACGGC 4 cut(s) 100, 131, 221, 257
BciT130I CCWGG 1 cut(s) 318
BclI TGATCA 1 cut(s) 445
BcoDI GTCTC 2 cut(s) 555, 731
BfaI CTAG 2 cut(s) 194, 263
BfmI CTRYAG 2 cut(s) 513, 630
BfoI RGCGCY 1 cut(s) 1050
BisI GCNGC 6 cut(s) 251, 421, 435, 653, 825, 891
BlnI CCTAGG 1 cut(s) 262
BlsI GCNGC 6 cut(s) 252, 422, 436, 654, 826, 892
BmcAI AGTACT 1 cut(s) 748
Bme1390I CCNGG 1 cut(s) 318
BmeT110I CYCGRG 1 cut(s) 784
BmiI GGNNCC 2 cut(s) 627, 1048
BmrFI CCNGG 1 cut(s) 318
BmsI GCATC 4 cut(s) 691, 840, 862, 877
BoxI GACNNNNGTC 1 cut(s) 98
BpiI GAAGAC 1 cut(s) 497
BplI GAGNNNNNCTC 2 cut(s) 335, 367
BpmI CTGGAG 1 cut(s) 508
Bpu10I CCTNAGC 1 cut(s) 813
Bsa29I ATCGAT 1 cut(s) 857
BsaAI YACGTR 2 cut(s) 383, 984
BsaHI GRCGYC 4 cut(s) 234, 270, 494, 1047
BsaI GGTCTC 1 cut(s) 731
BsaJI CCNNGG 5 cut(s) 147, 262, 316, 328, 783
BsaWI WCCGGW 1 cut(s) 121
BsaXI ACNNNNNCTCC 2 cut(s) 498, 528
Bsc4I CCNNNNNNNGG 3 cut(s) 153, 484, 503
Bse118I RCCGGY 1 cut(s) 496
Bse1I ACTGG 1 cut(s) 98
BseBI CCWGG 1 cut(s) 318
BseCI ATCGAT 1 cut(s) 857
BseDI CCNNGG 5 cut(s) 147, 262, 316, 328, 783
BseGI GGATG 1 cut(s) 35
BseLI CCNNNNNNNGG 3 cut(s) 153, 484, 503
BseMII CTCAG 2 cut(s) 333, 819
BseNI ACTGG 1 cut(s) 98
BseRI GAGGAG 1 cut(s) 500
BseSI GKGCMC 1 cut(s) 866
BseXI GCAGC 4 cut(s) 421, 664, 811, 877
Bsh1236I CGCG 1 cut(s) 225
BshFI GGCC 2 cut(s) 282, 967
BshNI GGYRCC 1 cut(s) 1046
BshVI ATCGAT 1 cut(s) 857
BsiHKAI GWGCWC 1 cut(s) 866
BsiHKCI CYCGRG 1 cut(s) 784
BsiSI CCGG 2 cut(s) 122, 497
BslI CCNNNNNNNGG 3 cut(s) 153, 484, 503
BsmAI GTCTC 2 cut(s) 555, 731
BsnI GGCC 2 cut(s) 282, 967
Bso31I GGTCTC 1 cut(s) 731
BsoBI CYCGRG 1 cut(s) 784
Bsp1286I GDGCHC 1 cut(s) 866
Bsp143I GATC 6 cut(s) 68, 103, 156, 445, 586, 717
BspACI CCGC 5 cut(s) 154, 223, 250, 354, 421
BspANI GGCC 2 cut(s) 282, 967
BspCNI CTCAG 2 cut(s) 334, 820
BspDI ATCGAT 1 cut(s) 857
BspFNI CGCG 1 cut(s) 225
BspLI GGNNCC 2 cut(s) 627, 1048
BspPI GGATC 2 cut(s) 76, 164
BspT107I GGYRCC 1 cut(s) 1046
BspTNI GGTCTC 1 cut(s) 731
BsrBI CCGCTC 1 cut(s) 154
BsrFI RCCGGY 1 cut(s) 496
BsrI ACTGG 1 cut(s) 98
BssAI RCCGGY 1 cut(s) 496
BssECI CCNNGG 5 cut(s) 147, 262, 316, 328, 783
BssMI GATC 6 cut(s) 68, 103, 156, 445, 586, 717
BssNI GRCGYC 4 cut(s) 234, 270, 494, 1047
BssT1I CCWWGG 2 cut(s) 262, 328
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 1 cut(s) 91
Bst6I CTCTTC 1 cut(s) 477
BstACI GRCGYC 4 cut(s) 234, 270, 494, 1047
BstAPI GCANNNNNTGC 1 cut(s) 434
BstBAI YACGTR 2 cut(s) 383, 984
BstC8I GCNNGC 4 cut(s) 229, 255, 711, 1028
BstDEI CTNAG 3 cut(s) 342, 813, 828
BstDSI CCRYGG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 35
BstFNI CGCG 1 cut(s) 225
BstH2I RGCGCY 1 cut(s) 1050
BstHHI GCGC 2 cut(s) 227, 1049
BstKTI GATC 6 cut(s) 71, 106, 159, 448, 589, 720
BstMAI GTCTC 2 cut(s) 555, 731
BstMBI GATC 6 cut(s) 68, 103, 156, 445, 586, 717
BstMWI GCNNNNNNNGC 6 cut(s) 233, 386, 400, 434, 706, 833
BstNI CCWGG 1 cut(s) 318
BstNSI RCATGY 2 cut(s) 620, 775
BstPAI GACNNNNGTC 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 316
BstSFI CTRYAG 2 cut(s) 513, 630
BstSLI GKGCMC 1 cut(s) 866
BstUI CGCG 1 cut(s) 225
BstV1I GCAGC 4 cut(s) 421, 664, 811, 877
BstV2I GAAGAC 1 cut(s) 497
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
Bsu15I ATCGAT 1 cut(s) 857
BsuRI GGCC 2 cut(s) 282, 967
BsuTUI ATCGAT 1 cut(s) 857
BtgI CCRYGG 1 cut(s) 147
BtsCI GGATG 1 cut(s) 35
BtsI GCAGTG 1 cut(s) 423
BtsIMutI CAGTG 3 cut(s) 339, 423, 826
Cac8I GCNNGC 4 cut(s) 229, 255, 711, 1028
CaiI CAGNNNCTG 1 cut(s) 253
CfoI GCGC 2 cut(s) 227, 1049
Cfr10I RCCGGY 1 cut(s) 496
ClaI ATCGAT 1 cut(s) 857
CseI GACGC 4 cut(s) 242, 278, 502, 864
Csp6I GTAC 2 cut(s) 161, 747
CviAII CATG 4 cut(s) 308, 398, 617, 772
CviQI GTAC 2 cut(s) 161, 747
DdeI CTNAG 3 cut(s) 342, 813, 828
DinI GGCGCC 1 cut(s) 1048
DpnI GATC 6 cut(s) 70, 105, 158, 447, 588, 719
DpnII GATC 6 cut(s) 68, 103, 156, 445, 586, 717
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
Eco130I CCWWGG 2 cut(s) 262, 328
Eco31I GGTCTC 1 cut(s) 731
Eco57I CTGAAG 1 cut(s) 486
Eco72I CACGTG 1 cut(s) 383
Eco88I CYCGRG 1 cut(s) 784
EcoRI GAATTC 1 cut(s) 580
EcoRII CCWGG 1 cut(s) 316
EcoT14I CCWWGG 2 cut(s) 262, 328
EgeI GGCGCC 1 cut(s) 1048
EheI GGCGCC 1 cut(s) 1048
ErhI CCWWGG 2 cut(s) 262, 328
FaeI CATG 4 cut(s) 311, 401, 620, 775
FatI CATG 4 cut(s) 307, 397, 616, 771
FbaI TGATCA 1 cut(s) 445
Fnu4HI GCNGC 6 cut(s) 251, 421, 435, 653, 825, 891
FokI GGATG 1 cut(s) 22
Fsp4HI GCNGC 6 cut(s) 251, 421, 435, 653, 825, 891
FspBI CTAG 2 cut(s) 194, 263
GlaI GCGC 2 cut(s) 226, 1048
GluI GCNGC 6 cut(s) 251, 421, 435, 653, 825, 891
GsuI CTGGAG 1 cut(s) 508
HaeII RGCGCY 1 cut(s) 1050
HaeIII GGCC 2 cut(s) 282, 967
HapII CCGG 2 cut(s) 122, 497
HgaI GACGC 4 cut(s) 242, 278, 502, 864
HhaI GCGC 2 cut(s) 227, 1049
Hin1I GRCGYC 4 cut(s) 234, 270, 494, 1047
Hin1II CATG 4 cut(s) 311, 401, 620, 775
Hin6I GCGC 2 cut(s) 225, 1047
HinP1I GCGC 2 cut(s) 225, 1047
HindIII AAGCTT 1 cut(s) 707
HinfI GANTC 3 cut(s) 134, 548, 989
HpaII CCGG 2 cut(s) 122, 497
HphI GGTGA 3 cut(s) 111, 199, 656
Hpy166II GTNNAC 2 cut(s) 462, 864
Hpy188I TCNGA 4 cut(s) 574, 586, 696, 796
Hpy188III TCNNGA 5 cut(s) 175, 194, 440, 525, 590
Hpy8I GTNNAC 2 cut(s) 462, 864
Hpy99I CGWCG 3 cut(s) 236, 272, 880
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4IV ACGT 5 cut(s) 48, 360, 382, 414, 983
HpyCH4V TGCA 8 cut(s) 54, 428, 536, 652, 682, 853, 864, 940
HpyF10VI GCNNNNNNNGC 6 cut(s) 233, 386, 400, 434, 706, 833
HpyF3I CTNAG 3 cut(s) 342, 813, 828
HpySE526I ACGT 5 cut(s) 48, 360, 382, 414, 983
Hsp92I GRCGYC 4 cut(s) 234, 270, 494, 1047
Hsp92II CATG 4 cut(s) 311, 401, 620, 775
HspAI GCGC 2 cut(s) 225, 1047
KasI GGCGCC 1 cut(s) 1046
Ksp22I TGATCA 1 cut(s) 445
Kzo9I GATC 6 cut(s) 68, 103, 156, 445, 586, 717
LmnI GCTCC 3 cut(s) 151, 356, 625
Lsp1109I GCAGC 4 cut(s) 421, 664, 811, 877
LweI GCATC 4 cut(s) 691, 840, 862, 877
MaeI CTAG 2 cut(s) 194, 263
MaeII ACGT 5 cut(s) 48, 360, 382, 414, 983
MaeIII GTNAC 5 cut(s) 91, 117, 634, 670, 842
MalI GATC 6 cut(s) 70, 105, 158, 447, 588, 719
MbiI CCGCTC 1 cut(s) 154
MboI GATC 6 cut(s) 68, 103, 156, 445, 586, 717
MboII GAAGA 6 cut(s) 494, 502, 616, 783, 896, 970
MflI RGATCY 1 cut(s) 68
MhlI GDGCHC 1 cut(s) 866
MluCI AATT 7 cut(s) 295, 321, 580, 807, 897, 975, 1007
Mly113I GGCGCC 1 cut(s) 1047
MlyI GAGTC 2 cut(s) 557, 983
MspA1I CMGCKG 1 cut(s) 250
MspI CCGG 2 cut(s) 122, 497
MspR9I CCNGG 1 cut(s) 318
MvaI CCWGG 1 cut(s) 318
MvnI CGCG 1 cut(s) 225
MwoI GCNNNNNNNGC 6 cut(s) 233, 386, 400, 434, 706, 833
NarI GGCGCC 1 cut(s) 1047
NdeII GATC 6 cut(s) 68, 103, 156, 445, 586, 717
NlaIII CATG 4 cut(s) 311, 401, 620, 775
NlaIV GGNNCC 2 cut(s) 627, 1048
NmeAIII GCCGAG 1 cut(s) 503
NmuCI GTSAC 3 cut(s) 91, 117, 670
NspI RCATGY 2 cut(s) 620, 775
PcsI WCGNNNNNNNCGW 2 cut(s) 863, 872
PfeI GAWTC 1 cut(s) 134
PkrI GCNGC 6 cut(s) 252, 422, 436, 654, 826, 892
PleI GAGTC 2 cut(s) 556, 983
PluTI GGCGCC 1 cut(s) 1050
PmaCI CACGTG 1 cut(s) 383
PmlI CACGTG 1 cut(s) 383
PpsI GAGTC 2 cut(s) 556, 983
Ppu21I YACGTR 2 cut(s) 383, 984
PshAI GACNNNNGTC 1 cut(s) 98
Psp1406I AACGTT 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 316
PspCI CACGTG 1 cut(s) 383
PspGI CCWGG 1 cut(s) 316
PspN4I GGNNCC 2 cut(s) 627, 1048
PstNI CAGNNNCTG 1 cut(s) 253
PsuI RGATCY 1 cut(s) 68
RsaI GTAC 2 cut(s) 162, 748
RsaNI GTAC 2 cut(s) 161, 747
SatI GCNGC 6 cut(s) 251, 421, 435, 653, 825, 891
Sau3AI GATC 6 cut(s) 68, 103, 156, 445, 586, 717
ScaI AGTACT 1 cut(s) 748
SchI GAGTC 2 cut(s) 557, 983
ScrFI CCNGG 1 cut(s) 318
SduI GDGCHC 1 cut(s) 866
SfaNI GCATC 4 cut(s) 691, 840, 862, 877
SfcI CTRYAG 2 cut(s) 513, 630
SfoI GGCGCC 1 cut(s) 1048
Sse9I AATT 7 cut(s) 295, 321, 580, 807, 897, 975, 1007
SsiI CCGC 5 cut(s) 154, 223, 250, 354, 421
SspDI GGCGCC 1 cut(s) 1046
SspMI CTAG 2 cut(s) 194, 263
StyD4I CCNGG 1 cut(s) 316
StyI CCWWGG 2 cut(s) 262, 328
TaaI ACNGT 1 cut(s) 91
TaiI ACGT 5 cut(s) 51, 363, 385, 417, 986
TaqI TCGA 5 cut(s) 102, 441, 591, 720, 857
TasI AATT 7 cut(s) 295, 321, 580, 807, 897, 975, 1007
TatI WGTACW 1 cut(s) 746
TauI GCSGC 2 cut(s) 253, 423
TfiI GAWTC 1 cut(s) 134
TscAI CASTG 3 cut(s) 346, 430, 826
TseFI GTSAC 3 cut(s) 91, 117, 670
TseI GCWGC 4 cut(s) 434, 652, 824, 890
Tsp45I GTSAC 3 cut(s) 91, 117, 670
TspDTI ATGAA 4 cut(s) 74, 143, 296, 1020
TspGWI ACGGA 1 cut(s) 78
TspRI CASTG 3 cut(s) 346, 430, 826
VneI GTGCAC 1 cut(s) 862
XapI RAATTY 2 cut(s) 580, 1007
XbaI TCTAGA 1 cut(s) 193
XceI RCATGY 2 cut(s) 620, 775
XmaJI CCTAGG 1 cut(s) 262
XspI CTAG 2 cut(s) 194, 263
ZrmI AGTACT 1 cut(s) 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.