Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8392905.1

Orthogroup ID

OG0001141

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1228

Gene Structure 1228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8392905.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 641 bp

gagctacgctccgctaacgtcagcaaagagaggttcgcacgtgtcgctgtgcgacatgggctttatacccacgttcgccgcactgcaactgctgctctcgataatcaggttagggagtttactgaagttgtaagccgagaagaggagaagacgccggtatatagaggttctgtagaagcctccagagttcttgcagagattgtggagtctgtggctggtgctatttacgttgacttgaattttgatctcgaacaactttggaagatttttaggcatgttttggggcctatagttactattgaagagttgcagcaacaacctcaccccgtctcaaagttgcatcagttttgtcagaagcacgggaagcttgccaagatcgagtgcgagagagatgagaccaagagtactgcgaatgtgtatgttgatggcatgcttgttgcctcgggttcttctgaacagaaaaaaattgctgaggtcagtgctgctgagatggctttgtgtaacttgatgcaatcgatgtgcacgaatgatgcgtcggttgaagatgctgctggaattgatgggtcatttcctgttgaaagagcaacaaatgagttgcataatctttgtgccaagaagaagtggcctaaaccaaattacac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM Ribonuclease_3 dsrm

Protein Analysis

214

Amino Acids

23.93

Weight (kDa)

6.21

Isoelectric Point (pI)

38.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20420
fragaria_vesca	FvH4_3g23250
malus_domestica	MD03G1196200.v1.1 MD11G1212500.v1.1
prunus_persica	Prupe.4G219200_v2.0.a1 Prupe.4G219200_v2.0.a1 Prupe.4G219400_v2.0.a1 Prupe.4G219400_v2.0.a1
pyrus_communis	pycom03g14830 pycom11g18750
rosa_chinensis	RchiOBHm_Chr5g0040511 RchiOBHm_Chr5g0040931 RchiOBHm_Chr5g0040941
rosa_laevigata	RLG00000033986 RLG00000034014 RLG00000034016 RLG00000034026
rosa_multiflora	Rmu_co8051550.1_g000001 Rmu_co8392905.1_g000001 Rmu_sc0002475.1_g000019 Rmu_sc0002848.1_g000007 Rmu_sc0006651.1_g000007 Rmu_sc0006651.1_g000008 Rmu_sc0008620.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039580 Rroxscaffold_1G00039750 Rroxscaffold_1G00039760 Rroxscaffold_1G00040130 Rroxscaffold_1G00040850
rosa_rugosa	Rorug02G0350900 Rorug02G0350900 Rorug02G0351000 Rorug05G0185500 Rorug05G0188700 Rorug05G0188900 Rorug05G0188900
rosa_samantha	Rh2AG398700 Rh2BG409100 Rh2CG385500 Rh2CG540800 Rh2DG418900 Rh5AG272400 Rh5AG274300 Rh5AG274400 Rh5AG344200 Rh5BG276400 Rh5BG279300 Rh5BG279400 Rh5CG308900 Rh5CG311400 Rh5CG311600 Rh5DG284900 Rh5DG287500
rosa_wichuraiana	Rw2G032480 Rw5G025510 Rw5G025770 Rw5G025780 Rw5G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	12, 79
AcsI	RAATTY	1 cut(s)	238
AcuI	CTGAAG	1 cut(s)	144
AcvI	CACGTG	1 cut(s)	41
AcyI	GRCGYC	1 cut(s)	152
AfaI	GTAC	1 cut(s)	406
AfiI	CCNNNNNNNGG	1 cut(s)	142
AflIII	ACRYGT	1 cut(s)	40
AgsI	TTSAA	4 cut(s)	238, 302, 542, 578
AluBI	AGCT	2 cut(s)	4, 367
AluI	AGCT	2 cut(s)	4, 367
Alw21I	GWGCWC	1 cut(s)	524
Alw26I	GTCTC	2 cut(s)	334, 389
Alw44I	GTGCAC	1 cut(s)	520
Ama87I	CYCGRG	1 cut(s)	442
AoxI	GGCC	2 cut(s)	284, 623
ApaLI	GTGCAC	1 cut(s)	520
ApeKI	GCWGC	4 cut(s)	92, 310, 482, 548
ApoI	RAATTY	1 cut(s)	238
ArsI	GACNNNNNNTTYG	4 cut(s)	224, 256, 518, 550
AspS9I	GGNCC	1 cut(s)	284
AsuHPI	GGTGA	1 cut(s)	314
AvaI	CYCGRG	1 cut(s)	442
BaeGI	GKGCMC	1 cut(s)	524
BbrPI	CACGTG	1 cut(s)	41
BbsI	GAAGAC	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	524
BbvCI	CCTCAGC	1 cut(s)	471
BbvI	GCAGC	4 cut(s)	79, 322, 469, 535
BccI	CCATC	3 cut(s)	419, 484, 554
BcoDI	GTCTC	2 cut(s)	334, 389
BfmI	CTRYAG	2 cut(s)	171, 288
BisI	GCNGC	5 cut(s)	79, 93, 311, 483, 549
BlsI	GCNGC	5 cut(s)	80, 94, 312, 484, 550
BmcAI	AGTACT	1 cut(s)	406
BmeT110I	CYCGRG	1 cut(s)	442
BmgT120I	GGNCC	1 cut(s)	284
BmiI	GGNNCC	1 cut(s)	285
BmsI	GCATC	4 cut(s)	349, 498, 520, 535
BpiI	GAAGAC	1 cut(s)	155
BplI	GAGNNNNNCTC	1 cut(s)	25
BpmI	CTGGAG	1 cut(s)	166
Bpu10I	CCTNAGC	1 cut(s)	471
Bsa29I	ATCGAT	1 cut(s)	515
BsaAI	YACGTR	1 cut(s)	41
BsaHI	GRCGYC	1 cut(s)	152
BsaI	GGTCTC	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	441
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse118I	RCCGGY	1 cut(s)	154
BseCI	ATCGAT	1 cut(s)	515
BseDI	CCNNGG	1 cut(s)	441
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMII	CTCAG	2 cut(s)	462, 477
BseRI	GAGGAG	1 cut(s)	158
BseSI	GKGCMC	1 cut(s)	524
BseXI	GCAGC	4 cut(s)	79, 322, 469, 535
BshFI	GGCC	2 cut(s)	286, 625
BshVI	ATCGAT	1 cut(s)	515
BsiHKAI	GWGCWC	1 cut(s)	524
BsiHKCI	CYCGRG	1 cut(s)	442
BsiSI	CCGG	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmAI	GTCTC	2 cut(s)	334, 389
BsmBI	CGTCTC	1 cut(s)	334
BsnI	GGCC	2 cut(s)	286, 625
Bso31I	GGTCTC	1 cut(s)	389
BsoBI	CYCGRG	1 cut(s)	442
Bsp1286I	GDGCHC	1 cut(s)	524
Bsp143I	GATC	2 cut(s)	244, 375
BspACI	CCGC	2 cut(s)	12, 79
BspANI	GGCC	2 cut(s)	286, 625
BspCNI	CTCAG	2 cut(s)	463, 478
BspDI	ATCGAT	1 cut(s)	515
BspLI	GGNNCC	1 cut(s)	285
BspTNI	GGTCTC	1 cut(s)	389
BsrFI	RCCGGY	1 cut(s)	154
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	1 cut(s)	441
BssMI	GATC	2 cut(s)	244, 375
BssNI	GRCGYC	1 cut(s)	152
Bst6I	CTCTTC	2 cut(s)	135, 297
BstACI	GRCGYC	1 cut(s)	152
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstBAI	YACGTR	1 cut(s)	41
BstC8I	GCNNGC	2 cut(s)	369, 431
BstDEI	CTNAG	2 cut(s)	471, 486
BstKTI	GATC	2 cut(s)	247, 378
BstMAI	GTCTC	2 cut(s)	334, 389
BstMBI	GATC	2 cut(s)	244, 375
BstMWI	GCNNNNNNNGC	5 cut(s)	44, 58, 92, 364, 491
BstNSI	RCATGY	2 cut(s)	278, 433
BstSFI	CTRYAG	2 cut(s)	171, 288
BstSLI	GKGCMC	1 cut(s)	524
BstV1I	GCAGC	4 cut(s)	79, 322, 469, 535
BstV2I	GAAGAC	1 cut(s)	155
Bsu15I	ATCGAT	1 cut(s)	515
BsuRI	GGCC	2 cut(s)	286, 625
BsuTUI	ATCGAT	1 cut(s)	515
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	2 cut(s)	81, 484
Cac8I	GCNNGC	2 cut(s)	369, 431
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	284
ClaI	ATCGAT	1 cut(s)	515
CseI	GACGC	2 cut(s)	160, 522
Csp6I	GTAC	1 cut(s)	405
CviAII	CATG	3 cut(s)	56, 275, 430
CviJI	RGCY	9 cut(s)	4, 61, 135, 179, 215, 286, 367, 494, 625
CviKI_1	RGCY	9 cut(s)	4, 61, 135, 179, 215, 286, 367, 494, 625
CviQI	GTAC	1 cut(s)	405
DdeI	CTNAG	2 cut(s)	471, 486
DpnI	GATC	2 cut(s)	246, 377
DpnII	GATC	2 cut(s)	244, 375
Eam1104I	CTCTTC	2 cut(s)	135, 297
EarI	CTCTTC	2 cut(s)	135, 297
Eco31I	GGTCTC	1 cut(s)	389
Eco57I	CTGAAG	1 cut(s)	144
Eco72I	CACGTG	1 cut(s)	41
Eco88I	CYCGRG	1 cut(s)	442
EcoO109I	RGGNCCY	1 cut(s)	284
Esp3I	CGTCTC	1 cut(s)	334
FaeI	CATG	3 cut(s)	59, 278, 433
FaiI	YATR	9 cut(s)	57, 66, 160, 162, 276, 290, 420, 431, 600
FatI	CATG	3 cut(s)	55, 274, 429
Fnu4HI	GCNGC	5 cut(s)	79, 93, 311, 483, 549
Fsp4HI	GCNGC	5 cut(s)	79, 93, 311, 483, 549
GluI	GCNGC	5 cut(s)	79, 93, 311, 483, 549
GsuI	CTGGAG	1 cut(s)	166
HaeIII	GGCC	2 cut(s)	286, 625
HapII	CCGG	1 cut(s)	155
HgaI	GACGC	2 cut(s)	160, 522
Hin1I	GRCGYC	1 cut(s)	152
Hin1II	CATG	3 cut(s)	59, 278, 433
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	1 cut(s)	206
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	3 cut(s)	120, 232, 522
Hpy188I	TCNGA	2 cut(s)	354, 454
Hpy188III	TCNNGA	3 cut(s)	98, 183, 248
Hpy8I	GTNNAC	3 cut(s)	120, 232, 522
Hpy99I	CGWCG	1 cut(s)	538
HpyCH4IV	ACGT	4 cut(s)	18, 40, 72, 228
HpyCH4V	TGCA	7 cut(s)	86, 194, 310, 340, 511, 522, 598
HpyF10VI	GCNNNNNNNGC	5 cut(s)	44, 58, 92, 364, 491
HpyF3I	CTNAG	2 cut(s)	471, 486
HpySE526I	ACGT	4 cut(s)	18, 40, 72, 228
Hsp92I	GRCGYC	1 cut(s)	152
Hsp92II	CATG	3 cut(s)	59, 278, 433
Kzo9I	GATC	2 cut(s)	244, 375
LmnI	GCTCC	1 cut(s)	14
LpnPI	CCDG	6 cut(s)	92, 168, 196, 201, 537, 585
Lsp1109I	GCAGC	4 cut(s)	79, 322, 469, 535
LweI	GCATC	4 cut(s)	349, 498, 520, 535
MaeII	ACGT	4 cut(s)	18, 40, 72, 228
MaeIII	GTNAC	2 cut(s)	292, 500
MalI	GATC	2 cut(s)	246, 377
MboI	GATC	2 cut(s)	244, 375
MboII	GAAGA	7 cut(s)	152, 160, 274, 314, 441, 554, 628
MhlI	GDGCHC	1 cut(s)	524
MluCI	AATT	4 cut(s)	238, 465, 555, 634
MlyI	GAGTC	1 cut(s)	215
MnlI	CCTC	7 cut(s)	24, 136, 158, 190, 330, 451, 466
MspI	CCGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	5 cut(s)	44, 58, 92, 364, 491
NdeII	GATC	2 cut(s)	244, 375
NlaIII	CATG	3 cut(s)	59, 278, 433
NlaIV	GGNNCC	1 cut(s)	285
NmeAIII	GCCGAG	1 cut(s)	161
NspI	RCATGY	2 cut(s)	278, 433
PaeI	GCATGC	1 cut(s)	433
PcsI	WCGNNNNNNNCGW	2 cut(s)	521, 530
PkrI	GCNGC	5 cut(s)	80, 94, 312, 484, 550
PleI	GAGTC	1 cut(s)	214
PmaCI	CACGTG	1 cut(s)	41
PmlI	CACGTG	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	214
Ppu21I	YACGTR	1 cut(s)	41
PspCI	CACGTG	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	1 cut(s)	284
RsaI	GTAC	1 cut(s)	406
RsaNI	GTAC	1 cut(s)	405
SatI	GCNGC	5 cut(s)	79, 93, 311, 483, 549
Sau3AI	GATC	2 cut(s)	244, 375
Sau96I	GGNCC	1 cut(s)	284
ScaI	AGTACT	1 cut(s)	406
SchI	GAGTC	1 cut(s)	215
SduI	GDGCHC	1 cut(s)	524
SfaNI	GCATC	4 cut(s)	349, 498, 520, 535
SfcI	CTRYAG	2 cut(s)	171, 288
SphI	GCATGC	1 cut(s)	433
Sse9I	AATT	4 cut(s)	238, 465, 555, 634
SsiI	CCGC	2 cut(s)	12, 79
TaiI	ACGT	4 cut(s)	21, 43, 75, 231
TaqI	TCGA	4 cut(s)	99, 249, 378, 515
TasI	AATT	4 cut(s)	238, 465, 555, 634
TatI	WGTACW	1 cut(s)	404
TauI	GCSGC	1 cut(s)	81
TscAI	CASTG	2 cut(s)	88, 484
TseI	GCWGC	4 cut(s)	92, 310, 482, 548
TspRI	CASTG	2 cut(s)	88, 484
VneI	GTGCAC	1 cut(s)	520
XapI	RAATTY	1 cut(s)	238
XceI	RCATGY	2 cut(s)	278, 433
ZrmI	AGTACT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.