Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002848.1

Orthogroup ID

OG0001141

Physical Location & Seq

Genomic Coordinates Reverse (-)

19716 .. 20123

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002848.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atgaacccttacttgaacatgaaaatcttcacccaaacaccacgcgacctccacgcaccaccaccaccctcgccggaaatgaaacaagccgtggcagccgtggagataatcgtaagctacgcattcaagaacaagaggcttctagaggaggctctcacccacccttcccattccgacgctgtgtcgtatcagcggctcgagttcgtcggcgatgccgttcttagcctcgctgtaagcaactacctttttcttgcttaccccagaattgaccaaggcaacctctctatgctacgctccgctaacgtcagtaccgagaagctcgcacgtgttgccgtacgacacgggctttttggcttccttcgccactctgcacctgttctcgatgataaggtcaatcctgtaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM Ribonuclease_3 dsrm

Protein Analysis

135

Amino Acids

15.04

Weight (kDa)

9.0

Isoelectric Point (pI)

41.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20420
fragaria_vesca	FvH4_3g23250
malus_domestica	MD03G1196200.v1.1 MD11G1212500.v1.1
prunus_persica	Prupe.4G219200_v2.0.a1 Prupe.4G219200_v2.0.a1 Prupe.4G219400_v2.0.a1 Prupe.4G219400_v2.0.a1
pyrus_communis	pycom03g14830 pycom11g18750
rosa_chinensis	RchiOBHm_Chr5g0040511 RchiOBHm_Chr5g0040931 RchiOBHm_Chr5g0040941
rosa_laevigata	RLG00000033986 RLG00000034014 RLG00000034016 RLG00000034026
rosa_multiflora	Rmu_co8051550.1_g000001 Rmu_co8392905.1_g000001 Rmu_sc0002475.1_g000019 Rmu_sc0002848.1_g000007 Rmu_sc0006651.1_g000007 Rmu_sc0006651.1_g000008 Rmu_sc0008620.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039580 Rroxscaffold_1G00039750 Rroxscaffold_1G00039760 Rroxscaffold_1G00040130 Rroxscaffold_1G00040850
rosa_rugosa	Rorug02G0350900 Rorug02G0350900 Rorug02G0351000 Rorug05G0185500 Rorug05G0188700 Rorug05G0188900 Rorug05G0188900
rosa_samantha	Rh2AG398700 Rh2BG409100 Rh2CG385500 Rh2CG540800 Rh2DG418900 Rh5AG272400 Rh5AG274300 Rh5AG274400 Rh5AG344200 Rh5BG276400 Rh5BG279300 Rh5BG279400 Rh5CG308900 Rh5CG311400 Rh5CG311600 Rh5DG284900 Rh5DG287500
rosa_wichuraiana	Rw2G032480 Rw5G025510 Rw5G025770 Rw5G025780 Rw5G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	45
AciI	CCGC	2 cut(s)	193, 297
AcvI	CACGTG	1 cut(s)	326
AfaI	GTAC	2 cut(s)	310, 336
AflIII	ACRYGT	1 cut(s)	325
AgsI	TTSAA	2 cut(s)	16, 127
AhdI	GACNNNNNGTC	1 cut(s)	181
AluBI	AGCT	2 cut(s)	117, 319
AluI	AGCT	2 cut(s)	117, 319
Ama87I	CYCGRG	1 cut(s)	197
ApeKI	GCWGC	1 cut(s)	95
Asp700I	GAANNNNTTC	1 cut(s)	26
AsuHPI	GGTGA	2 cut(s)	22, 148
AvaI	CYCGRG	1 cut(s)	197
BaeI	ACNNNNGTAYC	2 cut(s)	292, 325
BbrPI	CACGTG	1 cut(s)	326
BbvI	GCAGC	1 cut(s)	107
BceAI	ACGGC	4 cut(s)	74, 83, 200, 317
BfaI	CTAG	1 cut(s)	143
BisI	GCNGC	2 cut(s)	96, 194
BlsI	GCNGC	2 cut(s)	97, 195
BmeRI	GACNNNNNGTC	1 cut(s)	181
BmeT110I	CYCGRG	1 cut(s)	197
BmsI	GCATC	1 cut(s)	202
BsaAI	YACGTR	1 cut(s)	326
BsaJI	CCNNGG	3 cut(s)	90, 99, 271
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
BseDI	CCNNGG	3 cut(s)	90, 99, 271
BseRI	GAGGAG	1 cut(s)	161
BseXI	GCAGC	1 cut(s)	107
BsgI	GTGCAG	1 cut(s)	354
Bsh1236I	CGCG	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	1 cut(s)	74
BsiWI	CGTACG	1 cut(s)	334
BsmI	GAATGC	1 cut(s)	122
BsoBI	CYCGRG	1 cut(s)	197
BspACI	CCGC	2 cut(s)	193, 297
BspFNI	CGCG	1 cut(s)	45
BssECI	CCNNGG	3 cut(s)	90, 99, 271
BssT1I	CCWWGG	1 cut(s)	271
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstBAI	YACGTR	1 cut(s)	326
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	1 cut(s)	221
BstDSI	CCRYGG	2 cut(s)	90, 99
BstFNI	CGCG	1 cut(s)	45
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 329, 360
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	107
BtgI	CCRYGG	2 cut(s)	90, 99
BtgZI	GCGATG	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	321
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	2 cut(s)	309, 335
CviAII	CATG	1 cut(s)	19
CviQI	GTAC	2 cut(s)	309, 335
DdeI	CTNAG	1 cut(s)	221
DriI	GACNNNNNGTC	1 cut(s)	181
Eam1105I	GACNNNNNGTC	1 cut(s)	181
Eco130I	CCWWGG	1 cut(s)	271
Eco72I	CACGTG	1 cut(s)	326
Eco88I	CYCGRG	1 cut(s)	197
EcoT14I	CCWWGG	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	1 cut(s)	22
FaiI	YATR	2 cut(s)	20, 287
FatI	CATG	1 cut(s)	18
Fnu4HI	GCNGC	2 cut(s)	96, 194
Fsp4HI	GCNGC	2 cut(s)	96, 194
FspBI	CTAG	1 cut(s)	143
GluI	GCNGC	2 cut(s)	96, 194
HapII	CCGG	1 cut(s)	74
HgaI	GACGC	1 cut(s)	185
Hin1II	CATG	1 cut(s)	22
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	2 cut(s)	22, 148
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	3 cut(s)	127, 143, 380
Hpy99I	CGWCG	2 cut(s)	179, 209
HpyAV	CCTTC	2 cut(s)	174, 368
HpyCH4IV	ACGT	2 cut(s)	303, 325
HpyCH4V	TGCA	1 cut(s)	371
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 329, 360
HpyF3I	CTNAG	1 cut(s)	221
HpySE526I	ACGT	2 cut(s)	303, 325
Hsp92II	CATG	1 cut(s)	22
LmnI	GCTCC	1 cut(s)	299
LpnPI	CCDG	3 cut(s)	87, 274, 387
Lsp1109I	GCAGC	1 cut(s)	107
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	1 cut(s)	143
MaeII	ACGT	2 cut(s)	303, 325
MboII	GAAGA	1 cut(s)	19
MluCI	AATT	2 cut(s)	264, 402
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	7 cut(s)	59, 79, 129, 139, 142, 236, 290
MroXI	GAANNNNTTC	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	193
MspI	CCGG	1 cut(s)	74
Mva1269I	GAATGC	1 cut(s)	122
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	3 cut(s)	95, 329, 360
NlaIII	CATG	1 cut(s)	22
PaeR7I	CTCGAG	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	2 cut(s)	213, 309
PctI	GAATGC	1 cut(s)	122
PdmI	GAANNNNTTC	1 cut(s)	26
Pfl23II	CGTACG	1 cut(s)	334
PkrI	GCNGC	2 cut(s)	97, 195
PmaCI	CACGTG	1 cut(s)	326
PmlI	CACGTG	1 cut(s)	326
Ppu21I	YACGTR	1 cut(s)	326
PspCI	CACGTG	1 cut(s)	326
PspLI	CGTACG	1 cut(s)	334
PspXI	VCTCGAGB	1 cut(s)	197
RsaI	GTAC	2 cut(s)	310, 336
RsaNI	GTAC	2 cut(s)	309, 335
SatI	GCNGC	2 cut(s)	96, 194
SetI	ASST	9 cut(s)	51, 119, 246, 282, 306, 321, 328, 376, 393
SfaNI	GCATC	1 cut(s)	202
Sfr274I	CTCGAG	1 cut(s)	197
SlaI	CTCGAG	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	2 cut(s)	264, 402
SsiI	CCGC	2 cut(s)	193, 297
SspMI	CTAG	1 cut(s)	143
StyI	CCWWGG	1 cut(s)	271
TaiI	ACGT	2 cut(s)	306, 328
TaqI	TCGA	2 cut(s)	198, 381
TasI	AATT	2 cut(s)	264, 402
TauI	GCSGC	1 cut(s)	196
TseI	GCWGC	1 cut(s)	95
TspDTI	ATGAA	3 cut(s)	17, 35, 95
XbaI	TCTAGA	1 cut(s)	142
XhoI	CTCGAG	1 cut(s)	197
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.