Rroxscaffold_1G00039580

Ribonuclease 3-like protein 2

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
57222408 .. 57225743
3336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00039580.1

Sequence Viewer

Length: 1074 bp
ATGAACGAAGGATCTAACGAGAAAATCCCCACCGCGACACCACTCGACCTCCACGCGCCGTCACCGGAAATGAAAGAATCGGTGGAAGCCGTGGAGCGGATCGTAGGCTACGACTTCAAGAACAACAAGAAGCTTCTAGAGGAAGCTCTCACCCACCCCTCCTTCCGCGCAGGCGACGCCGTTTCGTATCGGCGGCTGGCGTTCCTCGGCGACATCGTTCTTGGCCTCGCTGTAAGTAAACACCTCTTCCTTGCTTACCCTGGAATTGTCCAAAATGACCTCACTGATCTACGCTCCGTTAACGTCTGCAAAGAGAGGTTCGCACGTGTCGCCGTGCGACATGGGCTTTATACACACGTTCGCCGCACTGCAACCGCTGCTCTCGACGATCAGGTTAGGGAGTTTACTGAAGTTGTAAACCGAGAAGAGAAGCCGCCTCTATATAGAGGTTCTGTAGTAGCCCCCAGAGTTCTTGCAGAGATTGTGGAGTCTGTGGCTGGTGCTATTTTCGTTGACTTGAATTTTGATCTCCAAAAAATTTGGAAGATTTTTAGTCATGTTTTGGACCCTATTGTTACTCTTGGAGAGTTGCAGCAACAACCTCACCCCATCAGAAAGTTGCATCAGTTTTGCGAGAAGCACACGAAGGATGCCAATATCAAGTGCGAGAGAGATGAGACCAAGAGTACTGCGAATGTGTATGTTGATGGCATGCTTGTTGCCTCGGCTTCTTCTAAACAGCAAAAAATTGCTGAGGTCAATGCTGCTGAGATGGCTCTGTGTAACTTGATGCAATCGATGCGCACGAATGATGCGTCGGTTGAAGATGTTGGAATTGATGGGTCATTTCCCGTTGAAAGAGCAAAAAATGAGTTGGATAATCTTTGTGCCAAGAAGAAGTGGCCTAAACCAATTTACACCATCGAGCATGAAGAAGGTCTTCCACACGTGAAGAAGTTTGTATCCAAAGTAACTATACATGGTGTGCCATCTGTAACAGGAGACAAAAAGTCAACAAAGAAACATGCGAAGAATTCTGCTGCTTCTTTGATGATCCGTCATCTGCAAGACTGA

Protein Analysis

357

Amino Acids

39.86

Weight (kDa)

8.16

Isoelectric Point (pI)

28.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribonucleas_3_3 PF14622 42 - 174 5.1e-16 Ribonuclease-III-like
Ribonuclease_3 PF00636 65 - 172 4.3e-17 Ribonuclease III domain
dsrm PF00035 203 - 263 3.8e-08 Double-stranded RNA binding motif
DND1_DSRM PF14709 287 - 356 2.3e-13 double strand RNA binding domain from DEAD END PROTEIN 1
dsrm PF00035 288 - 355 6.7e-10 Double-stranded RNA binding motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 803
AccBSI CCGCTC 1 cut(s) 97
AccII CGCG 3 cut(s) 35, 56, 168
AciI CCGC 7 cut(s) 33, 97, 166, 193, 364, 375, 434
AclWI GGATC 3 cut(s) 19, 107, 1048
AcsI RAATTY 3 cut(s) 520, 537, 1033
AcuI CTGAAG 1 cut(s) 429
AcvI CACGTG 2 cut(s) 326, 949
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 1 cut(s) 688
AfiI CCNNNNNNNGG 1 cut(s) 96
AflIII ACRYGT 3 cut(s) 325, 355, 946
AgsI TTSAA 4 cut(s) 118, 520, 824, 857
AhdI GACNNNNNGTC 1 cut(s) 1009
AjnI CCWGG 1 cut(s) 259
AluBI AGCT 2 cut(s) 133, 146
AluI AGCT 2 cut(s) 133, 146
Alw26I GTCTC 2 cut(s) 671, 996
AlwI GGATC 3 cut(s) 19, 107, 1048
AoxI GGCC 2 cut(s) 223, 902
ApeKI GCWGC 4 cut(s) 377, 592, 764, 1040
ApoI RAATTY 3 cut(s) 520, 537, 1033
ArsI GACNNNNNNTTYG 4 cut(s) 506, 538, 800, 832
Asp700I GAANNNNTTC 1 cut(s) 939
AspLEI GCGC 3 cut(s) 58, 170, 804
AspS9I GGNCC 1 cut(s) 565
AsuHPI GGTGA 3 cut(s) 54, 142, 596
AvaII GGWCC 1 cut(s) 565
BbrPI CACGTG 2 cut(s) 326, 949
BbsI GAAGAC 1 cut(s) 932
BbvCI CCTCAGC 1 cut(s) 753
BbvI GCAGC 4 cut(s) 364, 604, 751, 1027
BccI CCATC 6 cut(s) 617, 701, 766, 833, 929, 997
BceAI ACGGC 4 cut(s) 43, 74, 164, 317
BciT130I CCWGG 1 cut(s) 261
BciVI GTATCC 1 cut(s) 973
BcoDI GTCTC 2 cut(s) 671, 996
BfaI CTAG 1 cut(s) 137
BfmI CTRYAG 1 cut(s) 453
BfuI GTATCC 1 cut(s) 973
BisI GCNGC 7 cut(s) 194, 364, 378, 434, 593, 765, 1041
BlsI GCNGC 7 cut(s) 195, 365, 379, 435, 594, 766, 1042
BmcAI AGTACT 1 cut(s) 688
Bme1390I CCNGG 1 cut(s) 261
Bme18I GGWCC 1 cut(s) 565
BmeRI GACNNNNNGTC 1 cut(s) 1009
BmgT120I GGNCC 1 cut(s) 565
BmiI GGNNCC 1 cut(s) 567
BmrFI CCNGG 1 cut(s) 261
BmsI GCATC 5 cut(s) 631, 640, 780, 789, 802
BpiI GAAGAC 1 cut(s) 932
Bpu10I CCTNAGC 1 cut(s) 753
Bsa29I ATCGAT 1 cut(s) 797
BsaAI YACGTR 2 cut(s) 326, 949
BsaHI GRCGYC 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 671
BsaJI CCNNGG 4 cut(s) 90, 205, 259, 723
BsaWI WCCGGW 1 cut(s) 64
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bsc4I CCNNNNNNNGG 1 cut(s) 96
BseBI CCWGG 1 cut(s) 261
BseCI ATCGAT 1 cut(s) 797
BseDI CCNNGG 4 cut(s) 90, 205, 259, 723
BseGI GGATG 1 cut(s) 655
BseLI CCNNNNNNNGG 1 cut(s) 96
BseMII CTCAG 2 cut(s) 744, 759
BseXI GCAGC 4 cut(s) 364, 604, 751, 1027
Bsh1236I CGCG 3 cut(s) 35, 56, 168
BshFI GGCC 2 cut(s) 225, 904
BshVI ATCGAT 1 cut(s) 797
BsiSI CCGG 1 cut(s) 65
BslI CCNNNNNNNGG 1 cut(s) 96
BsmAI GTCTC 2 cut(s) 671, 996
BsnI GGCC 2 cut(s) 225, 904
Bso31I GGTCTC 1 cut(s) 671
Bsp143I GATC 6 cut(s) 11, 99, 286, 388, 526, 1053
BspACI CCGC 7 cut(s) 33, 97, 166, 193, 364, 375, 434
BspANI GGCC 2 cut(s) 225, 904
BspCNI CTCAG 2 cut(s) 745, 760
BspDI ATCGAT 1 cut(s) 797
BspFNI CGCG 3 cut(s) 35, 56, 168
BspLI GGNNCC 1 cut(s) 567
BspPI GGATC 3 cut(s) 19, 107, 1048
BspTNI GGTCTC 1 cut(s) 671
BsrBI CCGCTC 1 cut(s) 97
BssECI CCNNGG 4 cut(s) 90, 205, 259, 723
BssMI GATC 6 cut(s) 11, 99, 286, 388, 526, 1053
BssNI GRCGYC 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 261
Bst6I CTCTTC 2 cut(s) 251, 420
BstACI GRCGYC 1 cut(s) 177
BstAPI GCANNNNNTGC 2 cut(s) 377, 799
BstBAI YACGTR 2 cut(s) 326, 949
BstC8I GCNNGC 3 cut(s) 172, 198, 713
BstDEI CTNAG 2 cut(s) 753, 768
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 1 cut(s) 655
BstFNI CGCG 3 cut(s) 35, 56, 168
BstHHI GCGC 3 cut(s) 58, 170, 804
BstKTI GATC 6 cut(s) 14, 102, 289, 391, 529, 1056
BstMAI GTCTC 2 cut(s) 671, 996
BstMBI GATC 6 cut(s) 11, 99, 286, 388, 526, 1053
BstMWI GCNNNNNNNGC 6 cut(s) 176, 329, 343, 377, 773, 799
BstNI CCWGG 1 cut(s) 261
BstNSI RCATGY 2 cut(s) 715, 1028
BstSCI CCNGG 1 cut(s) 259
BstSFI CTRYAG 1 cut(s) 453
BstUI CGCG 3 cut(s) 35, 56, 168
BstV1I GCAGC 4 cut(s) 364, 604, 751, 1027
BstV2I GAAGAC 1 cut(s) 932
BstX2I RGATCY 1 cut(s) 11
BstYI RGATCY 1 cut(s) 11
Bsu15I ATCGAT 1 cut(s) 797
BsuI GTATCC 1 cut(s) 973
BsuRI GGCC 2 cut(s) 225, 904
BsuTUI ATCGAT 1 cut(s) 797
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 1 cut(s) 655
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 2 cut(s) 282, 366
Cac8I GCNNGC 3 cut(s) 172, 198, 713
CfoI GCGC 3 cut(s) 58, 170, 804
Cfr13I GGNCC 1 cut(s) 565
ClaI ATCGAT 1 cut(s) 797
CseI GACGC 2 cut(s) 185, 804
Csp6I GTAC 1 cut(s) 687
CviAII CATG 6 cut(s) 341, 557, 712, 929, 980, 1025
CviQI GTAC 1 cut(s) 687
DdeI CTNAG 2 cut(s) 753, 768
DpnI GATC 6 cut(s) 13, 101, 288, 390, 528, 1055
DpnII GATC 6 cut(s) 11, 99, 286, 388, 526, 1053
DriI GACNNNNNGTC 1 cut(s) 1009
Eam1104I CTCTTC 2 cut(s) 251, 420
Eam1105I GACNNNNNGTC 1 cut(s) 1009
EarI CTCTTC 2 cut(s) 251, 420
Eco31I GGTCTC 1 cut(s) 671
Eco47I GGWCC 1 cut(s) 565
Eco57I CTGAAG 1 cut(s) 429
Eco72I CACGTG 2 cut(s) 326, 949
EcoRI GAATTC 1 cut(s) 1033
EcoRII CCWGG 1 cut(s) 259
FaeI CATG 6 cut(s) 344, 560, 715, 932, 983, 1028
FalI AAGNNNNNCTT 2 cut(s) 924, 956
FatI CATG 6 cut(s) 340, 556, 711, 928, 979, 1024
Fnu4HI GCNGC 7 cut(s) 194, 364, 378, 434, 593, 765, 1041
FokI GGATG 1 cut(s) 662
Fsp4HI GCNGC 7 cut(s) 194, 364, 378, 434, 593, 765, 1041
FspAI RTGCGCAY 1 cut(s) 803
FspBI CTAG 1 cut(s) 137
FspI TGCGCA 1 cut(s) 803
GlaI GCGC 3 cut(s) 57, 169, 803
GluI GCNGC 7 cut(s) 194, 364, 378, 434, 593, 765, 1041
HaeIII GGCC 2 cut(s) 225, 904
HapII CCGG 1 cut(s) 65
HgaI GACGC 2 cut(s) 185, 804
HhaI GCGC 3 cut(s) 58, 170, 804
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 6 cut(s) 344, 560, 715, 932, 983, 1028
Hin6I GCGC 3 cut(s) 56, 168, 802
HinP1I GCGC 3 cut(s) 56, 168, 802
HincII GTYRAC 3 cut(s) 301, 514, 1014
HindII GTYRAC 3 cut(s) 301, 514, 1014
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 2 cut(s) 77, 488
HpaI GTTAAC 1 cut(s) 301
HpaII CCGG 1 cut(s) 65
HphI GGTGA 3 cut(s) 54, 142, 596
Hpy166II GTNNAC 6 cut(s) 239, 301, 405, 418, 514, 1014
Hpy188I TCNGA 1 cut(s) 614
Hpy188III TCNNGA 3 cut(s) 118, 137, 383
Hpy8I GTNNAC 6 cut(s) 239, 301, 405, 418, 514, 1014
Hpy99I CGWCG 3 cut(s) 179, 389, 820
HpyAV CCTTC 3 cut(s) 172, 640, 929
HpyCH4IV ACGT 4 cut(s) 303, 325, 357, 948
HpyCH4V TGCA 7 cut(s) 309, 371, 476, 592, 622, 793, 1066
HpyF10VI GCNNNNNNNGC 6 cut(s) 176, 329, 343, 377, 773, 799
HpyF3I CTNAG 2 cut(s) 753, 768
HpySE526I ACGT 4 cut(s) 303, 325, 357, 948
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 6 cut(s) 344, 560, 715, 932, 983, 1028
HspAI GCGC 3 cut(s) 56, 168, 802
KspAI GTTAAC 1 cut(s) 301
Kzo9I GATC 6 cut(s) 11, 99, 286, 388, 526, 1053
LmnI GCTCC 2 cut(s) 94, 299
LpnPI CCDG 9 cut(s) 78, 156, 182, 246, 273, 377, 478, 483, 984
Lsp1109I GCAGC 4 cut(s) 364, 604, 751, 1027
LweI GCATC 5 cut(s) 631, 640, 780, 789, 802
MaeI CTAG 1 cut(s) 137
MaeII ACGT 4 cut(s) 303, 325, 357, 948
MaeIII GTNAC 5 cut(s) 60, 574, 782, 970, 994
MalI GATC 6 cut(s) 13, 101, 288, 390, 528, 1055
MbiI CCGCTC 1 cut(s) 97
MboI GATC 6 cut(s) 11, 99, 286, 388, 526, 1053
MflI RGATCY 1 cut(s) 11
MluCI AATT 7 cut(s) 264, 520, 537, 747, 834, 912, 1033
MlyI GAGTC 1 cut(s) 497
MmeI TCCRAC 2 cut(s) 811, 855
MroXI GAANNNNTTC 1 cut(s) 939
MseI TTAA 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 377
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 261
MvaI CCWGG 1 cut(s) 261
MvnI CGCG 3 cut(s) 35, 56, 168
MwoI GCNNNNNNNGC 6 cut(s) 176, 329, 343, 377, 773, 799
NdeII GATC 6 cut(s) 11, 99, 286, 388, 526, 1053
NlaIII CATG 6 cut(s) 344, 560, 715, 932, 983, 1028
NlaIV GGNNCC 1 cut(s) 567
NmeAIII GCCGAG 2 cut(s) 186, 704
NmuCI GTSAC 1 cut(s) 60
NsbI TGCGCA 1 cut(s) 803
NspI RCATGY 2 cut(s) 715, 1028
PaeI GCATGC 1 cut(s) 715
PcsI WCGNNNNNNNCGW 4 cut(s) 108, 213, 803, 812
PdmI GAANNNNTTC 1 cut(s) 939
PfeI GAWTC 1 cut(s) 77
PkrI GCNGC 7 cut(s) 195, 365, 379, 435, 594, 766, 1042
PleI GAGTC 1 cut(s) 496
PmaCI CACGTG 2 cut(s) 326, 949
PmlI CACGTG 2 cut(s) 326, 949
PpsI GAGTC 1 cut(s) 496
Ppu21I YACGTR 2 cut(s) 326, 949
Psp6I CCWGG 1 cut(s) 259
PspCI CACGTG 2 cut(s) 326, 949
PspGI CCWGG 1 cut(s) 259
PspN4I GGNNCC 1 cut(s) 567
PspPI GGNCC 1 cut(s) 565
PsuI RGATCY 1 cut(s) 11
RsaI GTAC 1 cut(s) 688
RsaNI GTAC 1 cut(s) 687
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 7 cut(s) 194, 364, 378, 434, 593, 765, 1041
Sau3AI GATC 6 cut(s) 11, 99, 286, 388, 526, 1053
Sau96I GGNCC 1 cut(s) 565
ScaI AGTACT 1 cut(s) 688
SchI GAGTC 1 cut(s) 497
ScrFI CCNGG 1 cut(s) 261
SfaNI GCATC 5 cut(s) 631, 640, 780, 789, 802
SfcI CTRYAG 1 cut(s) 453
SinI GGWCC 1 cut(s) 565
SphI GCATGC 1 cut(s) 715
Sse9I AATT 7 cut(s) 264, 520, 537, 747, 834, 912, 1033
SsiI CCGC 7 cut(s) 33, 97, 166, 193, 364, 375, 434
SspMI CTAG 1 cut(s) 137
StyD4I CCNGG 1 cut(s) 259
TaiI ACGT 4 cut(s) 306, 328, 360, 951
TaqI TCGA 4 cut(s) 45, 384, 797, 924
TasI AATT 7 cut(s) 264, 520, 537, 747, 834, 912, 1033
TatI WGTACW 1 cut(s) 686
TauI GCSGC 3 cut(s) 196, 366, 436
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 2 cut(s) 289, 373
TseFI GTSAC 1 cut(s) 60
TseI GCWGC 4 cut(s) 377, 592, 764, 1040
Tsp45I GTSAC 1 cut(s) 60
TspDTI ATGAA 3 cut(s) 17, 86, 945
TspGWI ACGGA 2 cut(s) 286, 1046
TspRI CASTG 2 cut(s) 289, 373
VpaK11BI GGWCC 1 cut(s) 565
XapI RAATTY 3 cut(s) 520, 537, 1033
XbaI TCTAGA 1 cut(s) 136
XceI RCATGY 2 cut(s) 715, 1028
XmnI GAANNNNTTC 1 cut(s) 939
XspI CTAG 1 cut(s) 137
ZrmI AGTACT 1 cut(s) 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.