Ribonuclease 3-like protein 2
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Ribonucleas_3_3 | PF14622 | 42 - 174 | 5.1e-16 | Ribonuclease-III-like |
| Ribonuclease_3 | PF00636 | 65 - 172 | 4.3e-17 | Ribonuclease III domain |
| dsrm | PF00035 | 203 - 263 | 3.8e-08 | Double-stranded RNA binding motif |
| DND1_DSRM | PF14709 | 287 - 356 | 2.3e-13 | double strand RNA binding domain from DEAD END PROTEIN 1 |
| dsrm | PF00035 | 288 - 355 | 6.7e-10 | Double-stranded RNA binding motif |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 803 |
| AccBSI | CCGCTC | 1 cut(s) | 97 |
| AccII | CGCG | 3 cut(s) | 35, 56, 168 |
| AciI | CCGC | 7 cut(s) | 33, 97, 166, 193, 364, 375, 434 |
| AclWI | GGATC | 3 cut(s) | 19, 107, 1048 |
| AcsI | RAATTY | 3 cut(s) | 520, 537, 1033 |
| AcuI | CTGAAG | 1 cut(s) | 429 |
| AcvI | CACGTG | 2 cut(s) | 326, 949 |
| AcyI | GRCGYC | 1 cut(s) | 177 |
| AfaI | GTAC | 1 cut(s) | 688 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 96 |
| AflIII | ACRYGT | 3 cut(s) | 325, 355, 946 |
| AgsI | TTSAA | 4 cut(s) | 118, 520, 824, 857 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1009 |
| AjnI | CCWGG | 1 cut(s) | 259 |
| AluBI | AGCT | 2 cut(s) | 133, 146 |
| AluI | AGCT | 2 cut(s) | 133, 146 |
| Alw26I | GTCTC | 2 cut(s) | 671, 996 |
| AlwI | GGATC | 3 cut(s) | 19, 107, 1048 |
| AoxI | GGCC | 2 cut(s) | 223, 902 |
| ApeKI | GCWGC | 4 cut(s) | 377, 592, 764, 1040 |
| ApoI | RAATTY | 3 cut(s) | 520, 537, 1033 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 506, 538, 800, 832 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 939 |
| AspLEI | GCGC | 3 cut(s) | 58, 170, 804 |
| AspS9I | GGNCC | 1 cut(s) | 565 |
| AsuHPI | GGTGA | 3 cut(s) | 54, 142, 596 |
| AvaII | GGWCC | 1 cut(s) | 565 |
| BbrPI | CACGTG | 2 cut(s) | 326, 949 |
| BbsI | GAAGAC | 1 cut(s) | 932 |
| BbvCI | CCTCAGC | 1 cut(s) | 753 |
| BbvI | GCAGC | 4 cut(s) | 364, 604, 751, 1027 |
| BccI | CCATC | 6 cut(s) | 617, 701, 766, 833, 929, 997 |
| BceAI | ACGGC | 4 cut(s) | 43, 74, 164, 317 |
| BciT130I | CCWGG | 1 cut(s) | 261 |
| BciVI | GTATCC | 1 cut(s) | 973 |
| BcoDI | GTCTC | 2 cut(s) | 671, 996 |
| BfaI | CTAG | 1 cut(s) | 137 |
| BfmI | CTRYAG | 1 cut(s) | 453 |
| BfuI | GTATCC | 1 cut(s) | 973 |
| BisI | GCNGC | 7 cut(s) | 194, 364, 378, 434, 593, 765, 1041 |
| BlsI | GCNGC | 7 cut(s) | 195, 365, 379, 435, 594, 766, 1042 |
| BmcAI | AGTACT | 1 cut(s) | 688 |
| Bme1390I | CCNGG | 1 cut(s) | 261 |
| Bme18I | GGWCC | 1 cut(s) | 565 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1009 |
| BmgT120I | GGNCC | 1 cut(s) | 565 |
| BmiI | GGNNCC | 1 cut(s) | 567 |
| BmrFI | CCNGG | 1 cut(s) | 261 |
| BmsI | GCATC | 5 cut(s) | 631, 640, 780, 789, 802 |
| BpiI | GAAGAC | 1 cut(s) | 932 |
| Bpu10I | CCTNAGC | 1 cut(s) | 753 |
| Bsa29I | ATCGAT | 1 cut(s) | 797 |
| BsaAI | YACGTR | 2 cut(s) | 326, 949 |
| BsaHI | GRCGYC | 1 cut(s) | 177 |
| BsaI | GGTCTC | 1 cut(s) | 671 |
| BsaJI | CCNNGG | 4 cut(s) | 90, 205, 259, 723 |
| BsaWI | WCCGGW | 1 cut(s) | 64 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 33, 63 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 96 |
| BseBI | CCWGG | 1 cut(s) | 261 |
| BseCI | ATCGAT | 1 cut(s) | 797 |
| BseDI | CCNNGG | 4 cut(s) | 90, 205, 259, 723 |
| BseGI | GGATG | 1 cut(s) | 655 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 96 |
| BseMII | CTCAG | 2 cut(s) | 744, 759 |
| BseXI | GCAGC | 4 cut(s) | 364, 604, 751, 1027 |
| Bsh1236I | CGCG | 3 cut(s) | 35, 56, 168 |
| BshFI | GGCC | 2 cut(s) | 225, 904 |
| BshVI | ATCGAT | 1 cut(s) | 797 |
| BsiSI | CCGG | 1 cut(s) | 65 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 96 |
| BsmAI | GTCTC | 2 cut(s) | 671, 996 |
| BsnI | GGCC | 2 cut(s) | 225, 904 |
| Bso31I | GGTCTC | 1 cut(s) | 671 |
| Bsp143I | GATC | 6 cut(s) | 11, 99, 286, 388, 526, 1053 |
| BspACI | CCGC | 7 cut(s) | 33, 97, 166, 193, 364, 375, 434 |
| BspANI | GGCC | 2 cut(s) | 225, 904 |
| BspCNI | CTCAG | 2 cut(s) | 745, 760 |
| BspDI | ATCGAT | 1 cut(s) | 797 |
| BspFNI | CGCG | 3 cut(s) | 35, 56, 168 |
| BspLI | GGNNCC | 1 cut(s) | 567 |
| BspPI | GGATC | 3 cut(s) | 19, 107, 1048 |
| BspTNI | GGTCTC | 1 cut(s) | 671 |
| BsrBI | CCGCTC | 1 cut(s) | 97 |
| BssECI | CCNNGG | 4 cut(s) | 90, 205, 259, 723 |
| BssMI | GATC | 6 cut(s) | 11, 99, 286, 388, 526, 1053 |
| BssNI | GRCGYC | 1 cut(s) | 177 |
| Bst2UI | CCWGG | 1 cut(s) | 261 |
| Bst6I | CTCTTC | 2 cut(s) | 251, 420 |
| BstACI | GRCGYC | 1 cut(s) | 177 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 377, 799 |
| BstBAI | YACGTR | 2 cut(s) | 326, 949 |
| BstC8I | GCNNGC | 3 cut(s) | 172, 198, 713 |
| BstDEI | CTNAG | 2 cut(s) | 753, 768 |
| BstDSI | CCRYGG | 1 cut(s) | 90 |
| BstF5I | GGATG | 1 cut(s) | 655 |
| BstFNI | CGCG | 3 cut(s) | 35, 56, 168 |
| BstHHI | GCGC | 3 cut(s) | 58, 170, 804 |
| BstKTI | GATC | 6 cut(s) | 14, 102, 289, 391, 529, 1056 |
| BstMAI | GTCTC | 2 cut(s) | 671, 996 |
| BstMBI | GATC | 6 cut(s) | 11, 99, 286, 388, 526, 1053 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 176, 329, 343, 377, 773, 799 |
| BstNI | CCWGG | 1 cut(s) | 261 |
| BstNSI | RCATGY | 2 cut(s) | 715, 1028 |
| BstSCI | CCNGG | 1 cut(s) | 259 |
| BstSFI | CTRYAG | 1 cut(s) | 453 |
| BstUI | CGCG | 3 cut(s) | 35, 56, 168 |
| BstV1I | GCAGC | 4 cut(s) | 364, 604, 751, 1027 |
| BstV2I | GAAGAC | 1 cut(s) | 932 |
| BstX2I | RGATCY | 1 cut(s) | 11 |
| BstYI | RGATCY | 1 cut(s) | 11 |
| Bsu15I | ATCGAT | 1 cut(s) | 797 |
| BsuI | GTATCC | 1 cut(s) | 973 |
| BsuRI | GGCC | 2 cut(s) | 225, 904 |
| BsuTUI | ATCGAT | 1 cut(s) | 797 |
| BtgI | CCRYGG | 1 cut(s) | 90 |
| BtsCI | GGATG | 1 cut(s) | 655 |
| BtsI | GCAGTG | 1 cut(s) | 366 |
| BtsIMutI | CAGTG | 2 cut(s) | 282, 366 |
| Cac8I | GCNNGC | 3 cut(s) | 172, 198, 713 |
| CfoI | GCGC | 3 cut(s) | 58, 170, 804 |
| Cfr13I | GGNCC | 1 cut(s) | 565 |
| ClaI | ATCGAT | 1 cut(s) | 797 |
| CseI | GACGC | 2 cut(s) | 185, 804 |
| Csp6I | GTAC | 1 cut(s) | 687 |
| CviAII | CATG | 6 cut(s) | 341, 557, 712, 929, 980, 1025 |
| CviQI | GTAC | 1 cut(s) | 687 |
| DdeI | CTNAG | 2 cut(s) | 753, 768 |
| DpnI | GATC | 6 cut(s) | 13, 101, 288, 390, 528, 1055 |
| DpnII | GATC | 6 cut(s) | 11, 99, 286, 388, 526, 1053 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1009 |
| Eam1104I | CTCTTC | 2 cut(s) | 251, 420 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1009 |
| EarI | CTCTTC | 2 cut(s) | 251, 420 |
| Eco31I | GGTCTC | 1 cut(s) | 671 |
| Eco47I | GGWCC | 1 cut(s) | 565 |
| Eco57I | CTGAAG | 1 cut(s) | 429 |
| Eco72I | CACGTG | 2 cut(s) | 326, 949 |
| EcoRI | GAATTC | 1 cut(s) | 1033 |
| EcoRII | CCWGG | 1 cut(s) | 259 |
| FaeI | CATG | 6 cut(s) | 344, 560, 715, 932, 983, 1028 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 924, 956 |
| FatI | CATG | 6 cut(s) | 340, 556, 711, 928, 979, 1024 |
| Fnu4HI | GCNGC | 7 cut(s) | 194, 364, 378, 434, 593, 765, 1041 |
| FokI | GGATG | 1 cut(s) | 662 |
| Fsp4HI | GCNGC | 7 cut(s) | 194, 364, 378, 434, 593, 765, 1041 |
| FspAI | RTGCGCAY | 1 cut(s) | 803 |
| FspBI | CTAG | 1 cut(s) | 137 |
| FspI | TGCGCA | 1 cut(s) | 803 |
| GlaI | GCGC | 3 cut(s) | 57, 169, 803 |
| GluI | GCNGC | 7 cut(s) | 194, 364, 378, 434, 593, 765, 1041 |
| HaeIII | GGCC | 2 cut(s) | 225, 904 |
| HapII | CCGG | 1 cut(s) | 65 |
| HgaI | GACGC | 2 cut(s) | 185, 804 |
| HhaI | GCGC | 3 cut(s) | 58, 170, 804 |
| Hin1I | GRCGYC | 1 cut(s) | 177 |
| Hin1II | CATG | 6 cut(s) | 344, 560, 715, 932, 983, 1028 |
| Hin6I | GCGC | 3 cut(s) | 56, 168, 802 |
| HinP1I | GCGC | 3 cut(s) | 56, 168, 802 |
| HincII | GTYRAC | 3 cut(s) | 301, 514, 1014 |
| HindII | GTYRAC | 3 cut(s) | 301, 514, 1014 |
| HindIII | AAGCTT | 1 cut(s) | 131 |
| HinfI | GANTC | 2 cut(s) | 77, 488 |
| HpaI | GTTAAC | 1 cut(s) | 301 |
| HpaII | CCGG | 1 cut(s) | 65 |
| HphI | GGTGA | 3 cut(s) | 54, 142, 596 |
| Hpy166II | GTNNAC | 6 cut(s) | 239, 301, 405, 418, 514, 1014 |
| Hpy188I | TCNGA | 1 cut(s) | 614 |
| Hpy188III | TCNNGA | 3 cut(s) | 118, 137, 383 |
| Hpy8I | GTNNAC | 6 cut(s) | 239, 301, 405, 418, 514, 1014 |
| Hpy99I | CGWCG | 3 cut(s) | 179, 389, 820 |
| HpyAV | CCTTC | 3 cut(s) | 172, 640, 929 |
| HpyCH4IV | ACGT | 4 cut(s) | 303, 325, 357, 948 |
| HpyCH4V | TGCA | 7 cut(s) | 309, 371, 476, 592, 622, 793, 1066 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 176, 329, 343, 377, 773, 799 |
| HpyF3I | CTNAG | 2 cut(s) | 753, 768 |
| HpySE526I | ACGT | 4 cut(s) | 303, 325, 357, 948 |
| Hsp92I | GRCGYC | 1 cut(s) | 177 |
| Hsp92II | CATG | 6 cut(s) | 344, 560, 715, 932, 983, 1028 |
| HspAI | GCGC | 3 cut(s) | 56, 168, 802 |
| KspAI | GTTAAC | 1 cut(s) | 301 |
| Kzo9I | GATC | 6 cut(s) | 11, 99, 286, 388, 526, 1053 |
| LmnI | GCTCC | 2 cut(s) | 94, 299 |
| LpnPI | CCDG | 9 cut(s) | 78, 156, 182, 246, 273, 377, 478, 483, 984 |
| Lsp1109I | GCAGC | 4 cut(s) | 364, 604, 751, 1027 |
| LweI | GCATC | 5 cut(s) | 631, 640, 780, 789, 802 |
| MaeI | CTAG | 1 cut(s) | 137 |
| MaeII | ACGT | 4 cut(s) | 303, 325, 357, 948 |
| MaeIII | GTNAC | 5 cut(s) | 60, 574, 782, 970, 994 |
| MalI | GATC | 6 cut(s) | 13, 101, 288, 390, 528, 1055 |
| MbiI | CCGCTC | 1 cut(s) | 97 |
| MboI | GATC | 6 cut(s) | 11, 99, 286, 388, 526, 1053 |
| MflI | RGATCY | 1 cut(s) | 11 |
| MluCI | AATT | 7 cut(s) | 264, 520, 537, 747, 834, 912, 1033 |
| MlyI | GAGTC | 1 cut(s) | 497 |
| MmeI | TCCRAC | 2 cut(s) | 811, 855 |
| MroXI | GAANNNNTTC | 1 cut(s) | 939 |
| MseI | TTAA | 1 cut(s) | 300 |
| MspA1I | CMGCKG | 1 cut(s) | 377 |
| MspI | CCGG | 1 cut(s) | 65 |
| MspR9I | CCNGG | 1 cut(s) | 261 |
| MvaI | CCWGG | 1 cut(s) | 261 |
| MvnI | CGCG | 3 cut(s) | 35, 56, 168 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 176, 329, 343, 377, 773, 799 |
| NdeII | GATC | 6 cut(s) | 11, 99, 286, 388, 526, 1053 |
| NlaIII | CATG | 6 cut(s) | 344, 560, 715, 932, 983, 1028 |
| NlaIV | GGNNCC | 1 cut(s) | 567 |
| NmeAIII | GCCGAG | 2 cut(s) | 186, 704 |
| NmuCI | GTSAC | 1 cut(s) | 60 |
| NsbI | TGCGCA | 1 cut(s) | 803 |
| NspI | RCATGY | 2 cut(s) | 715, 1028 |
| PaeI | GCATGC | 1 cut(s) | 715 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 108, 213, 803, 812 |
| PdmI | GAANNNNTTC | 1 cut(s) | 939 |
| PfeI | GAWTC | 1 cut(s) | 77 |
| PkrI | GCNGC | 7 cut(s) | 195, 365, 379, 435, 594, 766, 1042 |
| PleI | GAGTC | 1 cut(s) | 496 |
| PmaCI | CACGTG | 2 cut(s) | 326, 949 |
| PmlI | CACGTG | 2 cut(s) | 326, 949 |
| PpsI | GAGTC | 1 cut(s) | 496 |
| Ppu21I | YACGTR | 2 cut(s) | 326, 949 |
| Psp6I | CCWGG | 1 cut(s) | 259 |
| PspCI | CACGTG | 2 cut(s) | 326, 949 |
| PspGI | CCWGG | 1 cut(s) | 259 |
| PspN4I | GGNNCC | 1 cut(s) | 567 |
| PspPI | GGNCC | 1 cut(s) | 565 |
| PsuI | RGATCY | 1 cut(s) | 11 |
| RsaI | GTAC | 1 cut(s) | 688 |
| RsaNI | GTAC | 1 cut(s) | 687 |
| SaqAI | TTAA | 1 cut(s) | 300 |
| SatI | GCNGC | 7 cut(s) | 194, 364, 378, 434, 593, 765, 1041 |
| Sau3AI | GATC | 6 cut(s) | 11, 99, 286, 388, 526, 1053 |
| Sau96I | GGNCC | 1 cut(s) | 565 |
| ScaI | AGTACT | 1 cut(s) | 688 |
| SchI | GAGTC | 1 cut(s) | 497 |
| ScrFI | CCNGG | 1 cut(s) | 261 |
| SfaNI | GCATC | 5 cut(s) | 631, 640, 780, 789, 802 |
| SfcI | CTRYAG | 1 cut(s) | 453 |
| SinI | GGWCC | 1 cut(s) | 565 |
| SphI | GCATGC | 1 cut(s) | 715 |
| Sse9I | AATT | 7 cut(s) | 264, 520, 537, 747, 834, 912, 1033 |
| SsiI | CCGC | 7 cut(s) | 33, 97, 166, 193, 364, 375, 434 |
| SspMI | CTAG | 1 cut(s) | 137 |
| StyD4I | CCNGG | 1 cut(s) | 259 |
| TaiI | ACGT | 4 cut(s) | 306, 328, 360, 951 |
| TaqI | TCGA | 4 cut(s) | 45, 384, 797, 924 |
| TasI | AATT | 7 cut(s) | 264, 520, 537, 747, 834, 912, 1033 |
| TatI | WGTACW | 1 cut(s) | 686 |
| TauI | GCSGC | 3 cut(s) | 196, 366, 436 |
| TfiI | GAWTC | 1 cut(s) | 77 |
| Tru1I | TTAA | 1 cut(s) | 300 |
| Tru9I | TTAA | 1 cut(s) | 300 |
| TscAI | CASTG | 2 cut(s) | 289, 373 |
| TseFI | GTSAC | 1 cut(s) | 60 |
| TseI | GCWGC | 4 cut(s) | 377, 592, 764, 1040 |
| Tsp45I | GTSAC | 1 cut(s) | 60 |
| TspDTI | ATGAA | 3 cut(s) | 17, 86, 945 |
| TspGWI | ACGGA | 2 cut(s) | 286, 1046 |
| TspRI | CASTG | 2 cut(s) | 289, 373 |
| VpaK11BI | GGWCC | 1 cut(s) | 565 |
| XapI | RAATTY | 3 cut(s) | 520, 537, 1033 |
| XbaI | TCTAGA | 1 cut(s) | 136 |
| XceI | RCATGY | 2 cut(s) | 715, 1028 |
| XmnI | GAANNNNTTC | 1 cut(s) | 939 |
| XspI | CTAG | 1 cut(s) | 137 |
| ZrmI | AGTACT | 1 cut(s) | 688 |