Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001141

Physical Location & Seq

Genomic Coordinates Forward (+)

16316866 .. 16319452

Gene Structure 2587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g23250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGAACCCCCACTTAAGCATGAAAATCTTCACCCCAACACACACGCCACCACCATCCTCGCCGGAAATGAAACAAGCCGTGGCAGCCGTGGAGATGATCGTAGGCTACGTATTCAAGAACAAGAGGCTTCTAGAGGAGGCTCTCACCCATCCCTCCCACCCCGACGCCGTGTCGTATCAGCGGCTCGAGTTCGTCGGCGACGCCGTTCTTAGCCTCGCTATAAGCAACTACCTCTTTCTTGCTTACCCCAGAATTGACCAAGGCGACCTCACTTTGCTACGCTCCGCTAATGTCAGCACCGAGAAGCTCGCACGTGTCGCCGTACGACACGGGTTTTTCCGCTTCCTTCGCCACTCTACACCTGTTCTCAATGATCAGGTTAGGGAGTTTACTGAAGTGGTCAGTGGAGAAGTGGAAACTCCACTTGTATATAGAGGGTCTGTAAAAGCCCCTAAAGTTCTTGCAGATATTGTGGAGTCTGTGGCTGCTGCTATTTATGTTGACTTGAATTTTGATCTGGAAAAACTTTGGATGATTTTTAGGCATGTTTTGGAGCCTATAGTTACTCTCAAAGACTTACACCAACAACCTCAACCTGTGACAAAGTTGTTTGATGTTTGCCAAAAGAACGGGAAGCATGTCGACATCAAGTATTGGAGGGATGAGATGAAAGGTATTGCAAGTGTGTATGTTGATGGCAAATTTGTTGCCTCGGGTTCTTCTGAGTATAAAGAAGTTGCCAGGGTCAATGCTGCTGAGATAGCTCTATGTAAGTTGTCAAAATTGATGCGCATGGATGATGTGTCGATTGAAGTTATTGCTGAAACTGATGGGTCATTTCATATTGAAGAAGCAAAAAATAAGTTGTATCAGCTTTGTGGGAAGAAGAAGTGGCCTAAACCAGTCTACAAGTATGATTCTTTACTTAACTTGATGGATTCTTTACTTAACTTGATGGATTTAATTTTGTTATATGCTTTCTATTTTGTCCTGTTCTTTGTAGCCACTGCACTAGATTTTATTGCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM Ribonuclease_3 dsrm

Protein Analysis

344

Amino Acids

38.88

Weight (kDa)

6.56

Isoelectric Point (pI)

30.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonucleas_3_3	PF14622	40 - 171	1.5e-16	Ribonuclease-III-like
Ribonuclease_3	PF00636	60 - 168	2.7e-22	Ribonuclease III domain
dsrm	PF00035	199 - 259	8.5e-07	Double-stranded RNA binding motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20420
fragaria_vesca	FvH4_3g23250
malus_domestica	MD03G1196200.v1.1 MD11G1212500.v1.1
prunus_persica	Prupe.4G219200_v2.0.a1 Prupe.4G219200_v2.0.a1 Prupe.4G219400_v2.0.a1 Prupe.4G219400_v2.0.a1
pyrus_communis	pycom03g14830 pycom11g18750
rosa_chinensis	RchiOBHm_Chr5g0040511 RchiOBHm_Chr5g0040931 RchiOBHm_Chr5g0040941
rosa_laevigata	RLG00000033986 RLG00000034014 RLG00000034016 RLG00000034026
rosa_multiflora	Rmu_co8051550.1_g000001 Rmu_co8392905.1_g000001 Rmu_sc0002475.1_g000019 Rmu_sc0002848.1_g000007 Rmu_sc0006651.1_g000007 Rmu_sc0006651.1_g000008 Rmu_sc0008620.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039580 Rroxscaffold_1G00039750 Rroxscaffold_1G00039760 Rroxscaffold_1G00040130 Rroxscaffold_1G00040850
rosa_rugosa	Rorug02G0350900 Rorug02G0350900 Rorug02G0351000 Rorug05G0185500 Rorug05G0188700 Rorug05G0188900 Rorug05G0188900
rosa_samantha	Rh2AG398700 Rh2BG409100 Rh2CG385500 Rh2CG540800 Rh2DG418900 Rh5AG272400 Rh5AG274300 Rh5AG274400 Rh5AG344200 Rh5BG276400 Rh5BG279300 Rh5BG279400 Rh5CG308900 Rh5CG311400 Rh5CG311600 Rh5DG284900 Rh5DG287500
rosa_wichuraiana	Rw2G032480 Rw5G025510 Rw5G025770 Rw5G025780 Rw5G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	791
AccI	GTMKAC	2 cut(s)	642, 906
AciI	CCGC	3 cut(s)	181, 285, 340
AcsI	RAATTY	2 cut(s)	508, 701
AcuI	CTGAAG	1 cut(s)	414
AcvI	CACGTG	1 cut(s)	314
AcyI	GRCGYC	2 cut(s)	165, 201
AfaI	GTAC	1 cut(s)	324
AflII	CTTAAG	1 cut(s)	13
AflIII	ACRYGT	1 cut(s)	313
AgsI	TTSAA	4 cut(s)	115, 508, 812, 848
AhdI	GACNNNNNGTC	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	740
AluBI	AGCT	3 cut(s)	307, 764, 874
AluI	AGCT	3 cut(s)	307, 764, 874
Ama87I	CYCGRG	2 cut(s)	185, 712
AoxI	GGCC	1 cut(s)	893
ApeKI	GCWGC	4 cut(s)	83, 485, 488, 752
ApoI	RAATTY	2 cut(s)	508, 701
ArsI	GACNNNNNNTTYG	2 cut(s)	494, 526
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	1 cut(s)	792
AsuHPI	GGTGA	2 cut(s)	22, 136
AvaI	CYCGRG	2 cut(s)	185, 712
BbrPI	CACGTG	1 cut(s)	314
BbvI	GCAGC	4 cut(s)	95, 472, 475, 739
BccI	CCATC	6 cut(s)	61, 156, 689, 824, 928, 949
BceAI	ACGGC	5 cut(s)	62, 71, 152, 188, 305
BciT130I	CCWGG	1 cut(s)	742
BclI	TGATCA	1 cut(s)	373
BfaI	CTAG	2 cut(s)	131, 1013
BfmI	CTRYAG	1 cut(s)	558
BfrI	CTTAAG	1 cut(s)	13
BisI	GCNGC	5 cut(s)	84, 182, 486, 489, 753
BlsI	GCNGC	5 cut(s)	85, 183, 487, 490, 754
Bme1390I	CCNGG	1 cut(s)	742
BmeRI	GACNNNNNGTC	1 cut(s)	169
BmeT110I	CYCGRG	2 cut(s)	185, 712
BmiI	GGNNCC	1 cut(s)	555
BmrFI	CCNGG	1 cut(s)	742
BmsI	GCATC	1 cut(s)	777
BsaAI	YACGTR	2 cut(s)	109, 314
BsaHI	GRCGYC	2 cut(s)	165, 201
BsaJI	CCNNGG	5 cut(s)	78, 87, 259, 711, 741
Bse1I	ACTGG	1 cut(s)	902
BseBI	CCWGG	1 cut(s)	742
BseDI	CCNNGG	5 cut(s)	78, 87, 259, 711, 741
BseGI	GGATG	5 cut(s)	53, 148, 537, 667, 802
BseMII	CTCAG	2 cut(s)	714, 747
BseNI	ACTGG	1 cut(s)	902
BseRI	GAGGAG	1 cut(s)	149
BseXI	GCAGC	4 cut(s)	95, 472, 475, 739
BsgI	GTGCAG	1 cut(s)	993
BshFI	GGCC	1 cut(s)	895
BsiHKCI	CYCGRG	2 cut(s)	185, 712
BsiSI	CCGG	1 cut(s)	62
BsiWI	CGTACG	1 cut(s)	322
BsnI	GGCC	1 cut(s)	895
BsoBI	CYCGRG	2 cut(s)	185, 712
Bsp143I	GATC	3 cut(s)	96, 373, 514
BspACI	CCGC	3 cut(s)	181, 285, 340
BspANI	GGCC	1 cut(s)	895
BspCNI	CTCAG	2 cut(s)	715, 748
BspLI	GGNNCC	1 cut(s)	555
BspTI	CTTAAG	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	902
BssECI	CCNNGG	5 cut(s)	78, 87, 259, 711, 741
BssMI	GATC	3 cut(s)	96, 373, 514
BssNI	GRCGYC	2 cut(s)	165, 201
BssT1I	CCWWGG	1 cut(s)	259
Bst2UI	CCWGG	1 cut(s)	742
BstACI	GRCGYC	2 cut(s)	165, 201
BstAFI	CTTAAG	1 cut(s)	13
BstBAI	YACGTR	2 cut(s)	109, 314
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	3 cut(s)	209, 723, 756
BstDSI	CCRYGG	2 cut(s)	78, 87
BstF5I	GGATG	5 cut(s)	53, 148, 537, 667, 802
BstHHI	GCGC	1 cut(s)	792
BstKTI	GATC	3 cut(s)	99, 376, 517
BstMBI	GATC	3 cut(s)	96, 373, 514
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 317, 348, 761
BstNI	CCWGG	1 cut(s)	742
BstNSI	RCATGY	2 cut(s)	548, 641
BstSCI	CCNGG	1 cut(s)	740
BstSFI	CTRYAG	1 cut(s)	558
BstSNI	TACGTA	1 cut(s)	109
BstV1I	GCAGC	4 cut(s)	95, 472, 475, 739
BsuRI	GGCC	1 cut(s)	895
BtgI	CCRYGG	2 cut(s)	78, 87
BtsCI	GGATG	5 cut(s)	53, 148, 537, 667, 802
BtsI	GCAGTG	1 cut(s)	1005
BtsIMutI	CAGTG	2 cut(s)	409, 1005
Cac8I	GCNNGC	1 cut(s)	309
CfoI	GCGC	1 cut(s)	792
CseI	GACGC	2 cut(s)	173, 209
Csp6I	GTAC	1 cut(s)	323
CviAII	CATG	4 cut(s)	19, 545, 638, 793
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	3 cut(s)	209, 723, 756
DpnI	GATC	3 cut(s)	98, 375, 516
DpnII	GATC	3 cut(s)	96, 373, 514
DriI	GACNNNNNGTC	1 cut(s)	169
Eam1105I	GACNNNNNGTC	1 cut(s)	169
Eco105I	TACGTA	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	414
Eco72I	CACGTG	1 cut(s)	314
Eco88I	CYCGRG	2 cut(s)	185, 712
EcoRII	CCWGG	1 cut(s)	740
EcoT14I	CCWWGG	1 cut(s)	259
ErhI	CCWWGG	1 cut(s)	259
FaeI	CATG	4 cut(s)	22, 548, 641, 796
FatI	CATG	4 cut(s)	18, 544, 637, 792
FbaI	TGATCA	1 cut(s)	373
FblI	GTMKAC	2 cut(s)	642, 906
Fnu4HI	GCNGC	5 cut(s)	84, 182, 486, 489, 753
FokI	GGATG	5 cut(s)	40, 135, 544, 674, 809
Fsp4HI	GCNGC	5 cut(s)	84, 182, 486, 489, 753
FspAI	RTGCGCAY	1 cut(s)	791
FspBI	CTAG	2 cut(s)	131, 1013
FspI	TGCGCA	1 cut(s)	791
GlaI	GCGC	1 cut(s)	791
GluI	GCNGC	5 cut(s)	84, 182, 486, 489, 753
HaeIII	GGCC	1 cut(s)	895
HapII	CCGG	1 cut(s)	62
HgaI	GACGC	2 cut(s)	173, 209
HhaI	GCGC	1 cut(s)	792
Hin1I	GRCGYC	2 cut(s)	165, 201
Hin1II	CATG	4 cut(s)	22, 548, 641, 796
Hin6I	GCGC	1 cut(s)	790
HinP1I	GCGC	1 cut(s)	790
HincII	GTYRAC	2 cut(s)	502, 643
HindII	GTYRAC	2 cut(s)	502, 643
HinfI	GANTC	3 cut(s)	476, 917, 938
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	2 cut(s)	22, 136
Hpy166II	GTNNAC	4 cut(s)	390, 502, 643, 907
Hpy188I	TCNGA	1 cut(s)	724
Hpy188III	TCNNGA	3 cut(s)	115, 131, 518
Hpy8I	GTNNAC	4 cut(s)	390, 502, 643, 907
Hpy99I	CGWCG	3 cut(s)	167, 197, 203
HpyAV	CCTTC	1 cut(s)	356
HpyCH4IV	ACGT	2 cut(s)	108, 313
HpyCH4V	TGCA	3 cut(s)	464, 680, 1010
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 317, 348, 761
HpyF3I	CTNAG	3 cut(s)	209, 723, 756
HpySE526I	ACGT	2 cut(s)	108, 313
Hsp92I	GRCGYC	2 cut(s)	165, 201
Hsp92II	CATG	4 cut(s)	22, 548, 641, 796
HspAI	GCGC	1 cut(s)	790
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	3 cut(s)	96, 373, 514
LmnI	GCTCC	2 cut(s)	287, 553
Lsp1109I	GCAGC	4 cut(s)	95, 472, 475, 739
LweI	GCATC	1 cut(s)	777
MaeI	CTAG	2 cut(s)	131, 1013
MaeII	ACGT	2 cut(s)	108, 313
MaeIII	GTNAC	2 cut(s)	562, 598
MalI	GATC	3 cut(s)	98, 375, 516
MboI	GATC	3 cut(s)	96, 373, 514
MboII	GAAGA	5 cut(s)	19, 711, 860, 895, 898
MluCI	AATT	5 cut(s)	252, 508, 701, 782, 963
MlyI	GAGTC	1 cut(s)	485
MroXI	GAANNNNTTC	1 cut(s)	26
MseI	TTAA	5 cut(s)	14, 927, 948, 962, 1030
MspA1I	CMGCKG	1 cut(s)	181
MspCI	CTTAAG	1 cut(s)	13
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	742
MvaI	CCWGG	1 cut(s)	742
MwoI	GCNNNNNNNGC	4 cut(s)	83, 317, 348, 761
NdeII	GATC	3 cut(s)	96, 373, 514
NlaIII	CATG	4 cut(s)	22, 548, 641, 796
NlaIV	GGNNCC	1 cut(s)	555
NmuCI	GTSAC	1 cut(s)	598
NsbI	TGCGCA	1 cut(s)	791
NspI	RCATGY	2 cut(s)	548, 641
PaeR7I	CTCGAG	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 201
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	2 cut(s)	917, 938
Pfl23II	CGTACG	1 cut(s)	322
PkrI	GCNGC	5 cut(s)	85, 183, 487, 490, 754
PleI	GAGTC	1 cut(s)	484
PmaCI	CACGTG	1 cut(s)	314
PmlI	CACGTG	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	484
Ppu21I	YACGTR	2 cut(s)	109, 314
Psp6I	CCWGG	1 cut(s)	740
PspCI	CACGTG	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	740
PspLI	CGTACG	1 cut(s)	322
PspN4I	GGNNCC	1 cut(s)	555
PspXI	VCTCGAGB	1 cut(s)	185
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
SalI	GTCGAC	1 cut(s)	641
SaqAI	TTAA	5 cut(s)	14, 927, 948, 962, 1030
SatI	GCNGC	5 cut(s)	84, 182, 486, 489, 753
Sau3AI	GATC	3 cut(s)	96, 373, 514
SchI	GAGTC	1 cut(s)	485
ScrFI	CCNGG	1 cut(s)	742
SfaNI	GCATC	1 cut(s)	777
SfcI	CTRYAG	1 cut(s)	558
Sfr274I	CTCGAG	1 cut(s)	185
SlaI	CTCGAG	1 cut(s)	185
SmlI	CTYRAG	2 cut(s)	13, 185
SmoI	CTYRAG	2 cut(s)	13, 185
SnaBI	TACGTA	1 cut(s)	109
Sse9I	AATT	5 cut(s)	252, 508, 701, 782, 963
SsiI	CCGC	3 cut(s)	181, 285, 340
SspMI	CTAG	2 cut(s)	131, 1013
StyD4I	CCNGG	1 cut(s)	740
StyI	CCWWGG	1 cut(s)	259
TaiI	ACGT	2 cut(s)	111, 316
TaqI	TCGA	3 cut(s)	186, 642, 806
TasI	AATT	5 cut(s)	252, 508, 701, 782, 963
TauI	GCSGC	1 cut(s)	184
TfiI	GAWTC	2 cut(s)	917, 938
Tru1I	TTAA	5 cut(s)	14, 927, 948, 962, 1030
Tru9I	TTAA	5 cut(s)	14, 927, 948, 962, 1030
TscAI	CASTG	2 cut(s)	409, 1012
TseFI	GTSAC	1 cut(s)	598
TseI	GCWGC	4 cut(s)	83, 485, 488, 752
Tsp45I	GTSAC	1 cut(s)	598
TspDTI	ATGAA	5 cut(s)	17, 35, 83, 683, 830
TspRI	CASTG	2 cut(s)	409, 1012
Vha464I	CTTAAG	1 cut(s)	13
XapI	RAATTY	2 cut(s)	508, 701
XbaI	TCTAGA	1 cut(s)	130
XceI	RCATGY	2 cut(s)	548, 641
XhoI	CTCGAG	1 cut(s)	185
XmiI	GTMKAC	2 cut(s)	642, 906
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	2 cut(s)	131, 1013

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.