Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001141

Physical Location & Seq

Genomic Coordinates Forward (+)

13792137 .. 13793035

Gene Structure 899 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G219400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTCGCTTGTATATGGTGGGTCTGTAAAAGCCCCTAAGATTCTTGCAGATACTGTGGTGTCTGTGGCAGCTGCTATATATGTTGACTTGAATTTTTATCTGGAGAAACTGATATTCAGGGGTCTATTGGAGCCTATAGTTACTCTTGAAGACTTGCAAGGTCAACTGCAACCCGTGACAATGTTGTTTGAGCTTTGGCAGAAGCATGGGAAGCATGTTGATATCAAACATTGGCGAGATGAGAGGAAGAGTATTGCTAGTGTGTATGTTGATGGAGAATTTGTTGCTTCGGGTTCTTCTGAACATAAGGAATGTGCCAAGCTTGATGCTGCTAAGGTAGCTGTGGATAAGTTATCGCCATCGATGGGTGTAAATGATGAGTCGTTTGAAGGTGTTGTCTTAATGGATGGATCATTTCATATTGAAGAAGCAAAACAGAAGTTGCATGAGATTTGTGACCAGAAGAAATGGCCTAGACCAATTTGCCACATTGAGAAAGATGAAGGTCCTTCACATGAGAAGAGATTTGTGTCCTCAGTTAAAATTGCAACTATAGATGGGGTGCTATACATGAAGGGAGATGAAAACTCGAGAGTAAGAGATGCAGACACTTCTGCACTTGATGATCCGGGCTTTAAAAAGCTCTACTTACTGCATTTGAAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM Ribonuclease_3 dsrm

Protein Analysis

223

Amino Acids

24.85

Weight (kDa)

5.85

Isoelectric Point (pI)

36.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20420
fragaria_vesca	FvH4_3g23250
malus_domestica	MD03G1196200.v1.1 MD11G1212500.v1.1
prunus_persica	Prupe.4G219200_v2.0.a1 Prupe.4G219200_v2.0.a1 Prupe.4G219400_v2.0.a1 Prupe.4G219400_v2.0.a1
pyrus_communis	pycom03g14830 pycom11g18750
rosa_chinensis	RchiOBHm_Chr5g0040511 RchiOBHm_Chr5g0040931 RchiOBHm_Chr5g0040941
rosa_laevigata	RLG00000033986 RLG00000034014 RLG00000034016 RLG00000034026
rosa_multiflora	Rmu_co8051550.1_g000001 Rmu_co8392905.1_g000001 Rmu_sc0002475.1_g000019 Rmu_sc0002848.1_g000007 Rmu_sc0006651.1_g000007 Rmu_sc0006651.1_g000008 Rmu_sc0008620.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039580 Rroxscaffold_1G00039750 Rroxscaffold_1G00039760 Rroxscaffold_1G00040130 Rroxscaffold_1G00040850
rosa_rugosa	Rorug02G0350900 Rorug02G0350900 Rorug02G0351000 Rorug05G0185500 Rorug05G0188700 Rorug05G0188900 Rorug05G0188900
rosa_samantha	Rh2AG398700 Rh2BG409100 Rh2CG385500 Rh2CG540800 Rh2DG418900 Rh5AG272400 Rh5AG274300 Rh5AG274400 Rh5AG344200 Rh5BG276400 Rh5BG279300 Rh5BG279400 Rh5CG308900 Rh5CG311400 Rh5CG311600 Rh5DG284900 Rh5DG287500
rosa_wichuraiana	Rw2G032480 Rw5G025510 Rw5G025770 Rw5G025780 Rw5G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	418, 620
AcsI	RAATTY	2 cut(s)	91, 278
AfiI	CCNNNNNNNGG	1 cut(s)	365
AgsI	TTSAA	5 cut(s)	91, 149, 389, 425, 661
AluBI	AGCT	5 cut(s)	71, 193, 322, 341, 643
AluI	AGCT	5 cut(s)	71, 193, 322, 341, 643
AlwI	GGATC	2 cut(s)	418, 620
AlwNI	CAGNNNCTG	1 cut(s)	53
Ama87I	CYCGRG	1 cut(s)	589
AoxI	GGCC	1 cut(s)	470
ApeKI	GCWGC	3 cut(s)	68, 71, 329
ApoI	RAATTY	2 cut(s)	91, 278
AspS9I	GGNCC	1 cut(s)	506
AsuC2I	CCSGG	1 cut(s)	630
AvaI	CYCGRG	1 cut(s)	589
AvaII	GGWCC	1 cut(s)	506
BaeI	ACNNNNGTAYC	2 cut(s)	42, 75
BbsI	GAAGAC	1 cut(s)	156
BbvI	GCAGC	3 cut(s)	58, 80, 316
BccI	CCATC	5 cut(s)	266, 358, 367, 401, 551
BcnI	CCSGG	1 cut(s)	630
BfaI	CTAG	2 cut(s)	258, 474
BfmI	CTRYAG	2 cut(s)	135, 552
BisI	GCNGC	3 cut(s)	69, 72, 330
BlsI	GCNGC	3 cut(s)	70, 73, 331
Bme1390I	CCNGG	1 cut(s)	630
Bme18I	GGWCC	1 cut(s)	506
BmeT110I	CYCGRG	1 cut(s)	589
BmgT120I	GGNCC	1 cut(s)	506
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	1 cut(s)	630
BmsI	GCATC	2 cut(s)	316, 592
BpiI	GAAGAC	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	122
Bpu10I	CCTNAGC	1 cut(s)	333
BpuMI	CCSGG	1 cut(s)	630
Bsa29I	ATCGAT	1 cut(s)	362
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	1 cut(s)	365
BseCI	ATCGAT	1 cut(s)	362
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	1 cut(s)	365
BseMII	CTCAG	1 cut(s)	549
BseXI	GCAGC	3 cut(s)	58, 80, 316
BsgI	GTGCAG	1 cut(s)	600
BshFI	GGCC	1 cut(s)	472
BshVI	ATCGAT	1 cut(s)	362
BsiHKCI	CYCGRG	1 cut(s)	589
BsiSI	CCGG	1 cut(s)	629
BslI	CCNNNNNNNGG	1 cut(s)	365
BsnI	GGCC	1 cut(s)	472
BsoBI	CYCGRG	1 cut(s)	589
Bsp143I	GATC	2 cut(s)	410, 625
BspANI	GGCC	1 cut(s)	472
BspCNI	CTCAG	1 cut(s)	548
BspDI	ATCGAT	1 cut(s)	362
BspLI	GGNNCC	1 cut(s)	132
BspPI	GGATC	2 cut(s)	418, 620
BssMI	GATC	2 cut(s)	410, 625
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	2 cut(s)	242, 515
BstDEI	CTNAG	3 cut(s)	36, 333, 535
BstF5I	GGATG	1 cut(s)	412
BstKTI	GATC	2 cut(s)	413, 628
BstMBI	GATC	2 cut(s)	410, 625
BstMWI	GCNNNNNNNGC	2 cut(s)	211, 338
BstNSI	RCATGY	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	628
BstSFI	CTRYAG	2 cut(s)	135, 552
BstV1I	GCAGC	3 cut(s)	58, 80, 316
BstV2I	GAAGAC	1 cut(s)	156
Bsu15I	ATCGAT	1 cut(s)	362
BsuRI	GGCC	1 cut(s)	472
BsuTUI	ATCGAT	1 cut(s)	362
BtsCI	GGATG	1 cut(s)	412
CaiI	CAGNNNCTG	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	506
ClaI	ATCGAT	1 cut(s)	362
CviAII	CATG	5 cut(s)	206, 215, 446, 515, 571
CviJI	RGCY	9 cut(s)	32, 71, 133, 193, 322, 341, 472, 633, 643
CviKI_1	RGCY	9 cut(s)	32, 71, 133, 193, 322, 341, 472, 633, 643
DdeI	CTNAG	3 cut(s)	36, 333, 535
DpnI	GATC	2 cut(s)	412, 627
DpnII	GATC	2 cut(s)	410, 625
DraI	TTTAAA	1 cut(s)	637
Eam1104I	CTCTTC	2 cut(s)	242, 515
EarI	CTCTTC	2 cut(s)	242, 515
Eco32I	GATATC	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	506
Eco88I	CYCGRG	1 cut(s)	589
EcoO109I	RGGNCCY	1 cut(s)	506
EcoRV	GATATC	1 cut(s)	223
FaeI	CATG	5 cut(s)	209, 218, 449, 518, 574
FalI	AAGNNNNNCTT	2 cut(s)	632, 664
FatI	CATG	5 cut(s)	205, 214, 445, 514, 570
Fnu4HI	GCNGC	3 cut(s)	69, 72, 330
FokI	GGATG	1 cut(s)	419
Fsp4HI	GCNGC	3 cut(s)	69, 72, 330
FspBI	CTAG	2 cut(s)	258, 474
GluI	GCNGC	3 cut(s)	69, 72, 330
GsuI	CTGGAG	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	472
HapII	CCGG	1 cut(s)	629
Hin1II	CATG	5 cut(s)	209, 218, 449, 518, 574
HincII	GTYRAC	2 cut(s)	85, 164
HindII	GTYRAC	2 cut(s)	85, 164
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	2 cut(s)	40, 380
HpaII	CCGG	1 cut(s)	629
Hpy166II	GTNNAC	2 cut(s)	85, 164
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	3 cut(s)	101, 146, 591
Hpy8I	GTNNAC	2 cut(s)	85, 164
HpyAV	CCTTC	5 cut(s)	383, 497, 519, 568, 655
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4V	TGCA	8 cut(s)	47, 157, 169, 445, 548, 605, 617, 655
HpyF10VI	GCNNNNNNNGC	2 cut(s)	211, 338
HpyF3I	CTNAG	3 cut(s)	36, 333, 535
Hsp92II	CATG	5 cut(s)	209, 218, 449, 518, 574
Kzo9I	GATC	2 cut(s)	410, 625
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	4 cut(s)	86, 103, 473, 642
Lsp1109I	GCAGC	3 cut(s)	58, 80, 316
LweI	GCATC	2 cut(s)	316, 592
MaeI	CTAG	2 cut(s)	258, 474
MaeIII	GTNAC	3 cut(s)	139, 175, 455
MalI	GATC	2 cut(s)	412, 627
MboI	GATC	2 cut(s)	410, 625
MboII	GAAGA	6 cut(s)	161, 259, 288, 437, 475, 532
MluCI	AATT	4 cut(s)	91, 278, 480, 543
MlyI	GAGTC	1 cut(s)	389
MnlI	CCTC	2 cut(s)	237, 544
MseI	TTAA	3 cut(s)	401, 540, 636
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	1 cut(s)	629
MspR9I	CCNGG	1 cut(s)	630
MwoI	GCNNNNNNNGC	2 cut(s)	211, 338
NciI	CCSGG	1 cut(s)	630
NdeII	GATC	2 cut(s)	410, 625
NlaIII	CATG	5 cut(s)	209, 218, 449, 518, 574
NlaIV	GGNNCC	1 cut(s)	132
NmuCI	GTSAC	2 cut(s)	175, 455
NspI	RCATGY	1 cut(s)	218
PaeR7I	CTCGAG	1 cut(s)	589
PfeI	GAWTC	1 cut(s)	40
PkrI	GCNGC	3 cut(s)	70, 73, 331
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
PpuMI	RGGWCCY	1 cut(s)	506
Psp5II	RGGWCCY	1 cut(s)	506
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	506
PspPPI	RGGWCCY	1 cut(s)	506
PstNI	CAGNNNCTG	1 cut(s)	53
PvuII	CAGCTG	1 cut(s)	71
SaqAI	TTAA	3 cut(s)	401, 540, 636
SatI	GCNGC	3 cut(s)	69, 72, 330
Sau3AI	GATC	2 cut(s)	410, 625
Sau96I	GGNCC	1 cut(s)	506
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	1 cut(s)	630
SetI	ASST	9 cut(s)	73, 163, 195, 324, 339, 343, 394, 508, 645
SfaNI	GCATC	2 cut(s)	316, 592
SfcI	CTRYAG	2 cut(s)	135, 552
Sfr274I	CTCGAG	1 cut(s)	589
SinI	GGWCC	1 cut(s)	506
SlaI	CTCGAG	1 cut(s)	589
SmlI	CTYRAG	1 cut(s)	589
SmoI	CTYRAG	1 cut(s)	589
Sse9I	AATT	4 cut(s)	91, 278, 480, 543
SspMI	CTAG	2 cut(s)	258, 474
StyD4I	CCNGG	1 cut(s)	628
TaaI	ACNGT	1 cut(s)	55
TaqI	TCGA	2 cut(s)	362, 590
TasI	AATT	4 cut(s)	91, 278, 480, 543
TfiI	GAWTC	1 cut(s)	40
Tru1I	TTAA	3 cut(s)	401, 540, 636
Tru9I	TTAA	3 cut(s)	401, 540, 636
TseFI	GTSAC	2 cut(s)	175, 455
TseI	GCWGC	3 cut(s)	68, 71, 329
Tsp45I	GTSAC	2 cut(s)	175, 455
TspDTI	ATGAA	4 cut(s)	407, 516, 587, 597
VpaK11BI	GGWCC	1 cut(s)	506
XapI	RAATTY	2 cut(s)	91, 278
XceI	RCATGY	1 cut(s)	218
XhoI	CTCGAG	1 cut(s)	589
XspI	CTAG	2 cut(s)	258, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.