Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001141

Physical Location & Seq

Genomic Coordinates Reverse (-)

71764693 .. 71779137

Gene Structure 14445 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG540800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGCAGGTAAGGAGGTTGATTTTAGTGATGTGATCCCTAATCAAATGCCGGAATGTTTGCTCCACAATCTGGCAATGCTGTTACAACGTCCCCGACGTCAGGCTAATATTCGGGATCTTCCCGAGATGATGAATGTTTCTGAGACAGTTAGGGAGTTTACTGAAGCTATAAGACGAGAAGAGGAGAAGACGCCTGTATTTGGACGGTCTGTAGAAGCCCCTAAAGTTCTTGCAGATATTGTGGAGTCTGTGGCTGGTGCTATTTATTTTGACTTGAATTTTGATCTGGAACTACTTTGGATGGAAACATCCAAGCTTCATTCCAGTCCGTCAGGTGAGCTAAACCGAGCATTCCGCAGACTTGTGGCAGGAGGTGGAGACATAGCTTGGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM Ribonuclease_3 dsrm

Protein Analysis

131

Amino Acids

14.83

Weight (kDa)

4.95

Isoelectric Point (pI)

67.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20420
fragaria_vesca	FvH4_3g23250
malus_domestica	MD03G1196200.v1.1 MD11G1212500.v1.1
prunus_persica	Prupe.4G219200_v2.0.a1 Prupe.4G219200_v2.0.a1 Prupe.4G219400_v2.0.a1 Prupe.4G219400_v2.0.a1
pyrus_communis	pycom03g14830 pycom11g18750
rosa_chinensis	RchiOBHm_Chr5g0040511 RchiOBHm_Chr5g0040931 RchiOBHm_Chr5g0040941
rosa_laevigata	RLG00000033986 RLG00000034014 RLG00000034016 RLG00000034026
rosa_multiflora	Rmu_co8051550.1_g000001 Rmu_co8392905.1_g000001 Rmu_sc0002475.1_g000019 Rmu_sc0002848.1_g000007 Rmu_sc0006651.1_g000007 Rmu_sc0006651.1_g000008 Rmu_sc0008620.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039580 Rroxscaffold_1G00039750 Rroxscaffold_1G00039760 Rroxscaffold_1G00040130 Rroxscaffold_1G00040850
rosa_rugosa	Rorug02G0350900 Rorug02G0350900 Rorug02G0351000 Rorug05G0185500 Rorug05G0188700 Rorug05G0188900 Rorug05G0188900
rosa_samantha	Rh2AG398700 Rh2BG409100 Rh2CG385500 Rh2CG540800 Rh2DG418900 Rh5AG272400 Rh5AG274300 Rh5AG274400 Rh5AG344200 Rh5BG276400 Rh5BG279300 Rh5BG279400 Rh5CG308900 Rh5CG311400 Rh5CG311600 Rh5DG284900 Rh5DG287500
rosa_wichuraiana	Rw2G032480 Rw5G025510 Rw5G025770 Rw5G025780 Rw5G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	100
AccB7I	CCANNNNNTGG	1 cut(s)	70
AciI	CCGC	1 cut(s)	355
AclWI	GGATC	2 cut(s)	28, 123
AcsI	RAATTY	1 cut(s)	277
AcuI	CTGAAG	1 cut(s)	183
AcyI	GRCGYC	2 cut(s)	97, 191
AfiI	CCNNNNNNNGG	3 cut(s)	70, 100, 200
AgsI	TTSAA	1 cut(s)	277
AluBI	AGCT	4 cut(s)	167, 316, 340, 386
AluI	AGCT	4 cut(s)	167, 316, 340, 386
Alw26I	GTCTC	2 cut(s)	137, 372
AlwI	GGATC	2 cut(s)	28, 123
Ama87I	CYCGRG	1 cut(s)	122
ApoI	RAATTY	1 cut(s)	277
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
AsuHPI	GGTGA	1 cut(s)	347
AvaI	CYCGRG	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	194
BccI	CCATC	1 cut(s)	295
BcoDI	GTCTC	2 cut(s)	137, 372
BfmI	CTRYAG	1 cut(s)	210
BmeT110I	CYCGRG	1 cut(s)	122
BpiI	GAAGAC	1 cut(s)	194
BsaHI	GRCGYC	2 cut(s)	97, 191
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 100, 200
Bse1I	ACTGG	1 cut(s)	324
Bse3DI	GCAATG	1 cut(s)	81
BseGI	GGATG	2 cut(s)	306, 308
BseLI	CCNNNNNNNGG	3 cut(s)	70, 100, 200
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	324
BseRI	GAGGAG	1 cut(s)	197
BsiHKCI	CYCGRG	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	50
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	3 cut(s)	70, 100, 200
BsmAI	GTCTC	2 cut(s)	137, 372
BsmFI	GGGAC	1 cut(s)	75
BsmI	GAATGC	1 cut(s)	350
BsoBI	CYCGRG	1 cut(s)	122
Bsp143I	GATC	3 cut(s)	33, 115, 283
BspACI	CCGC	1 cut(s)	355
BspCNI	CTCAG	1 cut(s)	133
BspPI	GGATC	2 cut(s)	28, 123
BsrDI	GCAATG	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	324
BssMI	GATC	3 cut(s)	33, 115, 283
BssNI	GRCGYC	2 cut(s)	97, 191
Bst4CI	ACNGT	2 cut(s)	148, 207
Bst6I	CTCTTC	1 cut(s)	174
BstACI	GRCGYC	2 cut(s)	97, 191
BstDEI	CTNAG	1 cut(s)	141
BstF5I	GGATG	2 cut(s)	306, 308
BstKTI	GATC	3 cut(s)	36, 118, 286
BstMAI	GTCTC	2 cut(s)	137, 372
BstMBI	GATC	3 cut(s)	33, 115, 283
BstSFI	CTRYAG	1 cut(s)	210
BstV2I	GAAGAC	1 cut(s)	194
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
BtsCI	GGATG	2 cut(s)	306, 308
CseI	GACGC	1 cut(s)	199
CviJI	RGCY	7 cut(s)	104, 167, 218, 254, 316, 340, 386
CviKI_1	RGCY	7 cut(s)	104, 167, 218, 254, 316, 340, 386
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	3 cut(s)	35, 117, 285
DpnII	GATC	3 cut(s)	33, 115, 283
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	122
FaiI	YATR	2 cut(s)	170, 383
FaqI	GGGAC	1 cut(s)	75
FokI	GGATG	2 cut(s)	295, 313
HapII	CCGG	1 cut(s)	50
HgaI	GACGC	1 cut(s)	199
Hin1I	GRCGYC	2 cut(s)	97, 191
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	1 cut(s)	245
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	3 cut(s)	113, 122, 287
Hpy8I	GTNNAC	1 cut(s)	159
Hpy99I	CGWCG	1 cut(s)	99
HpyCH4III	ACNGT	2 cut(s)	148, 207
HpyCH4IV	ACGT	2 cut(s)	88, 97
HpyCH4V	TGCA	1 cut(s)	233
HpyF3I	CTNAG	1 cut(s)	141
HpySE526I	ACGT	2 cut(s)	88, 97
Hsp92I	GRCGYC	2 cut(s)	97, 191
Kzo9I	GATC	3 cut(s)	33, 115, 283
LmnI	GCTCC	1 cut(s)	66
LpnPI	CCDG	9 cut(s)	56, 63, 86, 207, 240, 272, 318, 337, 354
MaeII	ACGT	2 cut(s)	88, 97
MaeIII	GTNAC	1 cut(s)	81
MalI	GATC	3 cut(s)	35, 117, 285
MboI	GATC	3 cut(s)	33, 115, 283
MboII	GAAGA	3 cut(s)	110, 191, 199
MflI	RGATCY	1 cut(s)	115
MluCI	AATT	1 cut(s)	277
MlyI	GAGTC	1 cut(s)	254
MnlI	CCTC	3 cut(s)	7, 175, 365
MspI	CCGG	1 cut(s)	50
Mva1269I	GAATGC	1 cut(s)	350
NdeII	GATC	3 cut(s)	33, 115, 283
PcsI	WCGNNNNNNNCGW	1 cut(s)	94
PctI	GAATGC	1 cut(s)	350
PflMI	CCANNNNNTGG	1 cut(s)	70
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	115
Sau3AI	GATC	3 cut(s)	33, 115, 283
SchI	GAGTC	1 cut(s)	254
SfcI	CTRYAG	1 cut(s)	210
Sse9I	AATT	1 cut(s)	277
SsiI	CCGC	1 cut(s)	355
SspI	AATATT	1 cut(s)	109
TaaI	ACNGT	2 cut(s)	148, 207
TaiI	ACGT	2 cut(s)	91, 100
TasI	AATT	1 cut(s)	277
TspDTI	ATGAA	2 cut(s)	146, 308
TspGWI	ACGGA	1 cut(s)	318
Van91I	CCANNNNNTGG	1 cut(s)	70
XapI	RAATTY	1 cut(s)	277
ZraI	GACGTC	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.