Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008620.1

Orthogroup ID

OG0001141

Physical Location & Seq

Genomic Coordinates Reverse (-)

171 .. 1327

Gene Structure 1157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008620.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atgtttcgtatcagcggctcgcgttcctcggcgacaccgttcttgacctcgctcaacgagaagttcgcacgtgtggctgtgagacatgggctttataactaccttcgctgcactgcaactcgtgctctcgatgttcaggttagggagtttactgaagctataagacgagaagaggagaagacgcctgtatttggacggtctgtagaagcccctaaagttcttgcagatattgtggagtctgtggctggtgctatttattttgacttgaattttgatctggaactactttggatgaaatttaagcaagttttggagcctatagttactcttgaagagttgcagcaacaaactcatcctgtgacagagttgccgcaacaacctcatcctgtgacagagttgcagcaacaacctcgtcctgtgacagagttgcagcaacaacctcgtcctgtgacagagttgcatcaactttgccagaagcaggggaagaatgtcagtatcgagtacgggagaggtaagatgaagagtaatattgatgggaagtgtgttgccttgggttcggctgaacagaaaggaagtgctatagtcaatgctgctgagatggctctgaggaagttgatttatgatgcgctggttgaagttattgctgaaatcgatcagccattttctgttaaaaaagcaaaagatgagttgcataagatttgtgtcgagaagaggtggcctcaaccaatttacacttatgaatctttacttaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM Ribonuclease_3 dsrm

Protein Analysis

251

Amino Acids

28.56

Weight (kDa)

6.97

Isoelectric Point (pI)

59.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20420
fragaria_vesca	FvH4_3g23250
malus_domestica	MD03G1196200.v1.1 MD11G1212500.v1.1
prunus_persica	Prupe.4G219200_v2.0.a1 Prupe.4G219200_v2.0.a1 Prupe.4G219400_v2.0.a1 Prupe.4G219400_v2.0.a1
pyrus_communis	pycom03g14830 pycom11g18750
rosa_chinensis	RchiOBHm_Chr5g0040511 RchiOBHm_Chr5g0040931 RchiOBHm_Chr5g0040941
rosa_laevigata	RLG00000033986 RLG00000034014 RLG00000034016 RLG00000034026
rosa_multiflora	Rmu_co8051550.1_g000001 Rmu_co8392905.1_g000001 Rmu_sc0002475.1_g000019 Rmu_sc0002848.1_g000007 Rmu_sc0006651.1_g000007 Rmu_sc0006651.1_g000008 Rmu_sc0008620.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039580 Rroxscaffold_1G00039750 Rroxscaffold_1G00039760 Rroxscaffold_1G00040130 Rroxscaffold_1G00040850
rosa_rugosa	Rorug02G0350900 Rorug02G0350900 Rorug02G0351000 Rorug05G0185500 Rorug05G0188700 Rorug05G0188900 Rorug05G0188900
rosa_samantha	Rh2AG398700 Rh2BG409100 Rh2CG385500 Rh2CG540800 Rh2DG418900 Rh5AG272400 Rh5AG274300 Rh5AG274400 Rh5AG344200 Rh5BG276400 Rh5BG279300 Rh5BG279400 Rh5CG308900 Rh5CG311400 Rh5CG311600 Rh5DG284900 Rh5DG287500
rosa_wichuraiana	Rw2G032480 Rw5G025510 Rw5G025770 Rw5G025780 Rw5G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	96
AccII	CGCG	1 cut(s)	22
AciI	CCGC	2 cut(s)	15, 371
AcsI	RAATTY	2 cut(s)	268, 296
AcuI	CTGAAG	1 cut(s)	174
AcvI	CACGTG	1 cut(s)	71
AcyI	GRCGYC	1 cut(s)	182
AfaI	GTAC	1 cut(s)	503
AfiI	CCNNNNNNNGG	2 cut(s)	191, 478
AflIII	ACRYGT	1 cut(s)	70
AgsI	TTSAA	3 cut(s)	268, 332, 635
AluBI	AGCT	1 cut(s)	158
AluI	AGCT	1 cut(s)	158
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	76
AoxI	GGCC	1 cut(s)	716
ApeKI	GCWGC	5 cut(s)	108, 340, 400, 430, 590
ApoI	RAATTY	2 cut(s)	268, 296
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
AspLEI	GCGC	1 cut(s)	628
BauI	CACGAG	1 cut(s)	120
BbrPI	CACGTG	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	127
BbvI	GCAGC	5 cut(s)	95, 352, 412, 442, 577
BccI	CCATC	2 cut(s)	527, 592
BcgI	CGANNNNNNTGC	4 cut(s)	392, 422, 426, 456
BcoDI	GTCTC	1 cut(s)	76
BfmI	CTRYAG	3 cut(s)	201, 318, 579
BisI	GCNGC	7 cut(s)	16, 109, 341, 371, 401, 431, 591
BlsI	GCNGC	7 cut(s)	17, 110, 342, 372, 402, 432, 592
BmiI	GGNNCC	1 cut(s)	315
BmsI	GCATC	2 cut(s)	469, 613
BpiI	GAAGAC	1 cut(s)	185
BplI	GAGNNNNNCTC	2 cut(s)	703, 735
Bsa29I	ATCGAT	1 cut(s)	651
BsaAI	YACGTR	1 cut(s)	71
BsaHI	GRCGYC	1 cut(s)	182
BsaJI	CCNNGG	2 cut(s)	27, 549
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 478
BseCI	ATCGAT	1 cut(s)	651
BseDI	CCNNGG	2 cut(s)	27, 549
BseGI	GGATG	3 cut(s)	297, 352, 382
BseLI	CCNNNNNNNGG	2 cut(s)	191, 478
BseMII	CTCAG	2 cut(s)	585, 596
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	5 cut(s)	95, 352, 412, 442, 577
BsgI	GTGCAG	1 cut(s)	94
Bsh1236I	CGCG	1 cut(s)	22
BshFI	GGCC	1 cut(s)	718
BshVI	ATCGAT	1 cut(s)	651
BsiHKAI	GWGCWC	1 cut(s)	127
BslI	CCNNNNNNNGG	2 cut(s)	191, 478
BsmAI	GTCTC	1 cut(s)	76
BsnI	GGCC	1 cut(s)	718
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	2 cut(s)	274, 652
BspACI	CCGC	2 cut(s)	15, 371
BspANI	GGCC	1 cut(s)	718
BspCNI	CTCAG	2 cut(s)	586, 597
BspDI	ATCGAT	1 cut(s)	651
BspFNI	CGCG	1 cut(s)	22
BspLI	GGNNCC	1 cut(s)	315
BssECI	CCNNGG	2 cut(s)	27, 549
BssMI	GATC	2 cut(s)	274, 652
BssNI	GRCGYC	1 cut(s)	182
BssSI	CACGAG	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	549
Bst2BI	CACGAG	1 cut(s)	120
Bst4CI	ACNGT	2 cut(s)	39, 198
Bst6I	CTCTTC	4 cut(s)	165, 327, 515, 704
BstACI	GRCGYC	1 cut(s)	182
BstAPI	GCANNNNNTGC	1 cut(s)	122
BstBAI	YACGTR	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	20
BstDEI	CTNAG	2 cut(s)	594, 605
BstF5I	GGATG	3 cut(s)	297, 352, 382
BstFNI	CGCG	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	628
BstKTI	GATC	2 cut(s)	277, 655
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	2 cut(s)	274, 652
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 122, 599
BstSFI	CTRYAG	3 cut(s)	201, 318, 579
BstUI	CGCG	1 cut(s)	22
BstV1I	GCAGC	5 cut(s)	95, 352, 412, 442, 577
BstV2I	GAAGAC	1 cut(s)	185
Bsu15I	ATCGAT	1 cut(s)	651
BsuRI	GGCC	1 cut(s)	718
BsuTUI	ATCGAT	1 cut(s)	651
BtsCI	GGATG	3 cut(s)	297, 352, 382
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	20
CfoI	GCGC	1 cut(s)	628
ClaI	ATCGAT	1 cut(s)	651
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	502
CviAII	CATG	1 cut(s)	86
CviQI	GTAC	1 cut(s)	502
DdeI	CTNAG	2 cut(s)	594, 605
DpnI	GATC	2 cut(s)	276, 654
DpnII	GATC	2 cut(s)	274, 652
Eam1104I	CTCTTC	4 cut(s)	165, 327, 515, 704
EarI	CTCTTC	4 cut(s)	165, 327, 515, 704
Eco130I	CCWWGG	1 cut(s)	549
Eco57I	CTGAAG	1 cut(s)	174
Eco72I	CACGTG	1 cut(s)	71
EcoT14I	CCWWGG	1 cut(s)	549
ErhI	CCWWGG	1 cut(s)	549
FaeI	CATG	1 cut(s)	89
FaiI	YATR	8 cut(s)	87, 96, 161, 320, 581, 621, 693, 738
FatI	CATG	1 cut(s)	85
Fnu4HI	GCNGC	7 cut(s)	16, 109, 341, 371, 401, 431, 591
FokI	GGATG	3 cut(s)	304, 339, 369
Fsp4HI	GCNGC	7 cut(s)	16, 109, 341, 371, 401, 431, 591
GlaI	GCGC	1 cut(s)	627
GluI	GCNGC	7 cut(s)	16, 109, 341, 371, 401, 431, 591
HaeIII	GGCC	1 cut(s)	718
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	1 cut(s)	628
Hin1I	GRCGYC	1 cut(s)	182
Hin1II	CATG	1 cut(s)	89
Hin6I	GCGC	1 cut(s)	626
HinP1I	GCGC	1 cut(s)	626
HinfI	GANTC	2 cut(s)	236, 740
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188I	TCNGA	1 cut(s)	606
Hpy188III	TCNNGA	5 cut(s)	43, 128, 278, 329, 706
Hpy8I	GTNNAC	1 cut(s)	150
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	2 cut(s)	39, 198
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	8 cut(s)	111, 116, 224, 340, 400, 430, 460, 691
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 122, 599
HpyF3I	CTNAG	2 cut(s)	594, 605
HpySE526I	ACGT	1 cut(s)	70
Hsp92I	GRCGYC	1 cut(s)	182
Hsp92II	CATG	1 cut(s)	89
HspAI	GCGC	1 cut(s)	626
Kzo9I	GATC	2 cut(s)	274, 652
LmnI	GCTCC	1 cut(s)	313
Lsp1109I	GCAGC	5 cut(s)	95, 352, 412, 442, 577
LweI	GCATC	2 cut(s)	469, 613
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	5 cut(s)	322, 358, 388, 418, 448
MalI	GATC	2 cut(s)	276, 654
MboI	GATC	2 cut(s)	274, 652
MboII	GAAGA	6 cut(s)	182, 190, 344, 496, 532, 721
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	4 cut(s)	268, 296, 726, 751
MlyI	GAGTC	1 cut(s)	245
MseI	TTAA	3 cut(s)	300, 669, 750
MspA1I	CMGCKG	1 cut(s)	15
MvnI	CGCG	1 cut(s)	22
MwoI	GCNNNNNNNGC	3 cut(s)	74, 122, 599
NdeII	GATC	2 cut(s)	274, 652
NlaIII	CATG	1 cut(s)	89
NlaIV	GGNNCC	1 cut(s)	315
NmeAIII	GCCGAG	1 cut(s)	8
NmuCI	GTSAC	4 cut(s)	358, 388, 418, 448
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	740
PkrI	GCNGC	7 cut(s)	17, 110, 342, 372, 402, 432, 592
PleI	GAGTC	1 cut(s)	244
PmaCI	CACGTG	1 cut(s)	71
PmlI	CACGTG	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	244
Ppu21I	YACGTR	1 cut(s)	71
PsiI	TTATAA	1 cut(s)	96
PspCI	CACGTG	1 cut(s)	71
PspN4I	GGNNCC	1 cut(s)	315
RsaI	GTAC	1 cut(s)	503
RsaNI	GTAC	1 cut(s)	502
SaqAI	TTAA	3 cut(s)	300, 669, 750
SatI	GCNGC	7 cut(s)	16, 109, 341, 371, 401, 431, 591
Sau3AI	GATC	2 cut(s)	274, 652
SchI	GAGTC	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	127
SfaNI	GCATC	2 cut(s)	469, 613
SfcI	CTRYAG	3 cut(s)	201, 318, 579
Sse9I	AATT	4 cut(s)	268, 296, 726, 751
SsiI	CCGC	2 cut(s)	15, 371
SspI	AATATT	1 cut(s)	529
StyI	CCWWGG	1 cut(s)	549
TaaI	ACNGT	2 cut(s)	39, 198
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	4 cut(s)	129, 498, 651, 705
TasI	AATT	4 cut(s)	268, 296, 726, 751
TauI	GCSGC	2 cut(s)	18, 373
TfiI	GAWTC	1 cut(s)	740
Tru1I	TTAA	3 cut(s)	300, 669, 750
Tru9I	TTAA	3 cut(s)	300, 669, 750
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	4 cut(s)	358, 388, 418, 448
TseI	GCWGC	5 cut(s)	108, 340, 400, 430, 590
Tsp45I	GTSAC	4 cut(s)	358, 388, 418, 448
TspDTI	ATGAA	3 cut(s)	308, 533, 753
TspRI	CASTG	1 cut(s)	118
XapI	RAATTY	2 cut(s)	268, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.