Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001141

Physical Location & Seq

Genomic Coordinates Reverse (-)

36317584 .. 36325873

Gene Structure 8290 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG272400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1479 bp

ATGTCTTCAGGGAAGCTAATGTGGTTGCAGATCATTTTGCTAGCTCAGGACATGTACAAAGATACTCTCAAAGTTGTATTTGGTTTAACAATGTTCCTACGGATTCTCCAAAACTTTTCCACCAGAATCTTTTGCAAGATGAACCCCCGATCGAACGAGAAAATTACCACCGTGGCACCACTCCGCCTGCCGGAAATGAAAGAATACGTGGACGCCGTGGAGCGGATCCTAGACTATGACTTCAAGAACAAGAGGCTTCTAGAGGAAGCTCTCATCCACCCCTCCTTCCGAATAAGCGACGCCGTTTCGTATCAGCGGCTCGCGTTCCTCGGCGACACCGTTCTTGACCTCGCTGTAAGTAAAGACCTCTTCATTGCTTACCCTGTAATTGACCAAGGCGACCTCACTCGGCTACGCTCCGCTAACGTCAGCAACGAGAAGTTCGCACGTGTGGCTGTGAGACATGGGCTTTATAACTACCTTCGAAGCACTGCAACTTGTGCTCTCGATGTTCAGGTTAGGGAGTTTACTGAAGCTATAAGACGAGAAGAGGAGAAGACACCTGTATTTGGACGGTCTGTAGAAGCCCCTAAAGTTCTTGCAGATATTGTGGAGTCTGTGGCTGGTGCTATTTATTTTGACTTGAATTTTGATCTGGAACTACTTTGGATGAAATTTAAGCATGTTTTGGAGCCTATAGTTACTCTTGAAGAGTTGCAGCAACAACCTCATCCTGTGCAACAACCTCATCCTGTGACAGAGCAGTTGCAGCAACAAGCTCGTCCTGTGACAGAGTTGCAGCAACAACCTTATCCTGTTCAACAACCTCATCCTGTGACAGAGTTGCAGCAACAAGCTCGTCCTGTGACAGAGTTGCAGCAACAATCTTATCCTGTTCAACAACCTCATCCTGTGACAGAGTTGCATCAACTTTGCCAGAAGCAGGGGAAGAATGTCAGTATCGAGTACGGGAGACGTAAGATGAAGAGTAATATTGATGGGAAGTGTGTTGCCTTGGGTTCGGCTGAACAGAAAGGAAGTGCTAAGGTCAATGCTGCTGAGATGGCTCTGAGGAAGTTGATTTATGATGCGCTGGTTGAAGTTATTGCTGAAATCGATCAGCCATTTTCTGTTAAAAAAGCAAAAGATGAGTTGCATAAGACTTGTGCCGAGAAGAGGTGGCCTCAACCAATTTACACCATTGAGCATGAAGAAGGTCCTCCACATGATAAGATGTTTAAATCGATGGTAACTATAGGTCTGGTATATATGATTGGAGATGCAAAGTCAACAGTAAAAGATGCGGAGAACTCTGCAGCTTTTCTGATGATCCGCTCATTGCAAGACCCTAAAAATCGCGTGGAACCACTCTCCTCAAAAGCAGGTGAGGAAATAATCAATATCTCCCCTTCTTCAGCCGAGACCAATCCCACCAAAAACGTTATCCGAGGTCTCCATTACAACTATGGAAAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM Ribonuclease_3 dsrm

Protein Analysis

492

Amino Acids

56.01

Weight (kDa)

7.2

Isoelectric Point (pI)

61.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonucleas_3_3	PF14622	83 - 215	6.3e-18	Ribonuclease-III-like
Ribonuclease_3	PF00636	105 - 214	1.2e-21	Ribonuclease III domain
DND1_DSRM	PF14709	380 - 447	4.5e-08	double strand RNA binding domain from DEAD END PROTEIN 1
dsrm	PF00035	381 - 447	2.3e-13	Double-stranded RNA binding motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20420
fragaria_vesca	FvH4_3g23250
malus_domestica	MD03G1196200.v1.1 MD11G1212500.v1.1
prunus_persica	Prupe.4G219200_v2.0.a1 Prupe.4G219200_v2.0.a1 Prupe.4G219400_v2.0.a1 Prupe.4G219400_v2.0.a1
pyrus_communis	pycom03g14830 pycom11g18750
rosa_chinensis	RchiOBHm_Chr5g0040511 RchiOBHm_Chr5g0040931 RchiOBHm_Chr5g0040941
rosa_laevigata	RLG00000033986 RLG00000034014 RLG00000034016 RLG00000034026
rosa_multiflora	Rmu_co8051550.1_g000001 Rmu_co8392905.1_g000001 Rmu_sc0002475.1_g000019 Rmu_sc0002848.1_g000007 Rmu_sc0006651.1_g000007 Rmu_sc0006651.1_g000008 Rmu_sc0008620.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039580 Rroxscaffold_1G00039750 Rroxscaffold_1G00039760 Rroxscaffold_1G00040130 Rroxscaffold_1G00040850
rosa_rugosa	Rorug02G0350900 Rorug02G0350900 Rorug02G0351000 Rorug05G0185500 Rorug05G0188700 Rorug05G0188900 Rorug05G0188900
rosa_samantha	Rh2AG398700 Rh2BG409100 Rh2CG385500 Rh2CG540800 Rh2DG418900 Rh5AG272400 Rh5AG274300 Rh5AG274400 Rh5AG344200 Rh5BG276400 Rh5BG279300 Rh5BG279400 Rh5CG308900 Rh5CG311400 Rh5CG311600 Rh5DG284900 Rh5DG287500
rosa_wichuraiana	Rw2G032480 Rw5G025510 Rw5G025770 Rw5G025780 Rw5G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	474
AarI	CACCTGC	1 cut(s)	1373
Acc36I	ACCTGC	1 cut(s)	1373
AccB1I	GGYRCC	1 cut(s)	175
AccBSI	CCGCTC	2 cut(s)	223, 1335
AccII	CGCG	2 cut(s)	323, 1359
AciI	CCGC	6 cut(s)	184, 223, 316, 420, 1304, 1333
AclI	AACGTT	1 cut(s)	1440
AclWI	GGATC	3 cut(s)	220, 233, 1324
AcsI	RAATTY	2 cut(s)	646, 674
AcuI	CTGAAG	2 cut(s)	552, 1398
AcvI	CACGTG	1 cut(s)	449
AcyI	GRCGYC	2 cut(s)	213, 300
AfaI	GTAC	2 cut(s)	56, 968
AfiI	CCNNNNNNNGG	5 cut(s)	190, 222, 569, 943, 1176
AflIII	ACRYGT	2 cut(s)	51, 448
AgsI	TTSAA	6 cut(s)	244, 646, 710, 821, 899, 1100
AluBI	AGCT	7 cut(s)	16, 44, 269, 536, 779, 857, 1319
AluI	AGCT	7 cut(s)	16, 44, 269, 536, 779, 857, 1319
Alw21I	GWGCWC	1 cut(s)	505
Alw26I	GTCTC	4 cut(s)	454, 967, 1415, 1457
AlwI	GGATC	3 cut(s)	220, 233, 1324
AoxI	GGCC	1 cut(s)	1181
ApeKI	GCWGC	7 cut(s)	718, 769, 799, 847, 877, 1055, 1316
ApoI	RAATTY	2 cut(s)	646, 674
ArsI	GACNNNNNNTTYG	2 cut(s)	632, 664
AspLEI	GCGC	1 cut(s)	1093
AspS9I	GGNCC	1 cut(s)	1217
AsuHPI	GGTGA	1 cut(s)	1397
AsuII	TTCGAA	1 cut(s)	484
AsuNHI	GCTAGC	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	1217
BamHI	GGATCC	1 cut(s)	225
BanI	GGYRCC	1 cut(s)	175
BbrPI	CACGTG	1 cut(s)	449
BbsI	GAAGAC	1 cut(s)	563
Bbv12I	GWGCWC	1 cut(s)	505
BbvI	GCAGC	7 cut(s)	730, 781, 811, 859, 889, 1042, 1328
BccI	CCATC	3 cut(s)	992, 1057, 1240
BceAI	ACGGC	2 cut(s)	200, 287
BcgI	CGANNNNNNTGC	4 cut(s)	761, 795, 839, 873
BcoDI	GTCTC	4 cut(s)	454, 967, 1415, 1457
BfaI	CTAG	3 cut(s)	41, 230, 260
BfmI	CTRYAG	4 cut(s)	579, 696, 1254, 1314
BfuAI	ACCTGC	1 cut(s)	1373
BisI	GCNGC	8 cut(s)	317, 719, 770, 800, 848, 878, 1056, 1317
BlsI	GCNGC	8 cut(s)	318, 720, 771, 801, 849, 879, 1057, 1318
Bme18I	GGWCC	1 cut(s)	1217
BmgT120I	GGNCC	1 cut(s)	1217
BmiI	GGNNCC	4 cut(s)	177, 227, 693, 1365
BmsI	GCATC	4 cut(s)	934, 1078, 1270, 1291
BmtI	GCTAGC	1 cut(s)	44
BpiI	GAAGAC	1 cut(s)	563
BplI	GAGNNNNNCTC	2 cut(s)	1168, 1200
Bpu10I	CCTNAGC	2 cut(s)	45, 1044
Bpu14I	TTCGAA	1 cut(s)	484
Bsa29I	ATCGAT	2 cut(s)	1116, 1244
BsaAI	YACGTR	2 cut(s)	208, 449
BsaHI	GRCGYC	2 cut(s)	213, 300
BsaI	GGTCTC	2 cut(s)	1415, 1457
BsaJI	CCNNGG	6 cut(s)	171, 216, 328, 394, 1014, 1447
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bsc4I	CCNNNNNNNGG	5 cut(s)	190, 222, 569, 943, 1176
Bse3DI	GCAATG	2 cut(s)	372, 1337
BseCI	ATCGAT	2 cut(s)	1116, 1244
BseDI	CCNNGG	6 cut(s)	171, 216, 328, 394, 1014, 1447
BseGI	GGATG	6 cut(s)	273, 675, 730, 748, 829, 907
BseLI	CCNNNNNNNGG	5 cut(s)	190, 222, 569, 943, 1176
BseMI	GCAATG	2 cut(s)	372, 1337
BseMII	CTCAG	3 cut(s)	59, 1050, 1061
BseRI	GAGGAG	2 cut(s)	566, 1363
BseXI	GCAGC	7 cut(s)	730, 781, 811, 859, 889, 1042, 1328
Bsh1236I	CGCG	2 cut(s)	323, 1359
Bsh1285I	CGRYCG	1 cut(s)	152
BshFI	GGCC	1 cut(s)	1183
BshNI	GGYRCC	1 cut(s)	175
BshVI	ATCGAT	2 cut(s)	1116, 1244
BsiEI	CGRYCG	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	505
BsiSI	CCGG	1 cut(s)	191
BslI	CCNNNNNNNGG	5 cut(s)	190, 222, 569, 943, 1176
BsmAI	GTCTC	4 cut(s)	454, 967, 1415, 1457
BsmBI	CGTCTC	1 cut(s)	967
BsnI	GGCC	1 cut(s)	1183
Bso31I	GGTCTC	2 cut(s)	1415, 1457
Bsp119I	TTCGAA	1 cut(s)	484
Bsp1286I	GDGCHC	1 cut(s)	505
Bsp1407I	TGTACA	1 cut(s)	54
Bsp143I	GATC	6 cut(s)	30, 149, 225, 652, 1117, 1329
BspACI	CCGC	6 cut(s)	184, 223, 316, 420, 1304, 1333
BspANI	GGCC	1 cut(s)	1183
BspCNI	CTCAG	3 cut(s)	58, 1051, 1062
BspDI	ATCGAT	2 cut(s)	1116, 1244
BspFNI	CGCG	2 cut(s)	323, 1359
BspLI	GGNNCC	4 cut(s)	177, 227, 693, 1365
BspMAI	CTGCAG	1 cut(s)	1318
BspMI	ACCTGC	1 cut(s)	1373
BspOI	GCTAGC	1 cut(s)	44
BspPI	GGATC	3 cut(s)	220, 233, 1324
BspT104I	TTCGAA	1 cut(s)	484
BspT107I	GGYRCC	1 cut(s)	175
BspTNI	GGTCTC	2 cut(s)	1415, 1457
BsrBI	CCGCTC	2 cut(s)	223, 1335
BsrDI	GCAATG	2 cut(s)	372, 1337
BsrGI	TGTACA	1 cut(s)	54
BssECI	CCNNGG	6 cut(s)	171, 216, 328, 394, 1014, 1447
BssMI	GATC	6 cut(s)	30, 149, 225, 652, 1117, 1329
BssNI	GRCGYC	2 cut(s)	213, 300
BssT1I	CCWWGG	2 cut(s)	394, 1014
Bst4CI	ACNGT	4 cut(s)	172, 340, 576, 1294
Bst6I	CTCTTC	5 cut(s)	374, 543, 705, 980, 1169
BstACI	GRCGYC	2 cut(s)	213, 300
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstAUI	TGTACA	1 cut(s)	54
BstBAI	YACGTR	2 cut(s)	208, 449
BstBI	TTCGAA	1 cut(s)	484
BstC8I	GCNNGC	3 cut(s)	42, 188, 321
BstDEI	CTNAG	4 cut(s)	45, 1044, 1059, 1070
BstDSI	CCRYGG	2 cut(s)	171, 216
BstF5I	GGATG	6 cut(s)	273, 675, 730, 748, 829, 907
BstFNI	CGCG	2 cut(s)	323, 1359
BstHHI	GCGC	1 cut(s)	1093
BstKTI	GATC	6 cut(s)	33, 152, 228, 655, 1120, 1332
BstMAI	GTCTC	4 cut(s)	454, 967, 1415, 1457
BstMBI	GATC	6 cut(s)	30, 149, 225, 652, 1117, 1329
BstMCI	CGRYCG	1 cut(s)	152
BstMWI	GCNNNNNNNGC	4 cut(s)	452, 500, 769, 1064
BstNSI	RCATGY	2 cut(s)	55, 686
BstSFI	CTRYAG	4 cut(s)	579, 696, 1254, 1314
BstUI	CGCG	2 cut(s)	323, 1359
BstV1I	GCAGC	7 cut(s)	730, 781, 811, 859, 889, 1042, 1328
BstV2I	GAAGAC	1 cut(s)	563
BstX2I	RGATCY	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	225
Bsu15I	ATCGAT	2 cut(s)	1116, 1244
BsuRI	GGCC	1 cut(s)	1183
BsuTUI	ATCGAT	2 cut(s)	1116, 1244
BtgI	CCRYGG	2 cut(s)	171, 216
BtsCI	GGATG	6 cut(s)	273, 675, 730, 748, 829, 907
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	1 cut(s)	489
BveI	ACCTGC	1 cut(s)	1373
Cac8I	GCNNGC	3 cut(s)	42, 188, 321
CfoI	GCGC	1 cut(s)	1093
Cfr13I	GGNCC	1 cut(s)	1217
ClaI	ATCGAT	2 cut(s)	1116, 1244
CseI	GACGC	2 cut(s)	221, 308
Csp6I	GTAC	2 cut(s)	55, 967
CviAII	CATG	5 cut(s)	52, 464, 683, 1208, 1226
CviQI	GTAC	2 cut(s)	55, 967
DdeI	CTNAG	4 cut(s)	45, 1044, 1059, 1070
DpnI	GATC	6 cut(s)	32, 151, 227, 654, 1119, 1331
DpnII	GATC	6 cut(s)	30, 149, 225, 652, 1117, 1329
DraI	TTTAAA	1 cut(s)	1240
Eam1104I	CTCTTC	5 cut(s)	374, 543, 705, 980, 1169
EarI	CTCTTC	5 cut(s)	374, 543, 705, 980, 1169
EciI	GGCGGA	1 cut(s)	173
Eco130I	CCWWGG	2 cut(s)	394, 1014
Eco31I	GGTCTC	2 cut(s)	1415, 1457
Eco47I	GGWCC	1 cut(s)	1217
Eco57I	CTGAAG	2 cut(s)	552, 1398
Eco72I	CACGTG	1 cut(s)	449
EcoO109I	RGGNCCY	1 cut(s)	1217
EcoT14I	CCWWGG	2 cut(s)	394, 1014
ErhI	CCWWGG	2 cut(s)	394, 1014
Esp3I	CGTCTC	1 cut(s)	967
FaeI	CATG	5 cut(s)	55, 467, 686, 1211, 1229
FatI	CATG	5 cut(s)	51, 463, 682, 1207, 1225
Fnu4HI	GCNGC	8 cut(s)	317, 719, 770, 800, 848, 878, 1056, 1317
FokI	GGATG	6 cut(s)	260, 682, 717, 735, 816, 894
Fsp4HI	GCNGC	8 cut(s)	317, 719, 770, 800, 848, 878, 1056, 1317
FspBI	CTAG	3 cut(s)	41, 230, 260
GlaI	GCGC	1 cut(s)	1092
GluI	GCNGC	8 cut(s)	317, 719, 770, 800, 848, 878, 1056, 1317
HaeIII	GGCC	1 cut(s)	1183
HapII	CCGG	1 cut(s)	191
HgaI	GACGC	2 cut(s)	221, 308
HhaI	GCGC	1 cut(s)	1093
Hin1I	GRCGYC	2 cut(s)	213, 300
Hin1II	CATG	5 cut(s)	55, 467, 686, 1211, 1229
Hin6I	GCGC	1 cut(s)	1091
HinP1I	GCGC	1 cut(s)	1091
HincII	GTYRAC	1 cut(s)	1290
HindII	GTYRAC	1 cut(s)	1290
HinfI	GANTC	3 cut(s)	103, 126, 614
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	1 cut(s)	1397
Hpy166II	GTNNAC	3 cut(s)	211, 528, 1290
Hpy188I	TCNGA	4 cut(s)	290, 1071, 1326, 1448
Hpy188III	TCNNGA	7 cut(s)	47, 244, 260, 344, 506, 656, 707
Hpy8I	GTNNAC	3 cut(s)	211, 528, 1290
Hpy99I	CGWCG	1 cut(s)	302
HpyAV	CCTTC	4 cut(s)	295, 491, 1208, 1419
HpyCH4III	ACNGT	4 cut(s)	172, 340, 576, 1294
HpyCH4IV	ACGT	5 cut(s)	207, 426, 448, 976, 1440
HpyF10VI	GCNNNNNNNGC	4 cut(s)	452, 500, 769, 1064
HpyF3I	CTNAG	4 cut(s)	45, 1044, 1059, 1070
HpySE526I	ACGT	5 cut(s)	207, 426, 448, 976, 1440
Hsp92I	GRCGYC	2 cut(s)	213, 300
Hsp92II	CATG	5 cut(s)	55, 467, 686, 1211, 1229
HspAI	GCGC	1 cut(s)	1091
Kzo9I	GATC	6 cut(s)	30, 149, 225, 652, 1117, 1329
LmnI	GCTCC	3 cut(s)	220, 422, 691
Lsp1109I	GCAGC	7 cut(s)	730, 781, 811, 859, 889, 1042, 1328
LweI	GCATC	4 cut(s)	934, 1078, 1270, 1291
MaeI	CTAG	3 cut(s)	41, 230, 260
MaeII	ACGT	5 cut(s)	207, 426, 448, 976, 1440
MaeIII	GTNAC	7 cut(s)	700, 754, 787, 835, 865, 913, 1249
MalI	GATC	6 cut(s)	32, 151, 227, 654, 1119, 1331
MbiI	CCGCTC	2 cut(s)	223, 1335
MboI	GATC	6 cut(s)	30, 149, 225, 652, 1117, 1329
MboII	GAAGA	9 cut(s)	361, 560, 568, 722, 961, 997, 1186, 1223, 1404
MflI	RGATCY	1 cut(s)	225
MhlI	GDGCHC	1 cut(s)	505
MluCI	AATT	5 cut(s)	162, 387, 646, 674, 1191
MlyI	GAGTC	1 cut(s)	623
MseI	TTAA	4 cut(s)	86, 678, 1134, 1239
MspA1I	CMGCKG	1 cut(s)	316
MspI	CCGG	1 cut(s)	191
MvnI	CGCG	2 cut(s)	323, 1359
MwoI	GCNNNNNNNGC	4 cut(s)	452, 500, 769, 1064
NdeII	GATC	6 cut(s)	30, 149, 225, 652, 1117, 1329
NheI	GCTAGC	1 cut(s)	40
NlaIII	CATG	5 cut(s)	55, 467, 686, 1211, 1229
NlaIV	GGNNCC	4 cut(s)	177, 227, 693, 1365
NmeAIII	GCCGAG	4 cut(s)	309, 388, 1195, 1444
NmuCI	GTSAC	5 cut(s)	754, 787, 835, 865, 913
NspI	RCATGY	2 cut(s)	55, 686
NspV	TTCGAA	1 cut(s)	484
PaqCI	CACCTGC	1 cut(s)	1373
PciI	ACATGT	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	3 cut(s)	213, 336, 432
PfeI	GAWTC	2 cut(s)	103, 126
PkrI	GCNGC	8 cut(s)	318, 720, 771, 801, 849, 879, 1057, 1318
Ple19I	CGATCG	1 cut(s)	152
PleI	GAGTC	1 cut(s)	622
PmaCI	CACGTG	1 cut(s)	449
PmlI	CACGTG	1 cut(s)	449
PpsI	GAGTC	1 cut(s)	622
Ppu21I	YACGTR	2 cut(s)	208, 449
PpuMI	RGGWCCY	1 cut(s)	1217
PscI	ACATGT	1 cut(s)	51
PsiI	TTATAA	1 cut(s)	474
Psp1406I	AACGTT	1 cut(s)	1440
Psp5II	RGGWCCY	1 cut(s)	1217
PspCI	CACGTG	1 cut(s)	449
PspN4I	GGNNCC	4 cut(s)	177, 227, 693, 1365
PspPI	GGNCC	1 cut(s)	1217
PspPPI	RGGWCCY	1 cut(s)	1217
PstI	CTGCAG	1 cut(s)	1318
PsuI	RGATCY	1 cut(s)	225
PvuI	CGATCG	1 cut(s)	152
RsaI	GTAC	2 cut(s)	56, 968
RsaNI	GTAC	2 cut(s)	55, 967
SaqAI	TTAA	4 cut(s)	86, 678, 1134, 1239
SatI	GCNGC	8 cut(s)	317, 719, 770, 800, 848, 878, 1056, 1317
Sau3AI	GATC	6 cut(s)	30, 149, 225, 652, 1117, 1329
Sau96I	GGNCC	1 cut(s)	1217
SchI	GAGTC	1 cut(s)	623
SduI	GDGCHC	1 cut(s)	505
SfaNI	GCATC	4 cut(s)	934, 1078, 1270, 1291
SfcI	CTRYAG	4 cut(s)	579, 696, 1254, 1314
SfuI	TTCGAA	1 cut(s)	484
SinI	GGWCC	1 cut(s)	1217
Sse9I	AATT	5 cut(s)	162, 387, 646, 674, 1191
SsiI	CCGC	6 cut(s)	184, 223, 316, 420, 1304, 1333
SspI	AATATT	1 cut(s)	994
SspMI	CTAG	3 cut(s)	41, 230, 260
StyI	CCWWGG	2 cut(s)	394, 1014
TaaI	ACNGT	4 cut(s)	172, 340, 576, 1294
TaiI	ACGT	5 cut(s)	210, 429, 451, 979, 1443
TaqI	TCGA	6 cut(s)	152, 484, 507, 963, 1116, 1244
TasI	AATT	5 cut(s)	162, 387, 646, 674, 1191
TatI	WGTACW	1 cut(s)	54
TauI	GCSGC	1 cut(s)	319
TfiI	GAWTC	2 cut(s)	103, 126
Tru1I	TTAA	4 cut(s)	86, 678, 1134, 1239
Tru9I	TTAA	4 cut(s)	86, 678, 1134, 1239
TscAI	CASTG	1 cut(s)	496
TseFI	GTSAC	5 cut(s)	754, 787, 835, 865, 913
TseI	GCWGC	7 cut(s)	718, 769, 799, 847, 877, 1055, 1316
Tsp45I	GTSAC	5 cut(s)	754, 787, 835, 865, 913
TspDTI	ATGAA	6 cut(s)	155, 212, 361, 686, 998, 1224
TspGWI	ACGGA	1 cut(s)	115
TspRI	CASTG	1 cut(s)	496
VpaK11BI	GGWCC	1 cut(s)	1217
XapI	RAATTY	2 cut(s)	646, 674
XbaI	TCTAGA	1 cut(s)	259
XceI	RCATGY	2 cut(s)	55, 686
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1463
XspI	CTAG	3 cut(s)	41, 230, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.