Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001141

Physical Location & Seq

Genomic Coordinates Forward (+)

13787080 .. 13789315

Gene Structure 2236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G219200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGAATCGCAGCGTACAGCATCCATCACCAGAAATGGGGCAGTCGGTGTCAGCCGTGGAGCAAATCCTGGGCTACAATTTCACGGACAAGAGGCTTCTAGAAGAAGCTCTGACCCACCCCTCATACACCGAATCGGCGTCGTATCAGCGCCTGGAGTTCATCGGCGATGCCGCTGTCAGCCTCGCGCTCAGCAACTACTTCTTCCTCTCTAATCCTGGGGTCGACCCTGGCACCCTCTCTCTGCTACGCTCCGCCAACGTCAGCACCGAGAAGCTCGCACGTGTGGCCGTGCGCCACGGCCTTTATCACCACCTTCGCCACAATGCACCTGCTCTCCTAAATAAGGTTAGGGAGTTTACTGAAGCTGTCAATGGAGAAGATGAGACACCGCTTGTATATGGTGGCTCTGTAAAAGCCCCTAAGATTCTTGCAGATATTGTGGAGTCTGTGGCAGCTGCTATTTATGTTGACTTGAATTTTGATCTGGAGAAACTGTGGATGATATTCAGGGGTTTGTTGGAGCCTATAGTTACTCTAGAAGACTTGCAAGGTCAACCGCAACCGGTGACAATGTTGTTTGAGCTTTGCCAGAAGCATGGGAAGCATGTTGATATCAAACATTGGAGAGATGAGAGGAAGAGTATTGCTAGTGTGTATGTTGATGGAGAATTTGTTGCTTCGGGTTCTTCTGAACATAAGGAATTTGCCAAGCTTGATGCTGCTAAGGTAGCTGTTGATAAGTTATCGCCATCAATGGGTGTAAATGATGAGTCGTTTGAAGGTGTTGTCTTAATGGATGGGTCATTTCATATTGAAGAAGCAAAACAGAAGTTGCATGAGATTTGTGACCAGAAGAAGTGGCCTAGACCAATTTACCACATTGAGAAAGATGAAGGTCCTTCACATGAGAAGAGATTTATGTCCTCAGTTAAAATTTCAACTATAGATGGGGTGCTATACATGAAGGGAGATGAAAAGTCGAGAGTAAGAGATGCAGACAATTCTGCAGCTTCCTTGATGATCCGGGCTTTACAAGAATATCGTTATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM Ribonuclease_3 dsrm

Protein Analysis

351

Amino Acids

39.26

Weight (kDa)

5.72

Isoelectric Point (pI)

41.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20420
fragaria_vesca	FvH4_3g23250
malus_domestica	MD03G1196200.v1.1 MD11G1212500.v1.1
prunus_persica	Prupe.4G219200_v2.0.a1 Prupe.4G219200_v2.0.a1 Prupe.4G219400_v2.0.a1 Prupe.4G219400_v2.0.a1
pyrus_communis	pycom03g14830 pycom11g18750
rosa_chinensis	RchiOBHm_Chr5g0040511 RchiOBHm_Chr5g0040931 RchiOBHm_Chr5g0040941
rosa_laevigata	RLG00000033986 RLG00000034014 RLG00000034016 RLG00000034026
rosa_multiflora	Rmu_co8051550.1_g000001 Rmu_co8392905.1_g000001 Rmu_sc0002475.1_g000019 Rmu_sc0002848.1_g000007 Rmu_sc0006651.1_g000007 Rmu_sc0006651.1_g000008 Rmu_sc0008620.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039580 Rroxscaffold_1G00039750 Rroxscaffold_1G00039760 Rroxscaffold_1G00040130 Rroxscaffold_1G00040850
rosa_rugosa	Rorug02G0350900 Rorug02G0350900 Rorug02G0351000 Rorug05G0185500 Rorug05G0188700 Rorug05G0188900 Rorug05G0188900
rosa_samantha	Rh2AG398700 Rh2BG409100 Rh2CG385500 Rh2CG540800 Rh2DG418900 Rh5AG272400 Rh5AG274300 Rh5AG274400 Rh5AG344200 Rh5BG276400 Rh5BG279300 Rh5BG279400 Rh5CG308900 Rh5CG311400 Rh5CG311600 Rh5DG284900 Rh5DG287500
rosa_wichuraiana	Rw2G032480 Rw5G025510 Rw5G025770 Rw5G025780 Rw5G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	337
Acc36I	ACCTGC	1 cut(s)	337
AccB1I	GGYRCC	1 cut(s)	230
AccI	GTMKAC	1 cut(s)	222
AccII	CGCG	1 cut(s)	185
AciI	CCGC	4 cut(s)	171, 252, 389, 557
AclWI	GGATC	1 cut(s)	1015
AcoI	YGGCCR	1 cut(s)	285
AcsI	RAATTY	4 cut(s)	475, 668, 701, 933
AcuI	CTGAAG	1 cut(s)	381
AcvI	CACGTG	1 cut(s)	281
AcyI	GRCGYC	1 cut(s)	137
AfaI	GTAC	1 cut(s)	15
AfiI	CCNNNNNNNGG	3 cut(s)	35, 343, 755
AflIII	ACRYGT	1 cut(s)	280
AgeI	ACCGGT	1 cut(s)	562
AgsI	TTSAA	4 cut(s)	475, 779, 815, 939
AjnI	CCWGG	4 cut(s)	66, 150, 214, 226
AluBI	AGCT	8 cut(s)	107, 274, 365, 455, 583, 712, 731, 1010
AluI	AGCT	8 cut(s)	107, 274, 365, 455, 583, 712, 731, 1010
Alw26I	GTCTC	1 cut(s)	377
AlwI	GGATC	1 cut(s)	1015
AlwNI	CAGNNNCTG	1 cut(s)	151
AoxI	GGCC	3 cut(s)	285, 298, 860
ApeKI	GCWGC	5 cut(s)	9, 452, 455, 719, 1007
ApoI	RAATTY	4 cut(s)	475, 668, 701, 933
ArsI	GACNNNNNNTTYG	2 cut(s)	461, 493
AsiGI	ACCGGT	1 cut(s)	562
AspLEI	GCGC	3 cut(s)	150, 187, 294
AspS9I	GGNCC	1 cut(s)	896
AsuC2I	CCSGG	1 cut(s)	1025
AsuHPI	GGTGA	3 cut(s)	18, 299, 577
AvaII	GGWCC	1 cut(s)	896
BanI	GGYRCC	1 cut(s)	230
BbrPI	CACGTG	1 cut(s)	281
BbsI	GAAGAC	1 cut(s)	546
BbvI	GCAGC	5 cut(s)	21, 442, 464, 706, 1019
BccI	CCATC	5 cut(s)	31, 656, 757, 791, 941
BceAI	ACGGC	3 cut(s)	38, 272, 313
BciT130I	CCWGG	4 cut(s)	68, 152, 216, 228
BcnI	CCSGG	1 cut(s)	1025
BcoDI	GTCTC	1 cut(s)	377
BfaI	CTAG	4 cut(s)	98, 536, 648, 864
BfmI	CTRYAG	3 cut(s)	525, 942, 1005
BfoI	RGCGCY	1 cut(s)	151
BfuAI	ACCTGC	1 cut(s)	337
BisI	GCNGC	6 cut(s)	10, 171, 453, 456, 720, 1008
BlpI	GCTNAGC	1 cut(s)	188
BlsI	GCNGC	6 cut(s)	11, 172, 454, 457, 721, 1009
Bme1390I	CCNGG	5 cut(s)	68, 152, 216, 228, 1025
Bme18I	GGWCC	1 cut(s)	896
BmgT120I	GGNCC	1 cut(s)	896
BmiI	GGNNCC	2 cut(s)	232, 522
BmrFI	CCNGG	5 cut(s)	68, 152, 216, 228, 1025
BmsI	GCATC	4 cut(s)	28, 157, 706, 982
BpiI	GAAGAC	1 cut(s)	546
BpmI	CTGGAG	2 cut(s)	173, 506
Bpu10I	CCTNAGC	1 cut(s)	723
Bpu1102I	GCTNAGC	1 cut(s)	188
BpuMI	CCSGG	1 cut(s)	1025
BsaAI	YACGTR	1 cut(s)	281
BsaHI	GRCGYC	1 cut(s)	137
BsaJI	CCNNGG	5 cut(s)	54, 67, 215, 226, 295
BsaWI	WCCGGW	1 cut(s)	562
BsaXI	ACNNNNNCTCC	6 cut(s)	318, 348, 479, 509, 657, 687
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 343, 755
Bse118I	RCCGGY	1 cut(s)	562
BseBI	CCWGG	4 cut(s)	68, 152, 216, 228
BseDI	CCNNGG	5 cut(s)	54, 67, 215, 226, 295
BseGI	GGATG	3 cut(s)	19, 504, 802
BseLI	CCNNNNNNNGG	3 cut(s)	35, 343, 755
BseMII	CTCAG	2 cut(s)	202, 939
BseXI	GCAGC	5 cut(s)	21, 442, 464, 706, 1019
Bsh1236I	CGCG	1 cut(s)	185
BshFI	GGCC	3 cut(s)	287, 300, 862
BshNI	GGYRCC	1 cut(s)	230
BshTI	ACCGGT	1 cut(s)	562
BsiSI	CCGG	2 cut(s)	563, 1024
BslI	CCNNNNNNNGG	3 cut(s)	35, 343, 755
BsmAI	GTCTC	1 cut(s)	377
BsnI	GGCC	3 cut(s)	287, 300, 862
Bsp143I	GATC	2 cut(s)	481, 1020
Bsp1720I	GCTNAGC	1 cut(s)	188
BspACI	CCGC	4 cut(s)	171, 252, 389, 557
BspANI	GGCC	3 cut(s)	287, 300, 862
BspCNI	CTCAG	2 cut(s)	201, 938
BspFNI	CGCG	1 cut(s)	185
BspLI	GGNNCC	2 cut(s)	232, 522
BspMAI	CTGCAG	1 cut(s)	1009
BspMI	ACCTGC	1 cut(s)	337
BspPI	GGATC	1 cut(s)	1015
BspT107I	GGYRCC	1 cut(s)	230
BsrFI	RCCGGY	1 cut(s)	562
BssAI	RCCGGY	1 cut(s)	562
BssECI	CCNNGG	5 cut(s)	54, 67, 215, 226, 295
BssMI	GATC	2 cut(s)	481, 1020
BssNI	GRCGYC	1 cut(s)	137
Bst2UI	CCWGG	4 cut(s)	68, 152, 216, 228
Bst4CI	ACNGT	1 cut(s)	495
Bst6I	CTCTTC	2 cut(s)	632, 905
BstACI	GRCGYC	1 cut(s)	137
BstBAI	YACGTR	1 cut(s)	281
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	4 cut(s)	188, 420, 723, 925
BstDSI	CCRYGG	2 cut(s)	54, 295
BstENI	CCTNNNNNAGG	1 cut(s)	341
BstF5I	GGATG	3 cut(s)	19, 504, 802
BstFNI	CGCG	1 cut(s)	185
BstH2I	RGCGCY	1 cut(s)	151
BstHHI	GCGC	3 cut(s)	150, 187, 294
BstKTI	GATC	2 cut(s)	484, 1023
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	2 cut(s)	481, 1020
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 601, 728
BstNI	CCWGG	4 cut(s)	68, 152, 216, 228
BstNSI	RCATGY	1 cut(s)	608
BstSCI	CCNGG	5 cut(s)	66, 150, 214, 226, 1023
BstSFI	CTRYAG	3 cut(s)	525, 942, 1005
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	5 cut(s)	21, 442, 464, 706, 1019
BstV2I	GAAGAC	1 cut(s)	546
BstXI	CCANNNNNNTGG	1 cut(s)	596
BsuRI	GGCC	3 cut(s)	287, 300, 862
BtgI	CCRYGG	2 cut(s)	54, 295
BtgZI	GCGATG	1 cut(s)	180
BtsCI	GGATG	3 cut(s)	19, 504, 802
BveI	ACCTGC	1 cut(s)	337
Cac8I	GCNNGC	1 cut(s)	276
CaiI	CAGNNNCTG	1 cut(s)	151
CfoI	GCGC	3 cut(s)	150, 187, 294
Cfr10I	RCCGGY	1 cut(s)	562
Cfr13I	GGNCC	1 cut(s)	896
CseI	GACGC	1 cut(s)	126
Csp6I	GTAC	1 cut(s)	14
CspAI	ACCGGT	1 cut(s)	562
CviAII	CATG	5 cut(s)	596, 605, 836, 905, 961
CviQI	GTAC	1 cut(s)	14
DdeI	CTNAG	4 cut(s)	188, 420, 723, 925
DpnI	GATC	2 cut(s)	483, 1022
DpnII	GATC	2 cut(s)	481, 1020
EaeI	YGGCCR	1 cut(s)	285
Eam1104I	CTCTTC	2 cut(s)	632, 905
EarI	CTCTTC	2 cut(s)	632, 905
EciI	GGCGGA	1 cut(s)	241
Eco32I	GATATC	1 cut(s)	613
Eco47I	GGWCC	1 cut(s)	896
Eco57I	CTGAAG	1 cut(s)	381
Eco72I	CACGTG	1 cut(s)	281
EcoNI	CCTNNNNNAGG	1 cut(s)	341
EcoO109I	RGGNCCY	1 cut(s)	896
EcoRII	CCWGG	4 cut(s)	66, 150, 214, 226
EcoRV	GATATC	1 cut(s)	613
FaeI	CATG	5 cut(s)	599, 608, 839, 908, 964
FatI	CATG	5 cut(s)	595, 604, 835, 904, 960
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	6 cut(s)	10, 171, 453, 456, 720, 1008
FokI	GGATG	3 cut(s)	6, 511, 809
Fsp4HI	GCNGC	6 cut(s)	10, 171, 453, 456, 720, 1008
FspBI	CTAG	4 cut(s)	98, 536, 648, 864
GlaI	GCGC	3 cut(s)	149, 186, 293
GluI	GCNGC	6 cut(s)	10, 171, 453, 456, 720, 1008
GsuI	CTGGAG	2 cut(s)	173, 506
HaeII	RGCGCY	1 cut(s)	151
HaeIII	GGCC	3 cut(s)	287, 300, 862
HapII	CCGG	2 cut(s)	563, 1024
HgaI	GACGC	1 cut(s)	126
HhaI	GCGC	3 cut(s)	150, 187, 294
Hin1I	GRCGYC	1 cut(s)	137
Hin1II	CATG	5 cut(s)	599, 608, 839, 908, 964
Hin6I	GCGC	3 cut(s)	148, 185, 292
HinP1I	GCGC	3 cut(s)	148, 185, 292
HincII	GTYRAC	3 cut(s)	223, 469, 554
HindII	GTYRAC	3 cut(s)	223, 469, 554
HindIII	AAGCTT	1 cut(s)	710
HinfI	GANTC	5 cut(s)	4, 131, 424, 443, 770
HpaII	CCGG	2 cut(s)	563, 1024
HphI	GGTGA	3 cut(s)	18, 299, 577
Hpy166II	GTNNAC	4 cut(s)	223, 357, 469, 554
Hpy188I	TCNGA	2 cut(s)	111, 691
Hpy188III	TCNNGA	4 cut(s)	98, 485, 536, 981
Hpy8I	GTNNAC	4 cut(s)	223, 357, 469, 554
Hpy99I	CGWCG	1 cut(s)	142
HpyAV	CCTTC	5 cut(s)	323, 773, 887, 909, 958
HpyCH4III	ACNGT	1 cut(s)	495
HpyCH4IV	ACGT	2 cut(s)	258, 280
HpyCH4V	TGCA	6 cut(s)	326, 431, 547, 835, 995, 1007
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 601, 728
HpyF3I	CTNAG	4 cut(s)	188, 420, 723, 925
HpySE526I	ACGT	2 cut(s)	258, 280
Hsp92I	GRCGYC	1 cut(s)	137
Hsp92II	CATG	5 cut(s)	599, 608, 839, 908, 964
HspAI	GCGC	3 cut(s)	148, 185, 292
Kzo9I	GATC	2 cut(s)	481, 1020
LmnI	GCTCC	3 cut(s)	58, 254, 520
Lsp1109I	GCAGC	5 cut(s)	21, 442, 464, 706, 1019
LweI	GCATC	4 cut(s)	28, 157, 706, 982
MaeI	CTAG	4 cut(s)	98, 536, 648, 864
MaeII	ACGT	2 cut(s)	258, 280
MaeIII	GTNAC	3 cut(s)	529, 565, 845
MalI	GATC	2 cut(s)	483, 1022
MboI	GATC	2 cut(s)	481, 1020
MboII	GAAGA	9 cut(s)	113, 193, 389, 551, 649, 678, 827, 865, 922
MluCI	AATT	7 cut(s)	76, 475, 668, 701, 870, 933, 1000
MlyI	GAGTC	2 cut(s)	452, 779
MmeI	TCCRAC	1 cut(s)	498
MnlI	CCTC	7 cut(s)	84, 130, 191, 215, 245, 627, 934
MseI	TTAA	2 cut(s)	791, 930
MspA1I	CMGCKG	2 cut(s)	173, 455
MspI	CCGG	2 cut(s)	563, 1024
MspR9I	CCNGG	5 cut(s)	68, 152, 216, 228, 1025
MvaI	CCWGG	4 cut(s)	68, 152, 216, 228
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	3 cut(s)	284, 601, 728
NciI	CCSGG	1 cut(s)	1025
NdeII	GATC	2 cut(s)	481, 1020
NlaIII	CATG	5 cut(s)	599, 608, 839, 908, 964
NlaIV	GGNNCC	2 cut(s)	232, 522
NmuCI	GTSAC	2 cut(s)	565, 845
NspI	RCATGY	1 cut(s)	608
PaqCI	CACCTGC	1 cut(s)	337
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PfeI	GAWTC	3 cut(s)	4, 131, 424
PinAI	ACCGGT	1 cut(s)	562
PkrI	GCNGC	6 cut(s)	11, 172, 454, 457, 721, 1009
PleI	GAGTC	2 cut(s)	451, 778
PmaCI	CACGTG	1 cut(s)	281
PmlI	CACGTG	1 cut(s)	281
PpsI	GAGTC	2 cut(s)	451, 778
Ppu21I	YACGTR	1 cut(s)	281
PpuMI	RGGWCCY	1 cut(s)	896
Psp5II	RGGWCCY	1 cut(s)	896
Psp6I	CCWGG	4 cut(s)	66, 150, 214, 226
PspCI	CACGTG	1 cut(s)	281
PspGI	CCWGG	4 cut(s)	66, 150, 214, 226
PspN4I	GGNNCC	2 cut(s)	232, 522
PspPI	GGNCC	1 cut(s)	896
PspPPI	RGGWCCY	1 cut(s)	896
PstI	CTGCAG	1 cut(s)	1009
PstNI	CAGNNNCTG	1 cut(s)	151
PvuII	CAGCTG	1 cut(s)	455
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
SalI	GTCGAC	1 cut(s)	221
SaqAI	TTAA	2 cut(s)	791, 930
SatI	GCNGC	6 cut(s)	10, 171, 453, 456, 720, 1008
Sau3AI	GATC	2 cut(s)	481, 1020
Sau96I	GGNCC	1 cut(s)	896
SchI	GAGTC	2 cut(s)	452, 779
ScrFI	CCNGG	5 cut(s)	68, 152, 216, 228, 1025
SfaNI	GCATC	4 cut(s)	28, 157, 706, 982
SfcI	CTRYAG	3 cut(s)	525, 942, 1005
SinI	GGWCC	1 cut(s)	896
Sse9I	AATT	7 cut(s)	76, 475, 668, 701, 870, 933, 1000
SsiI	CCGC	4 cut(s)	171, 252, 389, 557
SspMI	CTAG	4 cut(s)	98, 536, 648, 864
StyD4I	CCNGG	5 cut(s)	66, 150, 214, 226, 1023
TaaI	ACNGT	1 cut(s)	495
TaiI	ACGT	2 cut(s)	261, 283
TaqI	TCGA	2 cut(s)	222, 980
TasI	AATT	7 cut(s)	76, 475, 668, 701, 870, 933, 1000
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	3 cut(s)	4, 131, 424
Tru1I	TTAA	2 cut(s)	791, 930
Tru9I	TTAA	2 cut(s)	791, 930
TseFI	GTSAC	2 cut(s)	565, 845
TseI	GCWGC	5 cut(s)	9, 452, 455, 719, 1007
Tsp45I	GTSAC	2 cut(s)	565, 845
TspDTI	ATGAA	6 cut(s)	17, 148, 797, 906, 977, 987
TspGWI	ACGGA	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	896
XagI	CCTNNNNNAGG	1 cut(s)	341
XapI	RAATTY	4 cut(s)	475, 668, 701, 933
XbaI	TCTAGA	2 cut(s)	97, 535
XceI	RCATGY	1 cut(s)	608
XmiI	GTMKAC	1 cut(s)	222
XspI	CTAG	4 cut(s)	98, 536, 648, 864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.