Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006651.1

Orthogroup ID

OG0001141

Physical Location & Seq

Genomic Coordinates Forward (+)

29322 .. 30425

Gene Structure 1104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006651.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

atgcaatcgatgtgcacgaatgatgcgtcggttgaagatgctgctggaattgatgggtcatttcctgttgaaagagcaacaaatgagttgcataatctttgtgccaagaagaagtggcctaaaccaaattacaccatcgagcatgaagaaggtcctccacacgtgaagaagtttgtatccaaggtaactatagatggtgtgctatctgtaacaggagatgaaaagccgagactgaaacatgcgaagcattctgctgcttctttgatgatccgccgtctgcaagactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM Ribonuclease_3 dsrm

Protein Analysis

95

Amino Acids

10.54

Weight (kDa)

7.83

Isoelectric Point (pI)

34.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20420
fragaria_vesca	FvH4_3g23250
malus_domestica	MD03G1196200.v1.1 MD11G1212500.v1.1
prunus_persica	Prupe.4G219200_v2.0.a1 Prupe.4G219200_v2.0.a1 Prupe.4G219400_v2.0.a1 Prupe.4G219400_v2.0.a1
pyrus_communis	pycom03g14830 pycom11g18750
rosa_chinensis	RchiOBHm_Chr5g0040511 RchiOBHm_Chr5g0040931 RchiOBHm_Chr5g0040941
rosa_laevigata	RLG00000033986 RLG00000034014 RLG00000034016 RLG00000034026
rosa_multiflora	Rmu_co8051550.1_g000001 Rmu_co8392905.1_g000001 Rmu_sc0002475.1_g000019 Rmu_sc0002848.1_g000007 Rmu_sc0006651.1_g000007 Rmu_sc0006651.1_g000008 Rmu_sc0008620.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039580 Rroxscaffold_1G00039750 Rroxscaffold_1G00039760 Rroxscaffold_1G00040130 Rroxscaffold_1G00040850
rosa_rugosa	Rorug02G0350900 Rorug02G0350900 Rorug02G0351000 Rorug05G0185500 Rorug05G0188700 Rorug05G0188900 Rorug05G0188900
rosa_samantha	Rh2AG398700 Rh2BG409100 Rh2CG385500 Rh2CG540800 Rh2DG418900 Rh5AG272400 Rh5AG274300 Rh5AG274400 Rh5AG344200 Rh5BG276400 Rh5BG279300 Rh5BG279400 Rh5CG308900 Rh5CG311400 Rh5CG311600 Rh5DG284900 Rh5DG287500
rosa_wichuraiana	Rw2G032480 Rw5G025510 Rw5G025770 Rw5G025780 Rw5G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	271
AclWI	GGATC	1 cut(s)	262
AcvI	CACGTG	1 cut(s)	163
AflIII	ACRYGT	1 cut(s)	160
AgsI	TTSAA	2 cut(s)	35, 71
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	223
Alw44I	GTGCAC	1 cut(s)	13
AlwI	GGATC	1 cut(s)	262
AoxI	GGCC	1 cut(s)	116
ApaLI	GTGCAC	1 cut(s)	13
ApeKI	GCWGC	2 cut(s)	41, 254
ArsI	GACNNNNNNTTYG	2 cut(s)	11, 43
AspS9I	GGNCC	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	152
BaeGI	GKGCMC	1 cut(s)	17
BbrPI	CACGTG	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	2 cut(s)	28, 241
BccI	CCATC	3 cut(s)	47, 143, 188
BceAI	ACGGC	1 cut(s)	258
BciVI	GTATCC	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	223
BfmI	CTRYAG	1 cut(s)	189
BfuI	GTATCC	1 cut(s)	187
BisI	GCNGC	2 cut(s)	42, 255
BlsI	GCNGC	2 cut(s)	43, 256
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	152
BmsI	GCATC	2 cut(s)	13, 28
Bsa29I	ATCGAT	1 cut(s)	8
BsaAI	YACGTR	1 cut(s)	163
BsaJI	CCNNGG	1 cut(s)	180
BseCI	ATCGAT	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	180
BseSI	GKGCMC	1 cut(s)	17
BseXI	GCAGC	2 cut(s)	28, 241
BshFI	GGCC	1 cut(s)	118
BshVI	ATCGAT	1 cut(s)	8
BsiHKAI	GWGCWC	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	223
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	118
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	1 cut(s)	267
BspACI	CCGC	1 cut(s)	271
BspANI	GGCC	1 cut(s)	118
BspDI	ATCGAT	1 cut(s)	8
BspPI	GGATC	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	180
BstBAI	YACGTR	1 cut(s)	163
BstKTI	GATC	1 cut(s)	270
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	267
BstNSI	RCATGY	1 cut(s)	242
BstSFI	CTRYAG	1 cut(s)	189
BstSLI	GKGCMC	1 cut(s)	17
BstV1I	GCAGC	2 cut(s)	28, 241
Bsu15I	ATCGAT	1 cut(s)	8
BsuI	GTATCC	1 cut(s)	187
BsuRI	GGCC	1 cut(s)	118
BsuTUI	ATCGAT	1 cut(s)	8
Cfr13I	GGNCC	1 cut(s)	152
ClaI	ATCGAT	1 cut(s)	8
CseI	GACGC	1 cut(s)	15
CviAII	CATG	2 cut(s)	143, 239
CviJI	RGCY	2 cut(s)	118, 226
CviKI_1	RGCY	2 cut(s)	118, 226
DpnI	GATC	1 cut(s)	269
DpnII	GATC	1 cut(s)	267
EciI	GGCGGA	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	152
Eco72I	CACGTG	1 cut(s)	163
EcoO109I	RGGNCCY	1 cut(s)	152
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	2 cut(s)	146, 242
FaiI	YATR	4 cut(s)	93, 144, 191, 240
FatI	CATG	2 cut(s)	142, 238
Fnu4HI	GCNGC	2 cut(s)	42, 255
Fsp4HI	GCNGC	2 cut(s)	42, 255
GluI	GCNGC	2 cut(s)	42, 255
HaeIII	GGCC	1 cut(s)	118
HgaI	GACGC	1 cut(s)	15
Hin1II	CATG	2 cut(s)	146, 242
Hpy166II	GTNNAC	1 cut(s)	15
Hpy8I	GTNNAC	1 cut(s)	15
Hpy99I	CGWCG	1 cut(s)	31
HpyAV	CCTTC	1 cut(s)	143
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	4 cut(s)	4, 15, 91, 280
HpySE526I	ACGT	1 cut(s)	162
Hsp92II	CATG	2 cut(s)	146, 242
Kzo9I	GATC	1 cut(s)	267
LpnPI	CCDG	3 cut(s)	30, 78, 198
Lsp1109I	GCAGC	2 cut(s)	28, 241
LweI	GCATC	2 cut(s)	13, 28
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	2 cut(s)	184, 208
MalI	GATC	1 cut(s)	269
MboI	GATC	1 cut(s)	267
MboII	GAAGA	4 cut(s)	47, 121, 158, 178
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	2 cut(s)	48, 127
MnlI	CCTC	1 cut(s)	165
Mva1269I	GAATGC	1 cut(s)	247
NdeII	GATC	1 cut(s)	267
NlaIII	CATG	2 cut(s)	146, 242
NmeAIII	GCCGAG	1 cut(s)	252
NspI	RCATGY	1 cut(s)	242
PcsI	WCGNNNNNNNCGW	2 cut(s)	14, 23
PctI	GAATGC	1 cut(s)	247
PkrI	GCNGC	2 cut(s)	43, 256
PmaCI	CACGTG	1 cut(s)	163
PmlI	CACGTG	1 cut(s)	163
Ppu21I	YACGTR	1 cut(s)	163
PpuMI	RGGWCCY	1 cut(s)	152
Psp5II	RGGWCCY	1 cut(s)	152
PspCI	CACGTG	1 cut(s)	163
PspPI	GGNCC	1 cut(s)	152
PspPPI	RGGWCCY	1 cut(s)	152
SatI	GCNGC	2 cut(s)	42, 255
Sau3AI	GATC	1 cut(s)	267
Sau96I	GGNCC	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	17
SetI	ASST	3 cut(s)	154, 165, 186
SfaNI	GCATC	2 cut(s)	13, 28
SfcI	CTRYAG	1 cut(s)	189
SinI	GGWCC	1 cut(s)	152
Sse9I	AATT	2 cut(s)	48, 127
SsiI	CCGC	1 cut(s)	271
StyI	CCWWGG	1 cut(s)	180
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	2 cut(s)	8, 138
TasI	AATT	2 cut(s)	48, 127
TseI	GCWGC	2 cut(s)	41, 254
TspDTI	ATGAA	2 cut(s)	159, 234
VneI	GTGCAC	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	152
XceI	RCATGY	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.