Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001141

Physical Location & Seq

Genomic Coordinates Forward (+)

44133761 .. 44136075

Gene Structure 2315 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0351000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGACCACTTCATCGTTGTCCTTACAGCGTTGGGAGCCACCTCCCCCTTGTTTCATCAAGATAAATGTAGATGCTTTCTGGCACTTAGAATCACTTGGAGGTGGAATTGCTGCTCTCTTTCGAGACTCCTCTGGTTTGCTCCTCCATTGTGTGGCCAAGTATGTTTGTACCTCTTCTCCACTACTTGCGGAAGCCTTGGCTTGTAGAGAGGCTTTACTCCATGCTCATAATCTCTCTCTGACCGATATCATGATCACTTCAGACTCTCAAGATCTTATTCACGCCCTTTCATACTCATCTCATCATTCTCATTTGTTGCTAGCTCATATCGTCTCTGATATCCAAATTCTGGCTGCTTCTTTTAGCAGCCTCCCAGCAGAAAAGCCAATGTTGCGGCAGATCACGTTGCTGCTCTGGCATATAGGAAGGTGTGCCCACCCACGTGGGTGTAGCAACCGCCTCCCTCCTTGCAACTTATTTTGCTTTCTGATGTTACTTCAGTTGTACCTTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM Ribonuclease_3 dsrm

Protein Analysis

171

Amino Acids

18.91

Weight (kDa)

6.81

Isoelectric Point (pI)

52.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	22 - 123	2.3e-14	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20420
fragaria_vesca	FvH4_3g23250
malus_domestica	MD03G1196200.v1.1 MD11G1212500.v1.1
prunus_persica	Prupe.4G219200_v2.0.a1 Prupe.4G219200_v2.0.a1 Prupe.4G219400_v2.0.a1 Prupe.4G219400_v2.0.a1
pyrus_communis	pycom03g14830 pycom11g18750
rosa_chinensis	RchiOBHm_Chr5g0040511 RchiOBHm_Chr5g0040931 RchiOBHm_Chr5g0040941
rosa_laevigata	RLG00000033986 RLG00000034014 RLG00000034016 RLG00000034026
rosa_multiflora	Rmu_co8051550.1_g000001 Rmu_co8392905.1_g000001 Rmu_sc0002475.1_g000019 Rmu_sc0002848.1_g000007 Rmu_sc0006651.1_g000007 Rmu_sc0006651.1_g000008 Rmu_sc0008620.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039580 Rroxscaffold_1G00039750 Rroxscaffold_1G00039760 Rroxscaffold_1G00040130 Rroxscaffold_1G00040850
rosa_rugosa	Rorug02G0350900 Rorug02G0350900 Rorug02G0351000 Rorug05G0185500 Rorug05G0188700 Rorug05G0188900 Rorug05G0188900
rosa_samantha	Rh2AG398700 Rh2BG409100 Rh2CG385500 Rh2CG540800 Rh2DG418900 Rh5AG272400 Rh5AG274300 Rh5AG274400 Rh5AG344200 Rh5BG276400 Rh5BG279300 Rh5BG279400 Rh5CG308900 Rh5CG311400 Rh5CG311600 Rh5DG284900 Rh5DG287500
rosa_wichuraiana	Rw2G032480 Rw5G025510 Rw5G025770 Rw5G025780 Rw5G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	151, 349
AciI	CCGC	3 cut(s)	188, 394, 457
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	1 cut(s)	345
AcuI	CTGAAG	2 cut(s)	243, 482
AcvI	CACGTG	1 cut(s)	443
AfaI	GTAC	2 cut(s)	169, 506
AfiI	CCNNNNNNNGG	2 cut(s)	151, 349
AleI	CACNNNNGTG	2 cut(s)	441, 445
AluBI	AGCT	2 cut(s)	323, 513
AluI	AGCT	2 cut(s)	323, 513
Alw26I	GTCTC	2 cut(s)	117, 337
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	4 cut(s)	110, 353, 366, 409
ApoI	RAATTY	1 cut(s)	345
AsuNHI	GCTAGC	1 cut(s)	319
BaeGI	GKGCMC	1 cut(s)	436
BalI	TGGCCA	1 cut(s)	155
BbrPI	CACGTG	1 cut(s)	443
BbvI	GCAGC	4 cut(s)	97, 340, 378, 396
BclI	TGATCA	1 cut(s)	252
BcoDI	GTCTC	2 cut(s)	117, 337
BfaI	CTAG	2 cut(s)	320, 514
BglII	AGATCT	1 cut(s)	271
BisI	GCNGC	5 cut(s)	111, 354, 367, 395, 410
BlsI	GCNGC	5 cut(s)	112, 355, 368, 396, 411
BmiI	GGNNCC	1 cut(s)	36
BmsI	GCATC	1 cut(s)	61
BmtI	GCTAGC	1 cut(s)	323
Bpu10I	CCTNAGC	1 cut(s)	509
BpuEI	CTTGAG	1 cut(s)	252
BsaAI	YACGTR	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	195
BsaXI	ACNNNNNCTCC	2 cut(s)	160, 190
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 349
BseDI	CCNNGG	1 cut(s)	195
BseLI	CCNNNNNNNGG	2 cut(s)	151, 349
BseRI	GAGGAG	2 cut(s)	118, 131
BseSI	GKGCMC	1 cut(s)	436
BseXI	GCAGC	4 cut(s)	97, 340, 378, 396
BseYI	CCCAGC	1 cut(s)	373
BshFI	GGCC	1 cut(s)	155
BslI	CCNNNNNNNGG	2 cut(s)	151, 349
BsmAI	GTCTC	2 cut(s)	117, 337
BsmBI	CGTCTC	1 cut(s)	337
BsnI	GGCC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp143I	GATC	3 cut(s)	252, 271, 399
BspACI	CCGC	3 cut(s)	188, 394, 457
BspANI	GGCC	1 cut(s)	155
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	1 cut(s)	36
BspOI	GCTAGC	1 cut(s)	323
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	3 cut(s)	252, 271, 399
BssT1I	CCWWGG	1 cut(s)	195
Bst6I	CTCTTC	1 cut(s)	178
BstBAI	YACGTR	1 cut(s)	443
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	2 cut(s)	85, 509
BstKTI	GATC	3 cut(s)	255, 274, 402
BstMAI	GTCTC	2 cut(s)	117, 337
BstMBI	GATC	3 cut(s)	252, 271, 399
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 391, 415
BstSLI	GKGCMC	1 cut(s)	436
BstV1I	GCAGC	4 cut(s)	97, 340, 378, 396
BstX2I	RGATCY	1 cut(s)	271
BstXI	CCANNNNNNTGG	1 cut(s)	443
BstYI	RGATCY	1 cut(s)	271
BsuRI	GGCC	1 cut(s)	155
Cac8I	GCNNGC	1 cut(s)	321
CciI	TCATGA	1 cut(s)	249
Csp6I	GTAC	2 cut(s)	168, 505
CviAII	CATG	2 cut(s)	221, 250
CviQI	GTAC	2 cut(s)	168, 505
DdeI	CTNAG	2 cut(s)	85, 509
DpnI	GATC	3 cut(s)	254, 273, 401
DpnII	GATC	3 cut(s)	252, 271, 399
EaeI	YGGCCR	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	195
Eco32I	GATATC	2 cut(s)	247, 340
Eco57I	CTGAAG	2 cut(s)	243, 482
Eco72I	CACGTG	1 cut(s)	443
EcoRV	GATATC	2 cut(s)	247, 340
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
Esp3I	CGTCTC	1 cut(s)	337
FaeI	CATG	2 cut(s)	224, 253
FaiI	YATR	8 cut(s)	162, 222, 228, 251, 292, 327, 420, 422
FatI	CATG	2 cut(s)	220, 249
FbaI	TGATCA	1 cut(s)	252
Fnu4HI	GCNGC	5 cut(s)	111, 354, 367, 395, 410
Fsp4HI	GCNGC	5 cut(s)	111, 354, 367, 395, 410
FspBI	CTAG	2 cut(s)	320, 514
GluI	GCNGC	5 cut(s)	111, 354, 367, 395, 410
GsaI	CCCAGC	1 cut(s)	377
HaeIII	GGCC	1 cut(s)	155
Hin1II	CATG	2 cut(s)	224, 253
HinfI	GANTC	3 cut(s)	89, 125, 263
Hpy188I	TCNGA	4 cut(s)	240, 262, 337, 489
Hpy188III	TCNNGA	4 cut(s)	58, 122, 250, 269
HpyAV	CCTTC	1 cut(s)	420
HpyCH4IV	ACGT	2 cut(s)	404, 442
HpyCH4V	TGCA	1 cut(s)	471
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 391, 415
HpyF3I	CTNAG	2 cut(s)	85, 509
HpySE526I	ACGT	2 cut(s)	404, 442
Hsp92II	CATG	2 cut(s)	224, 253
Ksp22I	TGATCA	1 cut(s)	252
Kzo9I	GATC	3 cut(s)	252, 271, 399
LmnI	GCTCC	2 cut(s)	34, 144
LpnPI	CCDG	5 cut(s)	64, 117, 335, 387, 400
Lsp1109I	GCAGC	4 cut(s)	97, 340, 378, 396
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	2 cut(s)	320, 514
MaeII	ACGT	2 cut(s)	404, 442
MaeIII	GTNAC	1 cut(s)	492
MalI	GATC	3 cut(s)	254, 273, 401
MboI	GATC	3 cut(s)	252, 271, 399
MboII	GAAGA	1 cut(s)	165
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	1 cut(s)	436
MlsI	TGGCCA	1 cut(s)	155
MluCI	AATT	2 cut(s)	105, 345
MluNI	TGGCCA	1 cut(s)	155
MlyI	GAGTC	2 cut(s)	119, 257
MnlI	CCTC	9 cut(s)	51, 92, 139, 152, 181, 202, 380, 470, 474
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
MslI	CAYNNNNRTG	2 cut(s)	441, 445
Msp20I	TGGCCA	1 cut(s)	155
MwoI	GCNNNNNNNGC	3 cut(s)	34, 391, 415
NdeII	GATC	3 cut(s)	252, 271, 399
NheI	GCTAGC	1 cut(s)	319
NlaIII	CATG	2 cut(s)	224, 253
NlaIV	GGNNCC	1 cut(s)	36
OliI	CACNNNNGTG	2 cut(s)	441, 445
PagI	TCATGA	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	89
PflMI	CCANNNNNTGG	2 cut(s)	151, 349
PkrI	GCNGC	5 cut(s)	112, 355, 368, 396, 411
PleI	GAGTC	2 cut(s)	119, 257
PmaCI	CACGTG	1 cut(s)	443
PmlI	CACGTG	1 cut(s)	443
PpsI	GAGTC	2 cut(s)	119, 257
Ppu21I	YACGTR	1 cut(s)	443
PspCI	CACGTG	1 cut(s)	443
PspFI	CCCAGC	1 cut(s)	373
PspN4I	GGNNCC	1 cut(s)	36
PsuI	RGATCY	1 cut(s)	271
RsaI	GTAC	2 cut(s)	169, 506
RsaNI	GTAC	2 cut(s)	168, 505
RseI	CAYNNNNRTG	2 cut(s)	441, 445
SatI	GCNGC	5 cut(s)	111, 354, 367, 395, 410
Sau3AI	GATC	3 cut(s)	252, 271, 399
SchI	GAGTC	2 cut(s)	119, 257
SduI	GDGCHC	1 cut(s)	436
SetI	ASST	9 cut(s)	43, 103, 173, 325, 407, 431, 445, 510, 515
SfaNI	GCATC	1 cut(s)	61
SmiMI	CAYNNNNRTG	2 cut(s)	441, 445
SmlI	CTYRAG	1 cut(s)	267
SmoI	CTYRAG	1 cut(s)	267
Sse9I	AATT	2 cut(s)	105, 345
SsiI	CCGC	3 cut(s)	188, 394, 457
SspMI	CTAG	2 cut(s)	320, 514
StyI	CCWWGG	1 cut(s)	195
TaiI	ACGT	2 cut(s)	407, 445
TaqI	TCGA	1 cut(s)	121
TaqII	GACCGA	1 cut(s)	257
TasI	AATT	2 cut(s)	105, 345
TauI	GCSGC	1 cut(s)	397
TfiI	GAWTC	1 cut(s)	89
TseI	GCWGC	4 cut(s)	110, 353, 366, 409
TspDTI	ATGAA	2 cut(s)	43, 279
Van91I	CCANNNNNTGG	2 cut(s)	151, 349
XapI	RAATTY	1 cut(s)	345
XspI	CTAG	2 cut(s)	320, 514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.