Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001141

Physical Location & Seq

Genomic Coordinates Reverse (-)

7119191 .. 7121023

Gene Structure 1833 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G20420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGATCACTCTATCTCACCGGAGTACAATTTCCCGGCCATCACTCGCTGTAGTTTATCCAATTCACTTCCTCACCGTCCACCATCACCACTGCCGTCTTCGGCCGATATCCACCGCTTCTACAATTCTCTTTCCCCATCAGCACCAAGCGTTCCGGTTTCGTCGGAGATGGAGTCTATGGAAGCAGTAGAGAAGATACTCAACTACAAATTCAGTAACAAGAGTCTTCTCAAGGAAGCGATTACACACACCTCGTGTACAGACTTTCCTTCTTACGAGCGGCTAGAGTTCATAGGCGATAGTGCTATTGGTTTAGCAATCTCAAATTACCTATACCTAACGTACCCTAGCCTTGAGCCACACGACTTGTCTCTGTTGAGAGCAGCTAATGTTAGTACTGAGAAACTCGCTCGTGTCTCTCTTAATCATGGTCTCTATTCATTTCTTCGACGCAATGCTCCTTCTTTAGATGAAAAGGTTAAAGAGTTCTCAGAGGCGGTGGGGAAAGAAGATGATTTGTCAGTGTCATATGGTGGATTAGTCAAAGCCCCTAAAGTTCTAGCTGATCTTTTTGAGTCTTTAGCTGGAGCTGTGTATGTTGATGTCAACTTTGATCTACAAAGACTATGGGTGATCTTTAGGGGTCTTTTGGAACCGATAGTTACATTGGACGATTTGCAGAAGCAACCTCAACCTGTGTCTATGCTTTTTAAATTATGTCATAAACATAAGAAGCGAATCGACATCAAGAATTGGAAAGATGGTAATGTCAGTATTGCTGTTATATATCTTGATGATGAGCTTTTGGCTTCAGGCCGAGCTGAGAATAAAGATATCGCAAGGCTGATCGCTGCTAAAGAAGCGTTACGGAAGTTGTCAGAAGTTTTTCCCGTTGAAATGGTTATTGATGAAGATAGTGTAGAGATTCAACTTACACATGCTAAAACGAAGTTGAACGAGATTTGCTTAAAGAAAAAGTGGCCTAAGCCTATCTACAGCGTTGAGGAAGATAGAAGCTCGGTACAGGGAAAGAGATTTGTTTGCTCTGCTAAGATTAAGATAACAGAAGAAAAAACATTATATATGAAGGGAGATGAACAGTCCAAGATAAAGAAAGCAGAAAGCTCCTCGGCGTATCACATGATTAGAGCCTTGAGAAAATCTCATTATCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM Ribonuclease_3 dsrm

Protein Analysis

391

Amino Acids

44.11

Weight (kDa)

7.65

Isoelectric Point (pI)

50.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonucleas_3_3	PF14622	73 - 205	1.4e-13	Ribonuclease-III-like
Ribonuclease_3	PF00636	93 - 201	2.2e-22	Ribonuclease III domain
dsrm	PF00035	232 - 292	7.5e-08	Double-stranded RNA binding motif
DND1_DSRM	PF14709	313 - 385	2.4e-12	double strand RNA binding domain from DEAD END PROTEIN 1
dsrm	PF00035	314 - 385	2.7e-11	Double-stranded RNA binding motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20420
fragaria_vesca	FvH4_3g23250
malus_domestica	MD03G1196200.v1.1 MD11G1212500.v1.1
prunus_persica	Prupe.4G219200_v2.0.a1 Prupe.4G219200_v2.0.a1 Prupe.4G219400_v2.0.a1 Prupe.4G219400_v2.0.a1
pyrus_communis	pycom03g14830 pycom11g18750
rosa_chinensis	RchiOBHm_Chr5g0040511 RchiOBHm_Chr5g0040931 RchiOBHm_Chr5g0040941
rosa_laevigata	RLG00000033986 RLG00000034014 RLG00000034016 RLG00000034026
rosa_multiflora	Rmu_co8051550.1_g000001 Rmu_co8392905.1_g000001 Rmu_sc0002475.1_g000019 Rmu_sc0002848.1_g000007 Rmu_sc0006651.1_g000007 Rmu_sc0006651.1_g000008 Rmu_sc0008620.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039580 Rroxscaffold_1G00039750 Rroxscaffold_1G00039760 Rroxscaffold_1G00040130 Rroxscaffold_1G00040850
rosa_rugosa	Rorug02G0350900 Rorug02G0350900 Rorug02G0351000 Rorug05G0185500 Rorug05G0188700 Rorug05G0188900 Rorug05G0188900
rosa_samantha	Rh2AG398700 Rh2BG409100 Rh2CG385500 Rh2CG540800 Rh2DG418900 Rh5AG272400 Rh5AG274300 Rh5AG274400 Rh5AG344200 Rh5BG276400 Rh5BG279300 Rh5BG279400 Rh5CG308900 Rh5CG311400 Rh5CG311600 Rh5DG284900 Rh5DG287500
rosa_wichuraiana	Rw2G032480 Rw5G025510 Rw5G025770 Rw5G025780 Rw5G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	280
AciI	CCGC	3 cut(s)	115, 280, 497
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	2 cut(s)	36, 102
AcsI	RAATTY	1 cut(s)	209
AcuI	CTGAAG	1 cut(s)	795
AdeI	CACNNNGTG	1 cut(s)	255
AfaI	GTAC	5 cut(s)	26, 259, 344, 397, 1023
AgsI	TTSAA	3 cut(s)	896, 929, 955
AluBI	AGCT	8 cut(s)	386, 563, 584, 590, 802, 821, 1017, 1125
AluI	AGCT	8 cut(s)	386, 563, 584, 590, 802, 821, 1017, 1125
Alw26I	GTCTC	3 cut(s)	375, 421, 437
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	4 cut(s)	36, 102, 814, 980
ApeKI	GCWGC	2 cut(s)	383, 851
ApoI	RAATTY	1 cut(s)	209
Asp700I	GAANNNNTTC	1 cut(s)	885
AsuC2I	CCSGG	1 cut(s)	35
AsuHPI	GGTGA	4 cut(s)	9, 65, 78, 643
BauI	CACGAG	2 cut(s)	253, 411
BbsI	GAAGAC	2 cut(s)	90, 218
BbvI	GCAGC	2 cut(s)	395, 838
BccI	CCATC	5 cut(s)	47, 91, 145, 163, 755
BceAI	ACGGC	1 cut(s)	79
BcnI	CCSGG	1 cut(s)	35
BcoDI	GTCTC	3 cut(s)	375, 421, 437
BfaI	CTAG	3 cut(s)	284, 348, 560
BfmI	CTRYAG	2 cut(s)	49, 994
BisI	GCNGC	3 cut(s)	281, 384, 852
BlsI	GCNGC	3 cut(s)	282, 385, 853
BmcAI	AGTACT	1 cut(s)	397
Bme1390I	CCNGG	1 cut(s)	35
BmiI	GGNNCC	1 cut(s)	654
BmrFI	CCNGG	1 cut(s)	35
BpiI	GAAGAC	2 cut(s)	90, 218
BplI	GAGNNNNNCTC	1 cut(s)	1147
BpmI	CTGGAG	1 cut(s)	606
Bpu10I	CCTNAGC	1 cut(s)	984
BpuEI	CTTGAG	3 cut(s)	215, 374, 1174
BpuMI	CCSGG	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	437
BsaJI	CCNNGG	1 cut(s)	1128
BsaWI	WCCGGW	2 cut(s)	19, 154
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bse3DI	GCAATG	1 cut(s)	460
BseDI	CCNNGG	1 cut(s)	1128
BseMI	GCAATG	1 cut(s)	460
BseMII	CTCAG	3 cut(s)	390, 504, 813
BseRI	GAGGAG	1 cut(s)	1117
BseX3I	CGGCCG	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	395, 838
Bsh1285I	CGRYCG	1 cut(s)	105
BshFI	GGCC	4 cut(s)	38, 104, 816, 982
BsiEI	CGRYCG	1 cut(s)	105
BsiSI	CCGG	3 cut(s)	20, 35, 155
BsmAI	GTCTC	3 cut(s)	375, 421, 437
BsnI	GGCC	4 cut(s)	38, 104, 816, 982
Bso31I	GGTCTC	1 cut(s)	437
Bsp1407I	TGTACA	1 cut(s)	257
Bsp143I	GATC	5 cut(s)	4, 565, 613, 633, 846
BspACI	CCGC	3 cut(s)	115, 280, 497
BspANI	GGCC	4 cut(s)	38, 104, 816, 982
BspCNI	CTCAG	3 cut(s)	391, 503, 814
BspLI	GGNNCC	1 cut(s)	654
BspPI	GGATC	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	437
BsrBI	CCGCTC	1 cut(s)	280
BsrDI	GCAATG	1 cut(s)	460
BsrGI	TGTACA	1 cut(s)	257
BssECI	CCNNGG	1 cut(s)	1128
BssMI	GATC	5 cut(s)	4, 565, 613, 633, 846
BssSI	CACGAG	2 cut(s)	253, 411
Bst2BI	CACGAG	2 cut(s)	253, 411
Bst4CI	ACNGT	2 cut(s)	77, 1101
BstAUI	TGTACA	1 cut(s)	257
BstDEI	CTNAG	5 cut(s)	399, 490, 822, 984, 1050
BstKTI	GATC	5 cut(s)	7, 568, 616, 636, 849
BstMAI	GTCTC	3 cut(s)	375, 421, 437
BstMBI	GATC	5 cut(s)	4, 565, 613, 633, 846
BstMCI	CGRYCG	1 cut(s)	105
BstMWI	GCNNNNNNNGC	1 cut(s)	860
BstNSI	RCATGY	1 cut(s)	941
BstSCI	CCNGG	1 cut(s)	33
BstSFI	CTRYAG	2 cut(s)	49, 994
BstV1I	GCAGC	2 cut(s)	395, 838
BstV2I	GAAGAC	2 cut(s)	90, 218
BstZI	CGGCCG	1 cut(s)	102
BsuRI	GGCC	4 cut(s)	38, 104, 816, 982
BtsI	GCAGTG	1 cut(s)	89
BtsIMutI	CAGTG	2 cut(s)	89, 528
CseI	GACGC	1 cut(s)	459
Csp6I	GTAC	5 cut(s)	25, 258, 343, 396, 1022
CspCI	CAANNNNNGTGG	2 cut(s)	348, 383
CviAII	CATG	3 cut(s)	428, 938, 1141
CviQI	GTAC	5 cut(s)	25, 258, 343, 396, 1022
DdeI	CTNAG	5 cut(s)	399, 490, 822, 984, 1050
DpnI	GATC	5 cut(s)	6, 567, 615, 635, 848
DpnII	GATC	5 cut(s)	4, 565, 613, 633, 846
DraI	TTTAAA	1 cut(s)	712
DraIII	CACNNNGTG	1 cut(s)	255
EaeI	YGGCCR	2 cut(s)	36, 102
EagI	CGGCCG	1 cut(s)	102
EclXI	CGGCCG	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	437
Eco32I	GATATC	2 cut(s)	109, 835
Eco52I	CGGCCG	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	795
EcoRV	GATATC	2 cut(s)	109, 835
FaeI	CATG	3 cut(s)	431, 941, 1144
FatI	CATG	3 cut(s)	427, 937, 1140
FauNDI	CATATG	1 cut(s)	529
Fnu4HI	GCNGC	3 cut(s)	281, 384, 852
Fsp4HI	GCNGC	3 cut(s)	281, 384, 852
FspBI	CTAG	3 cut(s)	284, 348, 560
GluI	GCNGC	3 cut(s)	281, 384, 852
GsuI	CTGGAG	1 cut(s)	606
HaeIII	GGCC	4 cut(s)	38, 104, 816, 982
HapII	CCGG	3 cut(s)	20, 35, 155
HgaI	GACGC	1 cut(s)	459
Hin1II	CATG	3 cut(s)	431, 941, 1144
HincII	GTYRAC	1 cut(s)	607
HindII	GTYRAC	1 cut(s)	607
HinfI	GANTC	5 cut(s)	173, 223, 575, 738, 925
HpaII	CCGG	3 cut(s)	20, 35, 155
HphI	GGTGA	4 cut(s)	9, 65, 78, 643
Hpy166II	GTNNAC	3 cut(s)	80, 258, 607
Hpy188I	TCNGA	3 cut(s)	166, 493, 880
Hpy188III	TCNNGA	2 cut(s)	748, 791
Hpy8I	GTNNAC	3 cut(s)	80, 258, 607
Hpy99I	CGWCG	2 cut(s)	166, 453
HpyAV	CCTTC	3 cut(s)	279, 471, 1081
HpyCH4III	ACNGT	2 cut(s)	77, 1101
HpyCH4IV	ACGT	1 cut(s)	341
HpyCH4V	TGCA	1 cut(s)	679
HpyF10VI	GCNNNNNNNGC	1 cut(s)	860
HpyF3I	CTNAG	5 cut(s)	399, 490, 822, 984, 1050
HpySE526I	ACGT	1 cut(s)	341
Hsp92II	CATG	3 cut(s)	431, 941, 1144
Kzo9I	GATC	5 cut(s)	4, 565, 613, 633, 846
LmnI	GCTCC	3 cut(s)	463, 587, 1130
LpnPI	CCDG	7 cut(s)	33, 48, 168, 570, 708, 798, 1010
Lsp1109I	GCAGC	2 cut(s)	395, 838
MaeI	CTAG	3 cut(s)	284, 348, 560
MaeII	ACGT	1 cut(s)	341
MaeIII	GTNAC	3 cut(s)	215, 661, 864
MalI	GATC	5 cut(s)	6, 567, 615, 635, 848
MbiI	CCGCTC	1 cut(s)	280
MboI	GATC	5 cut(s)	4, 565, 613, 633, 846
MboII	GAAGA	8 cut(s)	90, 205, 218, 437, 521, 923, 1019, 1079
MluCI	AATT	7 cut(s)	28, 61, 124, 209, 325, 713, 751
MlyI	GAGTC	3 cut(s)	182, 232, 584
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	6 cut(s)	81, 262, 487, 699, 997, 1138
MroXI	GAANNNNTTC	1 cut(s)	885
MseI	TTAA	5 cut(s)	423, 480, 711, 968, 1056
MspI	CCGG	3 cut(s)	20, 35, 155
MspR9I	CCNGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	860
NciI	CCSGG	1 cut(s)	35
NdeI	CATATG	1 cut(s)	529
NdeII	GATC	5 cut(s)	4, 565, 613, 633, 846
NlaIII	CATG	3 cut(s)	431, 941, 1144
NlaIV	GGNNCC	1 cut(s)	654
NmeAIII	GCCGAG	2 cut(s)	842, 1109
NspI	RCATGY	1 cut(s)	941
PdmI	GAANNNNTTC	1 cut(s)	885
PfeI	GAWTC	2 cut(s)	738, 925
PkrI	GCNGC	3 cut(s)	282, 385, 853
PleI	GAGTC	3 cut(s)	181, 231, 583
PpsI	GAGTC	3 cut(s)	181, 231, 583
PspN4I	GGNNCC	1 cut(s)	654
RsaI	GTAC	5 cut(s)	26, 259, 344, 397, 1023
RsaNI	GTAC	5 cut(s)	25, 258, 343, 396, 1022
SaqAI	TTAA	5 cut(s)	423, 480, 711, 968, 1056
SatI	GCNGC	3 cut(s)	281, 384, 852
Sau3AI	GATC	5 cut(s)	4, 565, 613, 633, 846
ScaI	AGTACT	1 cut(s)	397
SchI	GAGTC	3 cut(s)	182, 232, 584
ScrFI	CCNGG	1 cut(s)	35
SfcI	CTRYAG	2 cut(s)	49, 994
SmlI	CTYRAG	3 cut(s)	230, 353, 1153
SmoI	CTYRAG	3 cut(s)	230, 353, 1153
Sse9I	AATT	7 cut(s)	28, 61, 124, 209, 325, 713, 751
SsiI	CCGC	3 cut(s)	115, 280, 497
SspMI	CTAG	3 cut(s)	284, 348, 560
StyD4I	CCNGG	1 cut(s)	33
TaaI	ACNGT	2 cut(s)	77, 1101
TaiI	ACGT	1 cut(s)	344
TaqI	TCGA	2 cut(s)	448, 741
TasI	AATT	7 cut(s)	28, 61, 124, 209, 325, 713, 751
TatI	WGTACW	3 cut(s)	24, 257, 395
TauI	GCSGC	1 cut(s)	283
TfiI	GAWTC	2 cut(s)	738, 925
Tru1I	TTAA	5 cut(s)	423, 480, 711, 968, 1056
Tru9I	TTAA	5 cut(s)	423, 480, 711, 968, 1056
TscAI	CASTG	2 cut(s)	96, 528
TseI	GCWGC	2 cut(s)	383, 851
TspDTI	ATGAA	6 cut(s)	280, 429, 486, 924, 1100, 1110
TspGWI	ACGGA	1 cut(s)	883
TspRI	CASTG	2 cut(s)	96, 528
XapI	RAATTY	1 cut(s)	209
XceI	RCATGY	1 cut(s)	941
XmnI	GAANNNNTTC	1 cut(s)	885
XspI	CTAG	3 cut(s)	284, 348, 560
ZrmI	AGTACT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.