Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001141

Physical Location & Seq

Genomic Coordinates Forward (+)

35593332 .. 35595860

Gene Structure 2529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31941

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGTCTTTCGTTTTCCTTTTGTTGTTGAAAACCTCATCCACCAACAACGTTTGCAAAATGAACGGAGGATCTTACGAGAAAATCCCCACCGTGACACCAGTCGACCTCCACACGCCGTCACCGGAAATGAAAGAATCGGTGGAAGCCGTGGAGCGGATCGTACACTATGACCTCAACAACAAGAAGCTTCTAGAGGAAGCTCTCACCCACCCCTCATTCCGCGCAAGCGACGCCGTTTCGTATCAGCGGCTGGCGTTCCTAGGCGACGCCGTTCTTGGCCTCGCTGTAAGTAATTACCTCTTTCATGTTTACCCTGGAATTGACCAAGGTGGCCTCACTGAGCTACGCTCCGCTAACGTCAGCAAAGAGAGGTTCGCACGTGTCGCTGTGCGACATGGGCTTTATACCTACGTTCGCCGCACTGCAACTGCTGCTCTCGATGATCAGGTTAGGGAGTTTACTGAAGTTGTAAGCCGAGAAGAGGAGAAGACGCCGGTATATGGAGGTTCTGTAGAAGCCTCCAGAGTTCTTGCAGAGATTGTGGAGTCTCTGGCTGGTGCTATTTACGTTGACTTGAATTTTGATCTCGAAAAACTTTGGAAGATTTTTAGGCATGTTTTGGAGACTATAGTTACTATTGAAGAGTTGCAGCAACAACCTCACCCCGTCACAAAGTTGCATCAGTTTTGTCAGAAGCACGGGAAGCTTGCCAAGATCGAGTGCGAGAGAGATGAGACCAAGAGTACTGCGAATGTGTATGTTGATGGCATGTTTGTTGCCTCGGGTTCTTCTGAACAGAAAAAAATTGCTGAGGTCAGTGCTGCTGAGATGGCTCTGTGTAACTTGATGCAATCGATGTGCACGAATGATGCGTCGGTTGAAGATGCTGCTGGAATTGATGGGTCATTTCCTGTTGAAAGAGCAAAAAATGAGTTGCATAATCTTTGTGCCAAGAAGAAGTGGCCTAAACCAATTTACACCATTGAGCATGAAGAAGGTCCTCCACACGTGAAGAAGTTTGTATCCAAGGTAACTATAGATGGTGTGCTATCTGTAACAGGAGATGAAAAGTCGAGACTGAAACATGCGAAGAATTCTGCTGCTTCTTTGATGATCCGCCGTCTGCAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM Ribonuclease_3 dsrm

Protein Analysis

377

Amino Acids

42.0

Weight (kDa)

6.25

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonucleas_3_3	PF14622	60 - 194	6.2e-20	Ribonuclease-III-like
Ribonuclease_3	PF00636	82 - 191	2.4e-21	Ribonuclease III domain
dsrm	PF00035	222 - 282	9e-11	Double-stranded RNA binding motif
DND1_DSRM	PF14709	307 - 375	1.2e-12	double strand RNA binding domain from DEAD END PROTEIN 1
dsrm	PF00035	308 - 375	2.9e-13	Double-stranded RNA binding motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20420
fragaria_vesca	FvH4_3g23250
malus_domestica	MD03G1196200.v1.1 MD11G1212500.v1.1
prunus_persica	Prupe.4G219200_v2.0.a1 Prupe.4G219200_v2.0.a1 Prupe.4G219400_v2.0.a1 Prupe.4G219400_v2.0.a1
pyrus_communis	pycom03g14830 pycom11g18750
rosa_chinensis	RchiOBHm_Chr5g0040511 RchiOBHm_Chr5g0040931 RchiOBHm_Chr5g0040941
rosa_laevigata	RLG00000033986 RLG00000034014 RLG00000034016 RLG00000034026
rosa_multiflora	Rmu_co8051550.1_g000001 Rmu_co8392905.1_g000001 Rmu_sc0002475.1_g000019 Rmu_sc0002848.1_g000007 Rmu_sc0006651.1_g000007 Rmu_sc0006651.1_g000008 Rmu_sc0008620.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039580 Rroxscaffold_1G00039750 Rroxscaffold_1G00039760 Rroxscaffold_1G00040130 Rroxscaffold_1G00040850
rosa_rugosa	Rorug02G0350900 Rorug02G0350900 Rorug02G0351000 Rorug05G0185500 Rorug05G0188700 Rorug05G0188900 Rorug05G0188900
rosa_samantha	Rh2AG398700 Rh2BG409100 Rh2CG385500 Rh2CG540800 Rh2DG418900 Rh5AG272400 Rh5AG274300 Rh5AG274400 Rh5AG344200 Rh5BG276400 Rh5BG279300 Rh5BG279400 Rh5CG308900 Rh5CG311400 Rh5CG311600 Rh5DG284900 Rh5DG287500
rosa_wichuraiana	Rw2G032480 Rw5G025510 Rw5G025770 Rw5G025780 Rw5G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	154
AccI	GTMKAC	1 cut(s)	102
AccII	CGCG	1 cut(s)	222
AciI	CCGC	6 cut(s)	154, 220, 247, 351, 418, 1117
AclI	AACGTT	1 cut(s)	48
AclWI	GGATC	3 cut(s)	76, 164, 1108
AcsI	RAATTY	2 cut(s)	577, 1093
AcuI	CTGAAG	1 cut(s)	483
AcvI	CACGTG	2 cut(s)	380, 1009
AcyI	GRCGYC	3 cut(s)	231, 267, 491
AfaI	GTAC	2 cut(s)	162, 745
AfiI	CCNNNNNNNGG	3 cut(s)	153, 481, 500
AflIII	ACRYGT	2 cut(s)	379, 1006
AgsI	TTSAA	5 cut(s)	28, 577, 641, 881, 917
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	4 cut(s)	187, 200, 343, 706
AluI	AGCT	4 cut(s)	187, 200, 343, 706
Alw21I	GWGCWC	1 cut(s)	863
Alw26I	GTCTC	4 cut(s)	552, 617, 728, 1069
Alw44I	GTGCAC	1 cut(s)	859
AlwI	GGATC	3 cut(s)	76, 164, 1108
AlwNI	CAGNNNCTG	1 cut(s)	250
Ama87I	CYCGRG	1 cut(s)	781
AoxI	GGCC	3 cut(s)	277, 331, 962
ApaLI	GTGCAC	1 cut(s)	859
ApeKI	GCWGC	5 cut(s)	431, 649, 821, 887, 1100
ApoI	RAATTY	2 cut(s)	577, 1093
ArsI	GACNNNNNNTTYG	4 cut(s)	563, 595, 857, 889
AspA2I	CCTAGG	1 cut(s)	259
AspLEI	GCGC	1 cut(s)	224
AspS9I	GGNCC	1 cut(s)	998
AsuHPI	GGTGA	3 cut(s)	111, 196, 653
AvaI	CYCGRG	1 cut(s)	781
AvaII	GGWCC	1 cut(s)	998
AvrII	CCTAGG	1 cut(s)	259
BaeGI	GKGCMC	1 cut(s)	863
BbrPI	CACGTG	2 cut(s)	380, 1009
BbsI	GAAGAC	1 cut(s)	494
Bbv12I	GWGCWC	1 cut(s)	863
BbvCI	CCTCAGC	1 cut(s)	810
BbvI	GCAGC	5 cut(s)	418, 661, 808, 874, 1087
BccI	CCATC	4 cut(s)	758, 823, 893, 1034
BceAI	ACGGC	5 cut(s)	100, 131, 218, 254, 1104
BciT130I	CCWGG	1 cut(s)	315
BciVI	GTATCC	1 cut(s)	1033
BclI	TGATCA	1 cut(s)	442
BcoDI	GTCTC	4 cut(s)	552, 617, 728, 1069
BfaI	CTAG	2 cut(s)	191, 260
BfmI	CTRYAG	3 cut(s)	510, 627, 1035
BfuI	GTATCC	1 cut(s)	1033
BisI	GCNGC	7 cut(s)	248, 418, 432, 650, 822, 888, 1101
BlnI	CCTAGG	1 cut(s)	259
BlsI	GCNGC	7 cut(s)	249, 419, 433, 651, 823, 889, 1102
BmcAI	AGTACT	1 cut(s)	745
Bme1390I	CCNGG	1 cut(s)	315
Bme18I	GGWCC	1 cut(s)	998
BmeT110I	CYCGRG	1 cut(s)	781
BmgT120I	GGNCC	1 cut(s)	998
BmrFI	CCNGG	1 cut(s)	315
BmsI	GCATC	4 cut(s)	688, 837, 859, 874
BoxI	GACNNNNGTC	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	494
BplI	GAGNNNNNCTC	2 cut(s)	332, 364
BpmI	CTGGAG	1 cut(s)	505
Bpu10I	CCTNAGC	1 cut(s)	810
Bsa29I	ATCGAT	1 cut(s)	854
BsaAI	YACGTR	2 cut(s)	380, 1009
BsaHI	GRCGYC	3 cut(s)	231, 267, 491
BsaI	GGTCTC	1 cut(s)	728
BsaJI	CCNNGG	6 cut(s)	147, 259, 313, 325, 780, 1026
BsaWI	WCCGGW	1 cut(s)	121
BsaXI	ACNNNNNCTCC	2 cut(s)	495, 525
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 481, 500
Bse118I	RCCGGY	1 cut(s)	493
Bse1I	ACTGG	1 cut(s)	98
BseBI	CCWGG	1 cut(s)	315
BseCI	ATCGAT	1 cut(s)	854
BseDI	CCNNGG	6 cut(s)	147, 259, 313, 325, 780, 1026
BseGI	GGATG	1 cut(s)	35
BseLI	CCNNNNNNNGG	3 cut(s)	153, 481, 500
BseMII	CTCAG	3 cut(s)	330, 801, 816
BseNI	ACTGG	1 cut(s)	98
BseRI	GAGGAG	1 cut(s)	497
BseSI	GKGCMC	1 cut(s)	863
BseXI	GCAGC	5 cut(s)	418, 661, 808, 874, 1087
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	3 cut(s)	279, 333, 964
BshVI	ATCGAT	1 cut(s)	854
BsiHKAI	GWGCWC	1 cut(s)	863
BsiHKCI	CYCGRG	1 cut(s)	781
BsiSI	CCGG	2 cut(s)	122, 494
BslI	CCNNNNNNNGG	3 cut(s)	153, 481, 500
BsmAI	GTCTC	4 cut(s)	552, 617, 728, 1069
BsnI	GGCC	3 cut(s)	279, 333, 964
Bso31I	GGTCTC	1 cut(s)	728
BsoBI	CYCGRG	1 cut(s)	781
Bsp1286I	GDGCHC	1 cut(s)	863
Bsp143I	GATC	6 cut(s)	68, 156, 442, 583, 714, 1113
BspACI	CCGC	6 cut(s)	154, 220, 247, 351, 418, 1117
BspANI	GGCC	3 cut(s)	279, 333, 964
BspCNI	CTCAG	3 cut(s)	331, 802, 817
BspDI	ATCGAT	1 cut(s)	854
BspFNI	CGCG	1 cut(s)	222
BspPI	GGATC	3 cut(s)	76, 164, 1108
BspTNI	GGTCTC	1 cut(s)	728
BsrBI	CCGCTC	1 cut(s)	154
BsrFI	RCCGGY	1 cut(s)	493
BsrI	ACTGG	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	493
BssECI	CCNNGG	6 cut(s)	147, 259, 313, 325, 780, 1026
BssMI	GATC	6 cut(s)	68, 156, 442, 583, 714, 1113
BssNI	GRCGYC	3 cut(s)	231, 267, 491
BssT1I	CCWWGG	3 cut(s)	259, 325, 1026
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	1 cut(s)	91
Bst6I	CTCTTC	2 cut(s)	474, 636
BstACI	GRCGYC	3 cut(s)	231, 267, 491
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstBAI	YACGTR	2 cut(s)	380, 1009
BstC8I	GCNNGC	3 cut(s)	226, 252, 708
BstDEI	CTNAG	3 cut(s)	339, 810, 825
BstDSI	CCRYGG	1 cut(s)	147
BstF5I	GGATG	1 cut(s)	35
BstFNI	CGCG	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	6 cut(s)	71, 159, 445, 586, 717, 1116
BstMAI	GTCTC	4 cut(s)	552, 617, 728, 1069
BstMBI	GATC	6 cut(s)	68, 156, 442, 583, 714, 1113
BstMWI	GCNNNNNNNGC	6 cut(s)	230, 383, 397, 431, 703, 830
BstNI	CCWGG	1 cut(s)	315
BstNSI	RCATGY	3 cut(s)	617, 772, 1088
BstPAI	GACNNNNGTC	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	313
BstSFI	CTRYAG	3 cut(s)	510, 627, 1035
BstSLI	GKGCMC	1 cut(s)	863
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	5 cut(s)	418, 661, 808, 874, 1087
BstV2I	GAAGAC	1 cut(s)	494
BstX2I	RGATCY	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	68
Bsu15I	ATCGAT	1 cut(s)	854
BsuI	GTATCC	1 cut(s)	1033
BsuRI	GGCC	3 cut(s)	279, 333, 964
BsuTUI	ATCGAT	1 cut(s)	854
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	35
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	3 cut(s)	336, 420, 823
Cac8I	GCNNGC	3 cut(s)	226, 252, 708
CaiI	CAGNNNCTG	1 cut(s)	250
CfoI	GCGC	1 cut(s)	224
Cfr10I	RCCGGY	1 cut(s)	493
Cfr13I	GGNCC	1 cut(s)	998
ClaI	ATCGAT	1 cut(s)	854
CseI	GACGC	4 cut(s)	239, 275, 499, 861
Csp6I	GTAC	2 cut(s)	161, 744
CviAII	CATG	6 cut(s)	305, 395, 614, 769, 989, 1085
CviQI	GTAC	2 cut(s)	161, 744
DdeI	CTNAG	3 cut(s)	339, 810, 825
DpnI	GATC	6 cut(s)	70, 158, 444, 585, 716, 1115
DpnII	GATC	6 cut(s)	68, 156, 442, 583, 714, 1113
Eam1104I	CTCTTC	2 cut(s)	474, 636
EarI	CTCTTC	2 cut(s)	474, 636
EciI	GGCGGA	1 cut(s)	1106
Eco130I	CCWWGG	3 cut(s)	259, 325, 1026
Eco31I	GGTCTC	1 cut(s)	728
Eco47I	GGWCC	1 cut(s)	998
Eco57I	CTGAAG	1 cut(s)	483
Eco72I	CACGTG	2 cut(s)	380, 1009
Eco88I	CYCGRG	1 cut(s)	781
EcoO109I	RGGNCCY	1 cut(s)	998
EcoRI	GAATTC	1 cut(s)	1093
EcoRII	CCWGG	1 cut(s)	313
EcoT14I	CCWWGG	3 cut(s)	259, 325, 1026
ErhI	CCWWGG	3 cut(s)	259, 325, 1026
FaeI	CATG	6 cut(s)	308, 398, 617, 772, 992, 1088
FatI	CATG	6 cut(s)	304, 394, 613, 768, 988, 1084
FbaI	TGATCA	1 cut(s)	442
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	7 cut(s)	248, 418, 432, 650, 822, 888, 1101
FokI	GGATG	1 cut(s)	22
Fsp4HI	GCNGC	7 cut(s)	248, 418, 432, 650, 822, 888, 1101
FspBI	CTAG	2 cut(s)	191, 260
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	7 cut(s)	248, 418, 432, 650, 822, 888, 1101
GsuI	CTGGAG	1 cut(s)	505
HaeIII	GGCC	3 cut(s)	279, 333, 964
HapII	CCGG	2 cut(s)	122, 494
HgaI	GACGC	4 cut(s)	239, 275, 499, 861
HhaI	GCGC	1 cut(s)	224
Hin1I	GRCGYC	3 cut(s)	231, 267, 491
Hin1II	CATG	6 cut(s)	308, 398, 617, 772, 992, 1088
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HincII	GTYRAC	2 cut(s)	103, 571
HindII	GTYRAC	2 cut(s)	103, 571
HindIII	AAGCTT	2 cut(s)	185, 704
HinfI	GANTC	2 cut(s)	134, 545
HpaII	CCGG	2 cut(s)	122, 494
HphI	GGTGA	3 cut(s)	111, 196, 653
Hpy166II	GTNNAC	6 cut(s)	103, 163, 310, 459, 571, 861
Hpy188I	TCNGA	2 cut(s)	693, 793
Hpy188III	TCNNGA	5 cut(s)	191, 437, 522, 587, 1074
Hpy8I	GTNNAC	6 cut(s)	103, 163, 310, 459, 571, 861
Hpy99I	CGWCG	3 cut(s)	233, 269, 877
HpyAV	CCTTC	1 cut(s)	989
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4IV	ACGT	6 cut(s)	48, 357, 379, 411, 567, 1008
HpyCH4V	TGCA	9 cut(s)	54, 425, 533, 649, 679, 850, 861, 937, 1126
HpyF10VI	GCNNNNNNNGC	6 cut(s)	230, 383, 397, 431, 703, 830
HpyF3I	CTNAG	3 cut(s)	339, 810, 825
HpySE526I	ACGT	6 cut(s)	48, 357, 379, 411, 567, 1008
Hsp92I	GRCGYC	3 cut(s)	231, 267, 491
Hsp92II	CATG	6 cut(s)	308, 398, 617, 772, 992, 1088
HspAI	GCGC	1 cut(s)	222
Ksp22I	TGATCA	1 cut(s)	442
Kzo9I	GATC	6 cut(s)	68, 156, 442, 583, 714, 1113
LmnI	GCTCC	2 cut(s)	151, 353
Lsp1109I	GCAGC	5 cut(s)	418, 661, 808, 874, 1087
LweI	GCATC	4 cut(s)	688, 837, 859, 874
MaeI	CTAG	2 cut(s)	191, 260
MaeII	ACGT	6 cut(s)	48, 357, 379, 411, 567, 1008
MaeIII	GTNAC	7 cut(s)	91, 117, 631, 667, 839, 1030, 1054
MalI	GATC	6 cut(s)	70, 158, 444, 585, 716, 1115
MbiI	CCGCTC	1 cut(s)	154
MboI	GATC	6 cut(s)	68, 156, 442, 583, 714, 1113
MflI	RGATCY	1 cut(s)	68
MhlI	GDGCHC	1 cut(s)	863
MluCI	AATT	7 cut(s)	292, 318, 577, 804, 894, 972, 1093
MlyI	GAGTC	1 cut(s)	554
MspA1I	CMGCKG	1 cut(s)	247
MspI	CCGG	2 cut(s)	122, 494
MspR9I	CCNGG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	315
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	6 cut(s)	230, 383, 397, 431, 703, 830
NdeII	GATC	6 cut(s)	68, 156, 442, 583, 714, 1113
NlaIII	CATG	6 cut(s)	308, 398, 617, 772, 992, 1088
NmeAIII	GCCGAG	1 cut(s)	500
NmuCI	GTSAC	3 cut(s)	91, 117, 667
NspI	RCATGY	3 cut(s)	617, 772, 1088
PcsI	WCGNNNNNNNCGW	2 cut(s)	860, 869
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	7 cut(s)	249, 419, 433, 651, 823, 889, 1102
PleI	GAGTC	1 cut(s)	553
PmaCI	CACGTG	2 cut(s)	380, 1009
PmlI	CACGTG	2 cut(s)	380, 1009
PpsI	GAGTC	1 cut(s)	553
Ppu21I	YACGTR	2 cut(s)	380, 1009
PpuMI	RGGWCCY	1 cut(s)	998
PshAI	GACNNNNGTC	1 cut(s)	98
Psp1406I	AACGTT	1 cut(s)	48
Psp5II	RGGWCCY	1 cut(s)	998
Psp6I	CCWGG	1 cut(s)	313
PspCI	CACGTG	2 cut(s)	380, 1009
PspGI	CCWGG	1 cut(s)	313
PspPI	GGNCC	1 cut(s)	998
PspPPI	RGGWCCY	1 cut(s)	998
PstNI	CAGNNNCTG	1 cut(s)	250
PsuI	RGATCY	1 cut(s)	68
RsaI	GTAC	2 cut(s)	162, 745
RsaNI	GTAC	2 cut(s)	161, 744
SalI	GTCGAC	1 cut(s)	101
SatI	GCNGC	7 cut(s)	248, 418, 432, 650, 822, 888, 1101
Sau3AI	GATC	6 cut(s)	68, 156, 442, 583, 714, 1113
Sau96I	GGNCC	1 cut(s)	998
ScaI	AGTACT	1 cut(s)	745
SchI	GAGTC	1 cut(s)	554
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	1 cut(s)	863
SfaNI	GCATC	4 cut(s)	688, 837, 859, 874
SfcI	CTRYAG	3 cut(s)	510, 627, 1035
SinI	GGWCC	1 cut(s)	998
Sse9I	AATT	7 cut(s)	292, 318, 577, 804, 894, 972, 1093
SsiI	CCGC	6 cut(s)	154, 220, 247, 351, 418, 1117
SspMI	CTAG	2 cut(s)	191, 260
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	3 cut(s)	259, 325, 1026
TaaI	ACNGT	1 cut(s)	91
TaiI	ACGT	6 cut(s)	51, 360, 382, 414, 570, 1011
TaqI	TCGA	6 cut(s)	102, 438, 588, 717, 854, 1073
TasI	AATT	7 cut(s)	292, 318, 577, 804, 894, 972, 1093
TatI	WGTACW	1 cut(s)	743
TauI	GCSGC	2 cut(s)	250, 420
TfiI	GAWTC	1 cut(s)	134
TscAI	CASTG	3 cut(s)	343, 427, 823
TseFI	GTSAC	3 cut(s)	91, 117, 667
TseI	GCWGC	5 cut(s)	431, 649, 821, 887, 1100
Tsp45I	GTSAC	3 cut(s)	91, 117, 667
TspDTI	ATGAA	5 cut(s)	74, 143, 293, 1005, 1080
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	3 cut(s)	343, 427, 823
VneI	GTGCAC	1 cut(s)	859
VpaK11BI	GGWCC	1 cut(s)	998
XapI	RAATTY	2 cut(s)	577, 1093
XbaI	TCTAGA	1 cut(s)	190
XceI	RCATGY	3 cut(s)	617, 772, 1088
XmaJI	CCTAGG	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	102
XspI	CTAG	2 cut(s)	191, 260
ZrmI	AGTACT	1 cut(s)	745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.