Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001141

Physical Location & Seq

Genomic Coordinates Reverse (-)

36485506 .. 36487859

Gene Structure 2354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G025510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGTTGGAAAAGGGGATCTGGGAAGGATAGGAAAGCAAAAACAAAAGGGAAAGCATACCACCGTGGCACCACTCCGCCTGCCAGAAATGAAAAAATCGGTGGACGCCGTGGAGCGGATCCTAGACTATGACTTCAAGAACAAGAGGCTTCTAGAGGAAGCTCTCATCCACCCCTCCTGCCGAATAAGCGACGCCGTTTCGTATCAGCGGCTCGCGTTCCTCGGCGACACCGTTCTTGACCTCGCTGTAAGGAAAGACCTCTTCCTTGCTTACCCTGTAATTGACCAAGGCGACCTCACTCGGCTACGCTCCGCTAACGTCAGCAACGAGAAGTTCGCACGTGTGGCTGTGAGACATGGGCTTTATAACTACCTTCGCTGCACTGCAACTCGTGCTCTCGATGTTCAGGTTACTGAAGCTATAAGACGAGAAGAGGAGAAGACGCCTGTATTTGGACGGTCTGTAGAAGCCCCTAAAGTTCTTGCAGATATTGTGGAGTCTGTGGCTGGTGCTATTTATTTTGACTTGAATTTTGATCTGAAACTACTTTGGATGTTGCAGCAACAACCTCGTCCTGTGACAGAGTTGCAGCAACAACCTCATCCTGTGACAGAGTTGCATCAACTTTGCCAGAAGCAGGGGAAGAATGTCAGTATCGAGTACGGGAGAGGTAAGATGAAGAGTAATATTGATGGGAAGTGTGTTGCCTTGGGTTCGGCTGAACAGAAAGGAAGTGCTATAGTCAATGCTGCTGAGATGGCTCTGAGGAAGTTGATTTATGATGCGCTGGTTGAAGTTATTGCTGAAATCGATCAGCCATTTTCTGTTAAAAAAGCAAAAGATGAGTTGCATAAGATTTGTGTCGAGAAGAGGTGGCCTGAACCAATTTACACCATTGAGCATGAAGAAGGTCCTCCACATGATAAGATGTTTAAATCGATGGTAACTATAGGTCTGGTATATATGATTGGAAATGCAAAGTCAAGAGTAAAAGATGCGGAGAACTCTGTAGCTTTTCTGATGATCCGCTCATTGCAAGACCCTAAAAATGTACGTATGAAACACCTCTGTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM Ribonuclease_3 dsrm

Protein Analysis

358

Amino Acids

40.4

Weight (kDa)

9.1

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonucleas_3_3	PF14622	47 - 176	9.6e-17	Ribonuclease-III-like
Ribonuclease_3	PF00636	69 - 175	8.4e-23	Ribonuclease III domain
DND1_DSRM	PF14709	278 - 345	2e-07	double strand RNA binding domain from DEAD END PROTEIN 1
dsrm	PF00035	279 - 345	3e-11	Double-stranded RNA binding motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20420
fragaria_vesca	FvH4_3g23250
malus_domestica	MD03G1196200.v1.1 MD11G1212500.v1.1
prunus_persica	Prupe.4G219200_v2.0.a1 Prupe.4G219200_v2.0.a1 Prupe.4G219400_v2.0.a1 Prupe.4G219400_v2.0.a1
pyrus_communis	pycom03g14830 pycom11g18750
rosa_chinensis	RchiOBHm_Chr5g0040511 RchiOBHm_Chr5g0040931 RchiOBHm_Chr5g0040941
rosa_laevigata	RLG00000033986 RLG00000034014 RLG00000034016 RLG00000034026
rosa_multiflora	Rmu_co8051550.1_g000001 Rmu_co8392905.1_g000001 Rmu_sc0002475.1_g000019 Rmu_sc0002848.1_g000007 Rmu_sc0006651.1_g000007 Rmu_sc0006651.1_g000008 Rmu_sc0008620.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039580 Rroxscaffold_1G00039750 Rroxscaffold_1G00039760 Rroxscaffold_1G00040130 Rroxscaffold_1G00040850
rosa_rugosa	Rorug02G0350900 Rorug02G0350900 Rorug02G0351000 Rorug05G0185500 Rorug05G0188700 Rorug05G0188900 Rorug05G0188900
rosa_samantha	Rh2AG398700 Rh2BG409100 Rh2CG385500 Rh2CG540800 Rh2DG418900 Rh5AG272400 Rh5AG274300 Rh5AG274400 Rh5AG344200 Rh5BG276400 Rh5BG279300 Rh5BG279400 Rh5CG308900 Rh5CG311400 Rh5CG311600 Rh5DG284900 Rh5DG287500
rosa_wichuraiana	Rw2G032480 Rw5G025510 Rw5G025770 Rw5G025780 Rw5G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	366
AccB1I	GGYRCC	1 cut(s)	67
AccBSI	CCGCTC	2 cut(s)	115, 1029
AccII	CGCG	1 cut(s)	215
AciI	CCGC	6 cut(s)	76, 115, 208, 312, 998, 1027
AclWI	GGATC	4 cut(s)	24, 112, 125, 1018
AcsI	RAATTY	1 cut(s)	529
AcuI	CTGAAG	1 cut(s)	435
AcvI	CACGTG	1 cut(s)	341
AcyI	GRCGYC	3 cut(s)	105, 192, 443
AfaI	GTAC	2 cut(s)	662, 1053
AfiI	CCNNNNNNNGG	3 cut(s)	114, 452, 637
AflIII	ACRYGT	1 cut(s)	340
AgsI	TTSAA	3 cut(s)	136, 529, 794
AleI	CACNNNNGTG	1 cut(s)	1068
AluBI	AGCT	3 cut(s)	161, 419, 1013
AluI	AGCT	3 cut(s)	161, 419, 1013
Alw21I	GWGCWC	1 cut(s)	397
Alw26I	GTCTC	1 cut(s)	346
AlwI	GGATC	4 cut(s)	24, 112, 125, 1018
AoxI	GGCC	1 cut(s)	875
ApeKI	GCWGC	4 cut(s)	378, 559, 589, 749
ApoI	RAATTY	1 cut(s)	529
ArsI	GACNNNNNNTTYG	2 cut(s)	515, 547
AspLEI	GCGC	1 cut(s)	787
AspS9I	GGNCC	1 cut(s)	911
AvaII	GGWCC	1 cut(s)	911
BamHI	GGATCC	1 cut(s)	117
BanI	GGYRCC	1 cut(s)	67
BauI	CACGAG	1 cut(s)	390
BbrPI	CACGTG	1 cut(s)	341
BbsI	GAAGAC	1 cut(s)	446
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	4 cut(s)	365, 571, 601, 736
BccI	CCATC	3 cut(s)	686, 751, 934
BceAI	ACGGC	2 cut(s)	92, 179
BcgI	CGANNNNNNTGC	2 cut(s)	551, 585
BcoDI	GTCTC	1 cut(s)	346
BfaI	CTAG	2 cut(s)	122, 152
BfmI	CTRYAG	4 cut(s)	462, 738, 948, 1008
BisI	GCNGC	5 cut(s)	209, 379, 560, 590, 750
BlsI	GCNGC	5 cut(s)	210, 380, 561, 591, 751
Bme18I	GGWCC	1 cut(s)	911
BmgT120I	GGNCC	1 cut(s)	911
BmiI	GGNNCC	2 cut(s)	69, 119
BmsI	GCATC	3 cut(s)	628, 772, 985
BpiI	GAAGAC	1 cut(s)	446
Bsa29I	ATCGAT	2 cut(s)	810, 938
BsaAI	YACGTR	2 cut(s)	341, 1055
BsaHI	GRCGYC	3 cut(s)	105, 192, 443
BsaJI	CCNNGG	5 cut(s)	63, 108, 220, 286, 708
Bsc4I	CCNNNNNNNGG	3 cut(s)	114, 452, 637
Bse3DI	GCAATG	1 cut(s)	1031
BseCI	ATCGAT	2 cut(s)	810, 938
BseDI	CCNNGG	5 cut(s)	63, 108, 220, 286, 708
BseGI	GGATG	3 cut(s)	165, 558, 601
BseLI	CCNNNNNNNGG	3 cut(s)	114, 452, 637
BseMI	GCAATG	1 cut(s)	1031
BseMII	CTCAG	2 cut(s)	744, 755
BseRI	GAGGAG	1 cut(s)	449
BseXI	GCAGC	4 cut(s)	365, 571, 601, 736
BsgI	GTGCAG	1 cut(s)	364
Bsh1236I	CGCG	1 cut(s)	215
BshFI	GGCC	1 cut(s)	877
BshNI	GGYRCC	1 cut(s)	67
BshVI	ATCGAT	2 cut(s)	810, 938
BsiHKAI	GWGCWC	1 cut(s)	397
BslI	CCNNNNNNNGG	3 cut(s)	114, 452, 637
BsmAI	GTCTC	1 cut(s)	346
BsnI	GGCC	1 cut(s)	877
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	5 cut(s)	16, 117, 535, 811, 1023
BspACI	CCGC	6 cut(s)	76, 115, 208, 312, 998, 1027
BspANI	GGCC	1 cut(s)	877
BspCNI	CTCAG	2 cut(s)	745, 756
BspDI	ATCGAT	2 cut(s)	810, 938
BspFNI	CGCG	1 cut(s)	215
BspLI	GGNNCC	2 cut(s)	69, 119
BspPI	GGATC	4 cut(s)	24, 112, 125, 1018
BspT107I	GGYRCC	1 cut(s)	67
BsrBI	CCGCTC	2 cut(s)	115, 1029
BsrDI	GCAATG	1 cut(s)	1031
BssECI	CCNNGG	5 cut(s)	63, 108, 220, 286, 708
BssMI	GATC	5 cut(s)	16, 117, 535, 811, 1023
BssNI	GRCGYC	3 cut(s)	105, 192, 443
BssSI	CACGAG	1 cut(s)	390
BssT1I	CCWWGG	2 cut(s)	286, 708
Bst2BI	CACGAG	1 cut(s)	390
Bst4CI	ACNGT	3 cut(s)	64, 232, 459
Bst6I	CTCTTC	4 cut(s)	266, 426, 674, 863
BstACI	GRCGYC	3 cut(s)	105, 192, 443
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstBAI	YACGTR	2 cut(s)	341, 1055
BstC8I	GCNNGC	2 cut(s)	80, 213
BstDEI	CTNAG	2 cut(s)	753, 764
BstDSI	CCRYGG	2 cut(s)	63, 108
BstF5I	GGATG	3 cut(s)	165, 558, 601
BstFNI	CGCG	1 cut(s)	215
BstHHI	GCGC	1 cut(s)	787
BstKTI	GATC	5 cut(s)	19, 120, 538, 814, 1026
BstMAI	GTCTC	1 cut(s)	346
BstMBI	GATC	5 cut(s)	16, 117, 535, 811, 1023
BstMWI	GCNNNNNNNGC	4 cut(s)	186, 344, 392, 758
BstSFI	CTRYAG	4 cut(s)	462, 738, 948, 1008
BstSNI	TACGTA	1 cut(s)	1055
BstUI	CGCG	1 cut(s)	215
BstV1I	GCAGC	4 cut(s)	365, 571, 601, 736
BstV2I	GAAGAC	1 cut(s)	446
BstX2I	RGATCY	2 cut(s)	16, 117
BstYI	RGATCY	2 cut(s)	16, 117
Bsu15I	ATCGAT	2 cut(s)	810, 938
BsuRI	GGCC	1 cut(s)	877
BsuTUI	ATCGAT	2 cut(s)	810, 938
BtgI	CCRYGG	2 cut(s)	63, 108
BtsCI	GGATG	3 cut(s)	165, 558, 601
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	1 cut(s)	381
Cac8I	GCNNGC	2 cut(s)	80, 213
CfoI	GCGC	1 cut(s)	787
Cfr13I	GGNCC	1 cut(s)	911
ClaI	ATCGAT	2 cut(s)	810, 938
CseI	GACGC	3 cut(s)	113, 200, 451
Csp6I	GTAC	2 cut(s)	661, 1052
CviAII	CATG	3 cut(s)	356, 902, 920
CviQI	GTAC	2 cut(s)	661, 1052
DdeI	CTNAG	2 cut(s)	753, 764
DpnI	GATC	5 cut(s)	18, 119, 537, 813, 1025
DpnII	GATC	5 cut(s)	16, 117, 535, 811, 1023
DraI	TTTAAA	1 cut(s)	934
Eam1104I	CTCTTC	4 cut(s)	266, 426, 674, 863
EarI	CTCTTC	4 cut(s)	266, 426, 674, 863
EciI	GGCGGA	1 cut(s)	65
Eco105I	TACGTA	1 cut(s)	1055
Eco130I	CCWWGG	2 cut(s)	286, 708
Eco47I	GGWCC	1 cut(s)	911
Eco57I	CTGAAG	1 cut(s)	435
Eco72I	CACGTG	1 cut(s)	341
EcoO109I	RGGNCCY	1 cut(s)	911
EcoT14I	CCWWGG	2 cut(s)	286, 708
ErhI	CCWWGG	2 cut(s)	286, 708
FaeI	CATG	3 cut(s)	359, 905, 923
FatI	CATG	3 cut(s)	355, 901, 919
Fnu4HI	GCNGC	5 cut(s)	209, 379, 560, 590, 750
FokI	GGATG	3 cut(s)	152, 565, 588
Fsp4HI	GCNGC	5 cut(s)	209, 379, 560, 590, 750
FspBI	CTAG	2 cut(s)	122, 152
GlaI	GCGC	1 cut(s)	786
GluI	GCNGC	5 cut(s)	209, 379, 560, 590, 750
HaeIII	GGCC	1 cut(s)	877
HgaI	GACGC	3 cut(s)	113, 200, 451
HhaI	GCGC	1 cut(s)	787
Hin1I	GRCGYC	3 cut(s)	105, 192, 443
Hin1II	CATG	3 cut(s)	359, 905, 923
Hin6I	GCGC	1 cut(s)	785
HinP1I	GCGC	1 cut(s)	785
HinfI	GANTC	1 cut(s)	497
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	3 cut(s)	540, 765, 1020
Hpy188III	TCNNGA	6 cut(s)	136, 152, 236, 398, 865, 984
Hpy8I	GTNNAC	1 cut(s)	103
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	3 cut(s)	18, 383, 902
HpyCH4III	ACNGT	3 cut(s)	64, 232, 459
HpyCH4IV	ACGT	3 cut(s)	318, 340, 1054
HpyCH4V	TGCA	9 cut(s)	381, 386, 485, 559, 589, 619, 850, 977, 1036
HpyF10VI	GCNNNNNNNGC	4 cut(s)	186, 344, 392, 758
HpyF3I	CTNAG	2 cut(s)	753, 764
HpySE526I	ACGT	3 cut(s)	318, 340, 1054
Hsp92I	GRCGYC	3 cut(s)	105, 192, 443
Hsp92II	CATG	3 cut(s)	359, 905, 923
HspAI	GCGC	1 cut(s)	785
Kzo9I	GATC	5 cut(s)	16, 117, 535, 811, 1023
LmnI	GCTCC	2 cut(s)	112, 314
Lsp1109I	GCAGC	4 cut(s)	365, 571, 601, 736
LweI	GCATC	3 cut(s)	628, 772, 985
MaeI	CTAG	2 cut(s)	122, 152
MaeII	ACGT	3 cut(s)	318, 340, 1054
MaeIII	GTNAC	4 cut(s)	409, 577, 607, 943
MalI	GATC	5 cut(s)	18, 119, 537, 813, 1025
MbiI	CCGCTC	2 cut(s)	115, 1029
MboI	GATC	5 cut(s)	16, 117, 535, 811, 1023
MboII	GAAGA	7 cut(s)	253, 443, 451, 655, 691, 880, 917
MflI	RGATCY	2 cut(s)	16, 117
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	3 cut(s)	279, 529, 885
MlyI	GAGTC	1 cut(s)	506
MseI	TTAA	2 cut(s)	828, 933
MslI	CAYNNNNRTG	1 cut(s)	1068
MspA1I	CMGCKG	1 cut(s)	208
MvnI	CGCG	1 cut(s)	215
MwoI	GCNNNNNNNGC	4 cut(s)	186, 344, 392, 758
NdeII	GATC	5 cut(s)	16, 117, 535, 811, 1023
NlaIII	CATG	3 cut(s)	359, 905, 923
NlaIV	GGNNCC	2 cut(s)	69, 119
NmeAIII	GCCGAG	2 cut(s)	201, 280
NmuCI	GTSAC	2 cut(s)	577, 607
OliI	CACNNNNGTG	1 cut(s)	1068
PcsI	WCGNNNNNNNCGW	2 cut(s)	228, 324
PkrI	GCNGC	5 cut(s)	210, 380, 561, 591, 751
PleI	GAGTC	1 cut(s)	505
PmaCI	CACGTG	1 cut(s)	341
PmlI	CACGTG	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	505
Ppu21I	YACGTR	2 cut(s)	341, 1055
PpuMI	RGGWCCY	1 cut(s)	911
PsiI	TTATAA	1 cut(s)	366
Psp5II	RGGWCCY	1 cut(s)	911
PspCI	CACGTG	1 cut(s)	341
PspN4I	GGNNCC	2 cut(s)	69, 119
PspPI	GGNCC	1 cut(s)	911
PspPPI	RGGWCCY	1 cut(s)	911
PsuI	RGATCY	2 cut(s)	16, 117
RsaI	GTAC	2 cut(s)	662, 1053
RsaNI	GTAC	2 cut(s)	661, 1052
RseI	CAYNNNNRTG	1 cut(s)	1068
SaqAI	TTAA	2 cut(s)	828, 933
SatI	GCNGC	5 cut(s)	209, 379, 560, 590, 750
Sau3AI	GATC	5 cut(s)	16, 117, 535, 811, 1023
Sau96I	GGNCC	1 cut(s)	911
SchI	GAGTC	1 cut(s)	506
SduI	GDGCHC	1 cut(s)	397
SfaNI	GCATC	3 cut(s)	628, 772, 985
SfcI	CTRYAG	4 cut(s)	462, 738, 948, 1008
SinI	GGWCC	1 cut(s)	911
SmiMI	CAYNNNNRTG	1 cut(s)	1068
SnaBI	TACGTA	1 cut(s)	1055
Sse9I	AATT	3 cut(s)	279, 529, 885
SsiI	CCGC	6 cut(s)	76, 115, 208, 312, 998, 1027
SspI	AATATT	1 cut(s)	688
SspMI	CTAG	2 cut(s)	122, 152
StyI	CCWWGG	2 cut(s)	286, 708
TaaI	ACNGT	3 cut(s)	64, 232, 459
TaiI	ACGT	3 cut(s)	321, 343, 1057
TaqI	TCGA	5 cut(s)	399, 657, 810, 864, 938
TasI	AATT	3 cut(s)	279, 529, 885
TauI	GCSGC	1 cut(s)	211
Tru1I	TTAA	2 cut(s)	828, 933
Tru9I	TTAA	2 cut(s)	828, 933
TscAI	CASTG	1 cut(s)	388
TseFI	GTSAC	2 cut(s)	577, 607
TseI	GCWGC	4 cut(s)	378, 559, 589, 749
Tsp45I	GTSAC	2 cut(s)	577, 607
TspDTI	ATGAA	4 cut(s)	104, 692, 918, 1073
TspRI	CASTG	1 cut(s)	388
VpaK11BI	GGWCC	1 cut(s)	911
XapI	RAATTY	1 cut(s)	529
XbaI	TCTAGA	1 cut(s)	151
XspI	CTAG	2 cut(s)	122, 152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.