Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001141

Physical Location & Seq

Genomic Coordinates Forward (+)

18345875 .. 18353256

Gene Structure 7382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0188700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2472 bp

ATGGAGAGGTTTGAGAGTGGGAGTAGTATTCAGGAGGCGCCCTGTTCTATTCCTCAGGATCTCAACCAATTTGGAGTTAATTCTTCAGGCGAGGTATTCGATGCATCACAATATGCATTTTTTGGTCAAGATTCTGTTCAGGAAGTTGAGTTGGGAGGTTTAGAAGATGAAGAGGAGACTGCAGTTGCTCTTGAAGAGGAGGAGTTTCTATATAACAAAGAAGAGGGTGGTGTCTCTCTATCTGATGCTGATGATCTGTCTTTAACTTTTGAAAAGTTGAACAAGGATGTAAATGGAACTAGGAGCACTGGAATAATTGGTGATAGAGGATCCAGAGAAAGTTCATCTGCTGCTGAATGGGTGCAGGAAAGTTTCCCTAACTGGATTGATGAAGAAATATTTGATGCTGAAAGCATTCAAGATGGGAAAAGATGGTCTTCAGGACCGTTTTCTTCTATTCGTCCTACAGAAGCAAAGCCTTTGTACAGAACTTCTTCATATCCTGAGCCCCCACAGCTGCCACAGCAGCAGCAACAACAACATCAATATTTTTCTAGCGAACCAATTCTGGTGCCAAAATCTTCTTTTACTTCATATCCACCTCCAGGTGGCAGATCTCAGCAGGGTTCACCTAACCACCAATCAGGCCACATGAATATTCCTTATGCTGCTGGTGGACCTCAGGGGGGAATATCTTCACCAAACCTTTCTCCCTACTCTAACTCTCCACTTCAAATGACTGGGTTACCTCATGGATCACATTTTGGTGGAAATTTGCCTCATCTGACTCCGGGTCTTCCTGTTAATACTCGTCCCCTTACTCAATGGGCCAACCAAAGTGGCTCATTTGGAGATCATCCTAGTCATTTAAATAATCTGTTGCAGCAACAGTTATCTCATCAGAATGGTTTGCCTCCACAGTTGATGCATCAGCCACAGCAGCCGCATCCTAGACTGCACCATCCAGTTCAGCAACCATTCAGCCATATGTCAGCAATGCAGTCTCAACTATTTAACCCCCACCTTCCTCCATCCCCACCCTTGATGAACAAGTTTGAAGCAATGTTCGGTATGAGTGATATTAGAGATGAAAGGTCAAGATTAGCTCAGAAAGGTAGACAGAATATGCGTTTTTCTCAACATGGCTTTGATACAGGTAGCTACAAAAGTGGTGGTGGGTGGCCATCATTTAGGTCCAAGTATATGACAGCTGATGAAATTGAGGGTATACTTCGAATGCAGCTTGCTGCAACACACAGCAATGACCCATATGTAGATGATTATTACCACCAGTATTGCCTTGCAAGAAAATCTGCTGGGGCGAAGTTGAAACATCATTTCTGTCCAACTCATTTAAGGGATCTTCCTCCTCGGGCACGAGCTAATGCTGAACCACATGCTTTTCTCCAAGTTGATGCTCTTGGGAGGGTCCCATTCTCTTCAATACGCAGGCCTCGCCCTCTTCTTGAAGTGGAGCCACCAAATTCATCTAGTCCGGGCAACACTGAACAGAAGGTTTCTGAGAAGCCTCTAGAACAGGAGCCAATGCTTGCTGCTAGGGTTACAATTGAGGATGGACTTTGTCTTCTCCTGGATGTGGATGATATCGATCGTTTTTTACAATTCAATCAGCTCCAAGATGGTGGAACCCAGTTGAGGCGTAGGCGTCAGGGCTTGCTAGAAGGGCTCGCAGCATCTCTACAATTGGTTGATCCACTTGGGAAAAATGACCACACAGATGGGCTTGCTCTCAAGGATGATCTTGTGTTCCTGAGGTTAGTCTCTCTACCCAAGGGCCGAAAGCTTCTTGTCAAGTACCTACGGCTTCTTTTTCCAGGTGGTGAGCTCATGCGAATAGTCTGTATGGCCATCTTCCGCCATTTAAGGTTCTTGTTTGGTATCCTCCCTTCTGATCCAAGGGCTGCAGAAACTACAAATAATATCGCTAGGGTTGTTTCATCATGTGTTCGAGATATGGACCTTGGTGCACTTAGTGCTTGTCTAGCAGCAGTGGTTTGTTCCTCGGAGCAACCCCCGCTTCGTCCCATTGGAAGCTCTGCAGGAGATGGTGCTTCCCTTATTCTGAATGCTGTTCTTGATAGGGCAACTGAACTCTTAACTGATCCTAATGCTGCTAGCAACTACAATATGACTAATCGGGCACTTTGGCAGGCCTCCTTTGATCAATTCTTTGGCCTTCTGACCAAGTATTGTGTAAACAAGTATGATACTATAATGCAGTCACTGCTAATGCAGGCCCCCACGAATATGGCTGTTATTGGCTCAGATGCAGCCAGAGCTATTAGTCGTGAAATGCCAGTTGAGCTGCTGCGTGCGAGTCTTCCTCACACCGATGATCACCAGAGACAGTTGCTCTTAGATTTCACGCAGCGGTCCATGCCTGTGGGAGGATCTAACAATCACGATGGGGGAAATGGTGCCCACATAAATTCAGAGTCTGTGCTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM Ribonuclease_3 dsrm

Protein Analysis

823

Amino Acids

90.86

Weight (kDa)

5.69

Isoelectric Point (pI)

61.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20420
fragaria_vesca	FvH4_3g23250
malus_domestica	MD03G1196200.v1.1 MD11G1212500.v1.1
prunus_persica	Prupe.4G219200_v2.0.a1 Prupe.4G219200_v2.0.a1 Prupe.4G219400_v2.0.a1 Prupe.4G219400_v2.0.a1
pyrus_communis	pycom03g14830 pycom11g18750
rosa_chinensis	RchiOBHm_Chr5g0040511 RchiOBHm_Chr5g0040931 RchiOBHm_Chr5g0040941
rosa_laevigata	RLG00000033986 RLG00000034014 RLG00000034016 RLG00000034026
rosa_multiflora	Rmu_co8051550.1_g000001 Rmu_co8392905.1_g000001 Rmu_sc0002475.1_g000019 Rmu_sc0002848.1_g000007 Rmu_sc0006651.1_g000007 Rmu_sc0006651.1_g000008 Rmu_sc0008620.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039580 Rroxscaffold_1G00039750 Rroxscaffold_1G00039760 Rroxscaffold_1G00040130 Rroxscaffold_1G00040850
rosa_rugosa	Rorug02G0350900 Rorug02G0350900 Rorug02G0351000 Rorug05G0185500 Rorug05G0188700 Rorug05G0188900 Rorug05G0188900
rosa_samantha	Rh2AG398700 Rh2BG409100 Rh2CG385500 Rh2CG540800 Rh2DG418900 Rh5AG272400 Rh5AG274300 Rh5AG274400 Rh5AG344200 Rh5BG276400 Rh5BG279300 Rh5BG279400 Rh5CG308900 Rh5CG311400 Rh5CG311600 Rh5DG284900 Rh5DG287500
rosa_wichuraiana	Rw2G032480 Rw5G025510 Rw5G025770 Rw5G025780 Rw5G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	37, 571, 2438
AccI	GTMKAC	2 cut(s)	1117, 1228
AciI	CCGC	4 cut(s)	944, 1876, 2036, 2392
AclWI	GGATC	9 cut(s)	66, 324, 337, 763, 1368, 1706, 1907, 2117, 2419
AcoI	YGGCCR	2 cut(s)	1181, 1866
AcsI	RAATTY	3 cut(s)	772, 1483, 2449
AcuI	CTGAAG	2 cut(s)	69, 423
AcyI	GRCGYC	2 cut(s)	38, 1666
AdeI	CACNNNGTG	1 cut(s)	1994
AfaI	GTAC	2 cut(s)	485, 1817
AfiI	CCNNNNNNNGG	6 cut(s)	605, 608, 686, 1597, 1656, 2408
AhdI	GACNNNNNGTC	1 cut(s)	792
AjnI	CCWGG	3 cut(s)	604, 1590, 1834
Alw21I	GWGCWC	3 cut(s)	308, 1848, 1990
Alw26I	GTCTC	5 cut(s)	170, 238, 1008, 1786, 2359
Alw44I	GTGCAC	1 cut(s)	1986
AlwI	GGATC	9 cut(s)	66, 324, 337, 763, 1368, 1706, 1907, 2117, 2419
AlwNI	CAGNNNCTG	2 cut(s)	2245, 2459
Ama87I	CYCGRG	1 cut(s)	1371
AoxI	GGCC	9 cut(s)	646, 828, 1181, 1451, 1795, 1866, 2172, 2194, 2256
ApaLI	GTGCAC	1 cut(s)	1986
ApoI	RAATTY	3 cut(s)	772, 1483, 2449
Asp700I	GAANNNNTTC	4 cut(s)	414, 493, 564, 694
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	9 cut(s)	443, 677, 828, 1194, 1429, 1795, 1978, 2257, 2394
AsuC2I	CCSGG	2 cut(s)	792, 1497
AsuHPI	GGTGA	5 cut(s)	332, 621, 690, 1853, 2351
AsuII	TTCGAA	1 cut(s)	1234
AsuNHI	GCTAGC	1 cut(s)	2135
AvaI	CYCGRG	1 cut(s)	1371
AvaII	GGWCC	6 cut(s)	443, 677, 1194, 1429, 1978, 2394
AxyI	CCTNAGG	3 cut(s)	54, 681, 1772
BaeGI	GKGCMC	4 cut(s)	1378, 1990, 2164, 2443
BalI	TGGCCA	2 cut(s)	1183, 1868
BamHI	GGATCC	1 cut(s)	329
BanI	GGYRCC	3 cut(s)	37, 571, 2438
BanII	GRGCYC	3 cut(s)	510, 1689, 1848
BarI	GAAGNNNNNNTAC	2 cut(s)	1891, 1923
BauI	CACGAG	1 cut(s)	1377
BbsI	GAAGAC	4 cut(s)	429, 788, 1577, 2333
Bbv12I	GWGCWC	3 cut(s)	308, 1848, 1990
BceAI	ACGGC	1 cut(s)	1838
BciT130I	CCWGG	3 cut(s)	606, 1592, 1836
BciVI	GTATCC	1 cut(s)	1910
BclI	TGATCA	2 cut(s)	2182, 2356
BcnI	CCSGG	2 cut(s)	792, 1497
BcoDI	GTCTC	5 cut(s)	170, 238, 1008, 1786, 2359
BfmI	CTRYAG	4 cut(s)	180, 465, 1923, 2058
BfoI	RGCGCY	1 cut(s)	41
BfuI	GTATCC	1 cut(s)	1910
BglII	AGATCT	1 cut(s)	614
Bme1390I	CCNGG	5 cut(s)	606, 792, 1497, 1592, 1836
Bme18I	GGWCC	6 cut(s)	443, 677, 1194, 1429, 1978, 2394
BmeRI	GACNNNNNGTC	1 cut(s)	792
BmeT110I	CYCGRG	1 cut(s)	1371
BmgT120I	GGNCC	9 cut(s)	443, 677, 828, 1194, 1429, 1795, 1978, 2257, 2394
BmrFI	CCNGG	5 cut(s)	606, 792, 1497, 1592, 1836
BmrI	ACTGGG	2 cut(s)	750, 1645
BmtI	GCTAGC	1 cut(s)	2139
BmuI	ACTGGG	2 cut(s)	750, 1645
BpiI	GAAGAC	4 cut(s)	429, 788, 1577, 2333
BplI	GAGNNNNNCTC	2 cut(s)	2329, 2361
BpmI	CTGGAG	1 cut(s)	588
Bpu10I	CCTNAGC	1 cut(s)	504
Bpu14I	TTCGAA	1 cut(s)	1234
BpuEI	CTTGAG	1 cut(s)	1736
BpuMI	CCSGG	2 cut(s)	792, 1497
Bsa29I	ATCGAT	1 cut(s)	1608
BsaBI	GATNNNNATC	1 cut(s)	1608
BsaHI	GRCGYC	2 cut(s)	38, 1666
BsaJI	CCNNGG	5 cut(s)	1370, 1791, 1916, 1981, 2022
Bsc4I	CCNNNNNNNGG	6 cut(s)	605, 608, 686, 1597, 1656, 2408
Bse1I	ACTGG	7 cut(s)	313, 386, 745, 965, 1291, 1651, 2318
Bse21I	CCTNAGG	3 cut(s)	54, 681, 1772
Bse3DI	GCAATG	3 cut(s)	1002, 1068, 1267
Bse8I	GATNNNNATC	1 cut(s)	1608
BseBI	CCWGG	3 cut(s)	606, 1592, 1836
BseCI	ATCGAT	1 cut(s)	1608
BseDI	CCNNGG	5 cut(s)	1370, 1791, 1916, 1981, 2022
BseGI	GGATG	9 cut(s)	292, 856, 946, 961, 1031, 1579, 1600, 1606, 1762
BseJI	GATNNNNATC	1 cut(s)	1608
BseLI	CCNNNNNNNGG	6 cut(s)	605, 608, 686, 1597, 1656, 2408
BseMI	GCAATG	3 cut(s)	1002, 1068, 1267
BseMII	CTCAG	8 cut(s)	68, 495, 632, 695, 1121, 1512, 1763, 2298
BseNI	ACTGG	7 cut(s)	313, 386, 745, 965, 1291, 1651, 2318
BseRI	GAGGAG	4 cut(s)	188, 212, 215, 1359
BseSI	GKGCMC	4 cut(s)	1378, 1990, 2164, 2443
BseYI	CCCAGC	1 cut(s)	1316
BsgI	GTGCAG	2 cut(s)	383, 941
Bsh1285I	CGRYCG	1 cut(s)	1612
BshFI	GGCC	9 cut(s)	648, 830, 1183, 1453, 1797, 1868, 2174, 2196, 2258
BshNI	GGYRCC	3 cut(s)	37, 571, 2438
BshVI	ATCGAT	1 cut(s)	1608
BsiEI	CGRYCG	1 cut(s)	1612
BsiHKAI	GWGCWC	3 cut(s)	308, 1848, 1990
BsiHKCI	CYCGRG	1 cut(s)	1371
BsiSI	CCGG	2 cut(s)	791, 1496
BslFI	GGGAC	3 cut(s)	798, 1415, 2028
BslI	CCNNNNNNNGG	6 cut(s)	605, 608, 686, 1597, 1656, 2408
BsmAI	GTCTC	5 cut(s)	170, 238, 1008, 1786, 2359
BsmFI	GGGAC	3 cut(s)	798, 1415, 2028
BsmI	GAATGC	3 cut(s)	414, 1242, 2092
BsnI	GGCC	9 cut(s)	648, 830, 1183, 1453, 1797, 1868, 2174, 2196, 2258
BsoBI	CYCGRG	1 cut(s)	1371
Bsp119I	TTCGAA	1 cut(s)	1234
Bsp1286I	GDGCHC	8 cut(s)	308, 510, 1378, 1689, 1848, 1990, 2164, 2443
Bsp1407I	TGTACA	1 cut(s)	483
BspACI	CCGC	4 cut(s)	944, 1876, 2036, 2392
BspANI	GGCC	9 cut(s)	648, 830, 1183, 1453, 1797, 1868, 2174, 2196, 2258
BspCNI	CTCAG	8 cut(s)	67, 496, 631, 694, 1120, 1513, 1764, 2297
BspDI	ATCGAT	1 cut(s)	1608
BspMAI	CTGCAG	3 cut(s)	184, 1927, 2062
BspOI	GCTAGC	1 cut(s)	2139
BspPI	GGATC	9 cut(s)	66, 324, 337, 763, 1368, 1706, 1907, 2117, 2419
BspT104I	TTCGAA	1 cut(s)	1234
BspT107I	GGYRCC	3 cut(s)	37, 571, 2438
BsrDI	GCAATG	3 cut(s)	1002, 1068, 1267
BsrGI	TGTACA	1 cut(s)	483
BsrI	ACTGG	7 cut(s)	313, 386, 745, 965, 1291, 1651, 2318
BssECI	CCNNGG	5 cut(s)	1370, 1791, 1916, 1981, 2022
BssNAI	GTATAC	1 cut(s)	1229
BssNI	GRCGYC	2 cut(s)	38, 1666
BssSI	CACGAG	1 cut(s)	1377
BssT1I	CCWWGG	3 cut(s)	1791, 1916, 1981
Bst1107I	GTATAC	1 cut(s)	1229
Bst2BI	CACGAG	1 cut(s)	1377
Bst2UI	CCWGG	3 cut(s)	606, 1592, 1836
Bst4CI	ACNGT	4 cut(s)	447, 891, 921, 2370
Bst6I	CTCTTC	5 cut(s)	165, 189, 216, 1444, 1467
BstACI	GRCGYC	2 cut(s)	38, 1666
BstAPI	GCANNNNNTGC	2 cut(s)	1994, 2245
BstAUI	TGTACA	1 cut(s)	483
BstBI	TTCGAA	1 cut(s)	1234
BstEII	GGTNACC	1 cut(s)	744
BstENI	CCTNNNNNAGG	1 cut(s)	2406
BstF5I	GGATG	9 cut(s)	292, 856, 946, 961, 1031, 1579, 1600, 1606, 1762
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	40
BstMAI	GTCTC	5 cut(s)	170, 238, 1008, 1786, 2359
BstMCI	CGRYCG	1 cut(s)	1612
BstNI	CCWGG	3 cut(s)	606, 1592, 1836
BstNSI	RCATGY	1 cut(s)	1400
BstPI	GGTNACC	1 cut(s)	744
BstSCI	CCNGG	5 cut(s)	604, 790, 1495, 1590, 1834
BstSFI	CTRYAG	4 cut(s)	180, 465, 1923, 2058
BstSLI	GKGCMC	4 cut(s)	1378, 1990, 2164, 2443
BstV2I	GAAGAC	4 cut(s)	429, 788, 1577, 2333
BstX2I	RGATCY	5 cut(s)	58, 329, 614, 1360, 2411
BstXI	CCANNNNNNTGG	4 cut(s)	1643, 1739, 2269, 2404
BstYI	RGATCY	5 cut(s)	58, 329, 614, 1360, 2411
BstZ17I	GTATAC	1 cut(s)	1229
Bsu15I	ATCGAT	1 cut(s)	1608
Bsu36I	CCTNAGG	3 cut(s)	54, 681, 1772
BsuI	GTATCC	1 cut(s)	1910
BsuRI	GGCC	9 cut(s)	648, 830, 1183, 1453, 1797, 1868, 2174, 2196, 2258
BsuTUI	ATCGAT	1 cut(s)	1608
BtsCI	GGATG	9 cut(s)	292, 856, 946, 961, 1031, 1579, 1600, 1606, 1762
BtsI	GCAGTG	2 cut(s)	2016, 2243
BtsIMutI	CAGTG	4 cut(s)	306, 1503, 2016, 2243
CaiI	CAGNNNCTG	2 cut(s)	2245, 2459
CfoI	GCGC	1 cut(s)	40
Cfr13I	GGNCC	9 cut(s)	443, 677, 828, 1194, 1429, 1795, 1978, 2257, 2394
ClaI	ATCGAT	1 cut(s)	1608
CseI	GACGC	1 cut(s)	1655
Csp6I	GTAC	2 cut(s)	484, 1816
CspCI	CAANNNNNGTGG	6 cut(s)	820, 855, 1153, 1188, 1277, 1312
CviAII	CATG	7 cut(s)	652, 752, 1142, 1397, 1849, 1962, 2398
CviQI	GTAC	2 cut(s)	484, 1816
DinI	GGCGCC	1 cut(s)	39
DraI	TTTAAA	1 cut(s)	870
DraIII	CACNNNGTG	1 cut(s)	1994
DriI	GACNNNNNGTC	1 cut(s)	792
EaeI	YGGCCR	2 cut(s)	1181, 1866
Eam1104I	CTCTTC	5 cut(s)	165, 189, 216, 1444, 1467
Eam1105I	GACNNNNNGTC	1 cut(s)	792
EarI	CTCTTC	5 cut(s)	165, 189, 216, 1444, 1467
EciI	GGCGGA	1 cut(s)	1865
Ecl136II	GAGCTC	1 cut(s)	1846
Eco130I	CCWWGG	3 cut(s)	1791, 1916, 1981
Eco147I	AGGCCT	2 cut(s)	1453, 2174
Eco24I	GRGCYC	3 cut(s)	510, 1689, 1848
Eco32I	GATATC	1 cut(s)	1606
Eco47I	GGWCC	6 cut(s)	443, 677, 1194, 1429, 1978, 2394
Eco53kI	GAGCTC	1 cut(s)	1846
Eco57I	CTGAAG	2 cut(s)	69, 423
Eco81I	CCTNAGG	3 cut(s)	54, 681, 1772
Eco88I	CYCGRG	1 cut(s)	1371
Eco91I	GGTNACC	1 cut(s)	744
EcoICRI	GAGCTC	1 cut(s)	1846
EcoNI	CCTNNNNNAGG	1 cut(s)	2406
EcoO109I	RGGNCCY	2 cut(s)	1429, 2257
EcoO65I	GGTNACC	1 cut(s)	744
EcoRII	CCWGG	3 cut(s)	604, 1590, 1834
EcoRV	GATATC	1 cut(s)	1606
EcoT14I	CCWWGG	3 cut(s)	1791, 1916, 1981
EcoT22I	ATGCAT	3 cut(s)	106, 118, 930
EcoT38I	GRGCYC	3 cut(s)	510, 1689, 1848
EgeI	GGCGCC	1 cut(s)	39
EheI	GGCGCC	1 cut(s)	39
ErhI	CCWWGG	3 cut(s)	1791, 1916, 1981
FaeI	CATG	7 cut(s)	655, 755, 1145, 1400, 1852, 1965, 2401
FalI	AAGNNNNNCTT	2 cut(s)	421, 453
FaqI	GGGAC	3 cut(s)	798, 1415, 2028
FatI	CATG	7 cut(s)	651, 751, 1141, 1396, 1848, 1961, 2397
FauI	CCCGC	1 cut(s)	2043
FauNDI	CATATG	2 cut(s)	987, 1270
FbaI	TGATCA	2 cut(s)	2182, 2356
FblI	GTMKAC	2 cut(s)	1117, 1228
FokI	GGATG	9 cut(s)	299, 843, 933, 948, 1018, 1586, 1607, 1613, 1769
FriOI	GRGCYC	3 cut(s)	510, 1689, 1848
GlaI	GCGC	1 cut(s)	39
GsaI	CCCAGC	1 cut(s)	1320
GsuI	CTGGAG	1 cut(s)	588
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	9 cut(s)	648, 830, 1183, 1453, 1797, 1868, 2174, 2196, 2258
HapII	CCGG	2 cut(s)	791, 1496
HgaI	GACGC	1 cut(s)	1655
HhaI	GCGC	1 cut(s)	40
Hin1I	GRCGYC	2 cut(s)	38, 1666
Hin1II	CATG	7 cut(s)	655, 755, 1145, 1400, 1852, 1965, 2401
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HindIII	AAGCTT	1 cut(s)	1802
HinfI	GANTC	4 cut(s)	131, 787, 2338, 2456
HpaII	CCGG	2 cut(s)	791, 1496
HphI	GGTGA	5 cut(s)	332, 621, 690, 1853, 2351
Hpy166II	GTNNAC	6 cut(s)	629, 677, 1118, 1229, 1988, 2218
Hpy8I	GTNNAC	6 cut(s)	629, 677, 1118, 1229, 1988, 2218
HpyAV	CCTTC	5 cut(s)	1034, 1507, 1676, 1917, 2207
HpyCH4III	ACNGT	4 cut(s)	447, 891, 921, 2370
Hsp92I	GRCGYC	2 cut(s)	38, 1666
Hsp92II	CATG	7 cut(s)	655, 755, 1145, 1400, 1852, 1965, 2401
HspAI	GCGC	1 cut(s)	38
KasI	GGCGCC	1 cut(s)	37
KflI	GGGWCCC	1 cut(s)	1429
Ksp22I	TGATCA	2 cut(s)	2182, 2356
LmnI	GCTCC	5 cut(s)	303, 1474, 1540, 1638, 2026
MaeIII	GTNAC	3 cut(s)	744, 1561, 2241
MfeI	CAATTG	2 cut(s)	1566, 1703
MflI	RGATCY	5 cut(s)	58, 329, 614, 1360, 2411
MhlI	GDGCHC	8 cut(s)	308, 510, 1378, 1689, 1848, 1990, 2164, 2443
MlsI	TGGCCA	2 cut(s)	1183, 1868
MluNI	TGGCCA	2 cut(s)	1183, 1868
Mly113I	GGCGCC	1 cut(s)	38
MlyI	GAGTC	3 cut(s)	781, 2347, 2465
MmeI	TCCRAC	1 cut(s)	1370
Mox20I	TGGCCA	2 cut(s)	1183, 1868
Mph1103I	ATGCAT	3 cut(s)	106, 118, 930
MroXI	GAANNNNTTC	4 cut(s)	414, 493, 564, 694
MscI	TGGCCA	2 cut(s)	1183, 1868
MseI	TTAA	8 cut(s)	78, 263, 804, 869, 1014, 1355, 1883, 2117
MslI	CAYNNNNRTG	7 cut(s)	765, 903, 1260, 1737, 2267, 2352, 2402
Msp20I	TGGCCA	2 cut(s)	1183, 1868
MspA1I	CMGCKG	3 cut(s)	517, 1211, 2392
MspI	CCGG	2 cut(s)	791, 1496
MspR9I	CCNGG	5 cut(s)	606, 792, 1497, 1592, 1836
MunI	CAATTG	2 cut(s)	1566, 1703
Mva1269I	GAATGC	3 cut(s)	414, 1242, 2092
MvaI	CCWGG	3 cut(s)	606, 1592, 1836
NarI	GGCGCC	1 cut(s)	38
NciI	CCSGG	2 cut(s)	792, 1497
NdeI	CATATG	2 cut(s)	987, 1270
NheI	GCTAGC	1 cut(s)	2135
NlaIII	CATG	7 cut(s)	655, 755, 1145, 1400, 1852, 1965, 2401
NmuCI	GTSAC	1 cut(s)	2241
NsiI	ATGCAT	3 cut(s)	106, 118, 930
NspI	RCATGY	1 cut(s)	1400
NspV	TTCGAA	1 cut(s)	1234
PceI	AGGCCT	2 cut(s)	1453, 2174
PctI	GAATGC	3 cut(s)	414, 1242, 2092
PdmI	GAANNNNTTC	4 cut(s)	414, 493, 564, 694
PfeI	GAWTC	1 cut(s)	131
PflFI	GACNNNGTC	1 cut(s)	1581
PfoI	TCCNGGA	1 cut(s)	1590
Ple19I	CGATCG	1 cut(s)	1612
PleI	GAGTC	3 cut(s)	781, 2346, 2464
PluTI	GGCGCC	1 cut(s)	41
PpsI	GAGTC	3 cut(s)	781, 2346, 2464
PpuMI	RGGWCCY	1 cut(s)	1429
Psp124BI	GAGCTC	1 cut(s)	1848
Psp5II	RGGWCCY	1 cut(s)	1429
Psp6I	CCWGG	3 cut(s)	604, 1590, 1834
PspEI	GGTNACC	1 cut(s)	744
PspFI	CCCAGC	1 cut(s)	1316
PspGI	CCWGG	3 cut(s)	604, 1590, 1834
PspPI	GGNCC	9 cut(s)	443, 677, 828, 1194, 1429, 1795, 1978, 2257, 2394
PspPPI	RGGWCCY	1 cut(s)	1429
PstI	CTGCAG	3 cut(s)	184, 1927, 2062
PstNI	CAGNNNCTG	2 cut(s)	2245, 2459
PsuI	RGATCY	5 cut(s)	58, 329, 614, 1360, 2411
PsyI	GACNNNGTC	1 cut(s)	1581
PvuI	CGATCG	1 cut(s)	1612
PvuII	CAGCTG	2 cut(s)	517, 1211
RsaI	GTAC	2 cut(s)	485, 1817
RsaNI	GTAC	2 cut(s)	484, 1816
RseI	CAYNNNNRTG	7 cut(s)	765, 903, 1260, 1737, 2267, 2352, 2402
SacI	GAGCTC	1 cut(s)	1848
SaqAI	TTAA	8 cut(s)	78, 263, 804, 869, 1014, 1355, 1883, 2117
Sau96I	GGNCC	9 cut(s)	443, 677, 828, 1194, 1429, 1795, 1978, 2257, 2394
SchI	GAGTC	3 cut(s)	781, 2347, 2465
ScrFI	CCNGG	5 cut(s)	606, 792, 1497, 1592, 1836
SduI	GDGCHC	8 cut(s)	308, 510, 1378, 1689, 1848, 1990, 2164, 2443
SfcI	CTRYAG	4 cut(s)	180, 465, 1923, 2058
SfoI	GGCGCC	1 cut(s)	39
SfuI	TTCGAA	1 cut(s)	1234
SinI	GGWCC	6 cut(s)	443, 677, 1194, 1429, 1978, 2394
SmiI	ATTTAAAT	1 cut(s)	870
SmiMI	CAYNNNNRTG	7 cut(s)	765, 903, 1260, 1737, 2267, 2352, 2402
SmlI	CTYRAG	1 cut(s)	1751
SmoI	CTYRAG	1 cut(s)	1751
SseBI	AGGCCT	2 cut(s)	1453, 2174
SsiI	CCGC	4 cut(s)	944, 1876, 2036, 2392
SspDI	GGCGCC	1 cut(s)	37
SspI	AATATT	3 cut(s)	399, 548, 658
SstI	GAGCTC	1 cut(s)	1848
StuI	AGGCCT	2 cut(s)	1453, 2174
StyD4I	CCNGG	5 cut(s)	604, 790, 1495, 1590, 1834
StyI	CCWWGG	3 cut(s)	1791, 1916, 1981
SwaI	ATTTAAAT	1 cut(s)	870
TaaI	ACNGT	4 cut(s)	447, 891, 921, 2370
TaqI	TCGA	4 cut(s)	99, 1234, 1608, 1969
TatI	WGTACW	1 cut(s)	483
TauI	GCSGC	1 cut(s)	946
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	8 cut(s)	78, 263, 804, 869, 1014, 1355, 1883, 2117
Tru9I	TTAA	8 cut(s)	78, 263, 804, 869, 1014, 1355, 1883, 2117
TscAI	CASTG	4 cut(s)	313, 1510, 2016, 2250
TseFI	GTSAC	1 cut(s)	2241
Tsp45I	GTSAC	1 cut(s)	2241
TspRI	CASTG	4 cut(s)	313, 1510, 2016, 2250
Tth111I	GACNNNGTC	1 cut(s)	1581
VneI	GTGCAC	1 cut(s)	1986
VpaK11BI	GGWCC	6 cut(s)	443, 677, 1194, 1429, 1978, 2394
XagI	CCTNNNNNAGG	1 cut(s)	2406
XapI	RAATTY	3 cut(s)	772, 1483, 2449
XbaI	TCTAGA	1 cut(s)	1531
XceI	RCATGY	1 cut(s)	1400
XmiI	GTMKAC	2 cut(s)	1117, 1228
XmnI	GAANNNNTTC	4 cut(s)	414, 493, 564, 694
Zsp2I	ATGCAT	3 cut(s)	106, 118, 930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.