Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001141

Physical Location & Seq

Genomic Coordinates Reverse (-)

35518252 .. 35525480

Gene Structure 7229 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034026

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGAATGCTAAGGACAGCATTGTAAGTGCGAGCCCCAACAATGGCAATGCTATACGAAGAGGGACCAAGCTTAAATCCCCTAGTTGTGCCCAAATGAGACAAAGTTGCCGTGCCCTCATGAGGGCCGGAGTTATTGTAGCCGCCTGGCATTGCGATCTCAGTCTCTACGAACGAACACCACGGATCTCCATCTCCGACGTCTCTCTCAACCATCTCCGACTTCTCTATCTTCTCTGGGCTCTGATTTTTAGTCATGTTTTGGAGCCTAAAGTTTCTCTTGGAGAGTTGCAGCAACAACCTCACCCCGTCAGAAAGTTGTATCAGTTTTGCGAGAAGCACGGAAAGCTTCCCGATATCAAGTACGAGAGAGATGAGACCAAGAGTACTGCGAATGTGTATGTTGATGGCATGTTTGTTGCCTCGGCTTCTTCTAAACAGCAAAAAATTGCTGAGGTCAATGCTGCTGCGATGGCTCTGTGTAACTTGATGCAATCGATGCACACGAATGATGCGTCGGTTGAAGATGTTGCTGGAATTGATGGGTCATTTCCTGTTCAAAGAGCACAAAATGGGTTGCATAATCTTTGTGCCAAGAAGAAGTGGCATAAACCAATTTACACCATCGAGCATGAAGAAGGTCCTCCACACGTGAAGAAGTTTGTATCCAAGAGGGAAACTGTTACAGGTGCTTGTGAGTTTGAAACATTTGGTTTGTGTTTCTTATTCATGGATGCTTTGGACCTATTTTACATGTTGATCCTGATTGGAAGCGATGATAATCCCATATTTGGATATGTTTGTTATTGGTTCCGGTATACAATCAGACTCATTTTCTTTAGGCAAGGTCATGACCTTTGCTTGATGCAGAATGGATTGGAAAGGTGCCAGTACTATCTGCTCGATGAGAATCGGATAAACATCTTTCTAATAGGAAGCGAAGCCCTTCGAGATAACCTGTTGATGCTGCACAATGAAGTGGAGTGCTCCCTTTCTCATCTTCTGAATGCTCTATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM Ribonuclease_3 dsrm

Protein Analysis

339

Amino Acids

38.53

Weight (kDa)

7.58

Isoelectric Point (pI)

37.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dsrm	PF00035	102 - 162	5.3e-09	Double-stranded RNA binding motif
DND1_DSRM	PF14709	187 - 223	6.7e-07	double strand RNA binding domain from DEAD END PROTEIN 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20420
fragaria_vesca	FvH4_3g23250
malus_domestica	MD03G1196200.v1.1 MD11G1212500.v1.1
prunus_persica	Prupe.4G219200_v2.0.a1 Prupe.4G219200_v2.0.a1 Prupe.4G219400_v2.0.a1 Prupe.4G219400_v2.0.a1
pyrus_communis	pycom03g14830 pycom11g18750
rosa_chinensis	RchiOBHm_Chr5g0040511 RchiOBHm_Chr5g0040931 RchiOBHm_Chr5g0040941
rosa_laevigata	RLG00000033986 RLG00000034014 RLG00000034016 RLG00000034026
rosa_multiflora	Rmu_co8051550.1_g000001 Rmu_co8392905.1_g000001 Rmu_sc0002475.1_g000019 Rmu_sc0002848.1_g000007 Rmu_sc0006651.1_g000007 Rmu_sc0006651.1_g000008 Rmu_sc0008620.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039580 Rroxscaffold_1G00039750 Rroxscaffold_1G00039760 Rroxscaffold_1G00040130 Rroxscaffold_1G00040850
rosa_rugosa	Rorug02G0350900 Rorug02G0350900 Rorug02G0351000 Rorug05G0185500 Rorug05G0188700 Rorug05G0188900 Rorug05G0188900
rosa_samantha	Rh2AG398700 Rh2BG409100 Rh2CG385500 Rh2CG540800 Rh2DG418900 Rh5AG272400 Rh5AG274300 Rh5AG274400 Rh5AG344200 Rh5BG276400 Rh5BG279300 Rh5BG279400 Rh5CG308900 Rh5CG311400 Rh5CG311600 Rh5DG284900 Rh5DG287500
rosa_wichuraiana	Rw2G032480 Rw5G025510 Rw5G025770 Rw5G025780 Rw5G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	201
AccB1I	GGYRCC	1 cut(s)	882
AccI	GTMKAC	1 cut(s)	815
AciI	CCGC	1 cut(s)	141
AclWI	GGATC	2 cut(s)	191, 751
AcvI	CACGTG	1 cut(s)	649
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	3 cut(s)	362, 385, 890
AfiI	CCNNNNNNNGG	4 cut(s)	41, 120, 121, 788
AflIII	ACRYGT	2 cut(s)	646, 750
AgsI	TTSAA	3 cut(s)	521, 557, 701
AjnI	CCWGG	1 cut(s)	143
AluBI	AGCT	2 cut(s)	70, 346
AluI	AGCT	2 cut(s)	70, 346
Alw21I	GWGCWC	2 cut(s)	565, 986
Alw26I	GTCTC	4 cut(s)	91, 167, 205, 368
AlwI	GGATC	2 cut(s)	191, 751
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	4 cut(s)	289, 461, 464, 964
ArsI	GACNNNNNNTTYG	2 cut(s)	497, 529
Asp700I	GAANNNNTTC	1 cut(s)	942
AspS9I	GGNCC	4 cut(s)	63, 123, 638, 739
AsuHPI	GGTGA	1 cut(s)	293
AvaII	GGWCC	3 cut(s)	63, 638, 739
BaeGI	GKGCMC	2 cut(s)	91, 115
BanI	GGYRCC	1 cut(s)	882
BanII	GRGCYC	2 cut(s)	35, 241
BbrPI	CACGTG	1 cut(s)	649
Bbv12I	GWGCWC	2 cut(s)	565, 986
BbvCI	CCTCAGC	1 cut(s)	450
BbvI	GCAGC	4 cut(s)	301, 448, 451, 951
BccI	CCATC	6 cut(s)	197, 219, 398, 463, 533, 629
BceAI	ACGGC	1 cut(s)	93
BciT130I	CCWGG	1 cut(s)	145
BciVI	GTATCC	1 cut(s)	673
BcoDI	GTCTC	4 cut(s)	91, 167, 205, 368
BfaI	CTAG	1 cut(s)	81
BfuI	GTATCC	1 cut(s)	673
BisI	GCNGC	5 cut(s)	141, 290, 462, 465, 965
BlsI	GCNGC	5 cut(s)	142, 291, 463, 466, 966
BmcAI	AGTACT	2 cut(s)	385, 890
Bme1390I	CCNGG	1 cut(s)	145
Bme18I	GGWCC	3 cut(s)	63, 638, 739
BmgT120I	GGNCC	4 cut(s)	63, 123, 638, 739
BmiI	GGNNCC	4 cut(s)	64, 264, 809, 884
BmrFI	CCNGG	1 cut(s)	145
BmsI	GCATC	6 cut(s)	477, 486, 499, 721, 852, 951
Bpu10I	CCTNAGC	2 cut(s)	9, 450
Bsa29I	ATCGAT	1 cut(s)	494
BsaAI	YACGTR	1 cut(s)	649
BsaBI	GATNNNNATC	4 cut(s)	188, 777, 906, 917
BsaHI	GRCGYC	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	368
BsaJI	CCNNGG	2 cut(s)	179, 420
BsaWI	WCCGGW	1 cut(s)	810
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bsc4I	CCNNNNNNNGG	4 cut(s)	41, 120, 121, 788
Bse1I	ACTGG	1 cut(s)	886
Bse3DI	GCAATG	2 cut(s)	52, 148
Bse8I	GATNNNNATC	4 cut(s)	188, 777, 906, 917
BseBI	CCWGG	1 cut(s)	145
BseCI	ATCGAT	1 cut(s)	494
BseDI	CCNNGG	2 cut(s)	179, 420
BseGI	GGATG	1 cut(s)	736
BseJI	GATNNNNATC	4 cut(s)	188, 777, 906, 917
BseLI	CCNNNNNNNGG	4 cut(s)	41, 120, 121, 788
BseMI	GCAATG	2 cut(s)	52, 148
BseMII	CTCAG	2 cut(s)	172, 441
BseNI	ACTGG	1 cut(s)	886
BseSI	GKGCMC	2 cut(s)	91, 115
BseXI	GCAGC	4 cut(s)	301, 448, 451, 951
BsgI	GTGCAG	1 cut(s)	950
BshFI	GGCC	1 cut(s)	125
BshNI	GGYRCC	1 cut(s)	882
BshVI	ATCGAT	1 cut(s)	494
BsiHKAI	GWGCWC	2 cut(s)	565, 986
BsiSI	CCGG	2 cut(s)	126, 811
BslFI	GGGAC	1 cut(s)	76
BslI	CCNNNNNNNGG	4 cut(s)	41, 120, 121, 788
BsmAI	GTCTC	4 cut(s)	91, 167, 205, 368
BsmBI	CGTCTC	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	76
BsmI	GAATGC	2 cut(s)	10, 1009
BsnI	GGCC	1 cut(s)	125
Bso31I	GGTCTC	1 cut(s)	368
Bsp1286I	GDGCHC	6 cut(s)	35, 91, 115, 241, 565, 986
Bsp143I	GATC	3 cut(s)	154, 183, 756
BspACI	CCGC	1 cut(s)	141
BspANI	GGCC	1 cut(s)	125
BspCNI	CTCAG	2 cut(s)	171, 442
BspDI	ATCGAT	1 cut(s)	494
BspHI	TCATGA	2 cut(s)	117, 847
BspLI	GGNNCC	4 cut(s)	64, 264, 809, 884
BspPI	GGATC	2 cut(s)	191, 751
BspT107I	GGYRCC	1 cut(s)	882
BspTNI	GGTCTC	1 cut(s)	368
BsrDI	GCAATG	2 cut(s)	52, 148
BsrI	ACTGG	1 cut(s)	886
BssECI	CCNNGG	2 cut(s)	179, 420
BssMI	GATC	3 cut(s)	154, 183, 756
BssNAI	GTATAC	1 cut(s)	816
BssNI	GRCGYC	1 cut(s)	198
Bst1107I	GTATAC	1 cut(s)	816
Bst2UI	CCWGG	1 cut(s)	145
Bst4CI	ACNGT	1 cut(s)	679
Bst6I	CTCTTC	1 cut(s)	52
BstACI	GRCGYC	1 cut(s)	198
BstAPI	GCANNNNNTGC	1 cut(s)	496
BstBAI	YACGTR	1 cut(s)	649
BstC8I	GCNNGC	1 cut(s)	31
BstDEI	CTNAG	3 cut(s)	9, 158, 450
BstDSI	CCRYGG	1 cut(s)	179
BstF5I	GGATG	1 cut(s)	736
BstKTI	GATC	3 cut(s)	157, 186, 759
BstMAI	GTCTC	4 cut(s)	91, 167, 205, 368
BstMBI	GATC	3 cut(s)	154, 183, 756
BstMWI	GCNNNNNNNGC	3 cut(s)	343, 470, 496
BstNI	CCWGG	1 cut(s)	145
BstNSI	RCATGY	2 cut(s)	412, 754
BstSCI	CCNGG	1 cut(s)	143
BstSLI	GKGCMC	2 cut(s)	91, 115
BstV1I	GCAGC	4 cut(s)	301, 448, 451, 951
BstX2I	RGATCY	1 cut(s)	183
BstYI	RGATCY	1 cut(s)	183
BstZ17I	GTATAC	1 cut(s)	816
Bsu15I	ATCGAT	1 cut(s)	494
BsuI	GTATCC	1 cut(s)	673
BsuRI	GGCC	1 cut(s)	125
BsuTUI	ATCGAT	1 cut(s)	494
BtgI	CCRYGG	1 cut(s)	179
BtgZI	GCGATG	2 cut(s)	482, 786
BtsCI	GGATG	1 cut(s)	736
Cac8I	GCNNGC	1 cut(s)	31
CciI	TCATGA	2 cut(s)	117, 847
Cfr13I	GGNCC	4 cut(s)	63, 123, 638, 739
ClaI	ATCGAT	1 cut(s)	494
CseI	GACGC	1 cut(s)	501
Csp6I	GTAC	3 cut(s)	361, 384, 889
CviAII	CATG	7 cut(s)	118, 254, 409, 629, 727, 751, 848
CviQI	GTAC	3 cut(s)	361, 384, 889
DdeI	CTNAG	3 cut(s)	9, 158, 450
DpnI	GATC	3 cut(s)	156, 185, 758
DpnII	GATC	3 cut(s)	154, 183, 756
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
Eco24I	GRGCYC	2 cut(s)	35, 241
Eco31I	GGTCTC	1 cut(s)	368
Eco32I	GATATC	1 cut(s)	355
Eco47I	GGWCC	3 cut(s)	63, 638, 739
Eco72I	CACGTG	1 cut(s)	649
EcoO109I	RGGNCCY	1 cut(s)	638
EcoRII	CCWGG	1 cut(s)	143
EcoRV	GATATC	1 cut(s)	355
EcoT38I	GRGCYC	2 cut(s)	35, 241
Esp3I	CGTCTC	1 cut(s)	205
FaeI	CATG	7 cut(s)	121, 257, 412, 632, 730, 754, 851
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	7 cut(s)	117, 253, 408, 628, 726, 750, 847
FblI	GTMKAC	1 cut(s)	815
Fnu4HI	GCNGC	5 cut(s)	141, 290, 462, 465, 965
FokI	GGATG	1 cut(s)	743
FriOI	GRGCYC	2 cut(s)	35, 241
Fsp4HI	GCNGC	5 cut(s)	141, 290, 462, 465, 965
FspBI	CTAG	1 cut(s)	81
GluI	GCNGC	5 cut(s)	141, 290, 462, 465, 965
HaeIII	GGCC	1 cut(s)	125
HapII	CCGG	2 cut(s)	126, 811
HgaI	GACGC	1 cut(s)	501
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	7 cut(s)	121, 257, 412, 632, 730, 754, 851
HindIII	AAGCTT	2 cut(s)	68, 344
HinfI	GANTC	2 cut(s)	825, 907
HpaII	CCGG	2 cut(s)	126, 811
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	1 cut(s)	816
Hpy188I	TCNGA	7 cut(s)	196, 218, 243, 311, 824, 912, 1002
Hpy188III	TCNNGA	5 cut(s)	118, 350, 760, 848, 947
Hpy8I	GTNNAC	1 cut(s)	816
Hpy99I	CGWCG	2 cut(s)	200, 517
HpyAV	CCTTC	2 cut(s)	629, 953
HpyCH4III	ACNGT	1 cut(s)	679
HpyCH4IV	ACGT	2 cut(s)	198, 648
HpyCH4V	TGCA	6 cut(s)	289, 490, 499, 577, 865, 967
HpyF10VI	GCNNNNNNNGC	3 cut(s)	343, 470, 496
HpyF3I	CTNAG	3 cut(s)	9, 158, 450
HpySE526I	ACGT	2 cut(s)	198, 648
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	7 cut(s)	121, 257, 412, 632, 730, 754, 851
Kzo9I	GATC	3 cut(s)	154, 183, 756
LmnI	GCTCC	2 cut(s)	262, 989
Lsp1109I	GCAGC	4 cut(s)	301, 448, 451, 951
LweI	GCATC	6 cut(s)	477, 486, 499, 721, 852, 951
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	2 cut(s)	198, 648
MaeIII	GTNAC	2 cut(s)	479, 679
MalI	GATC	3 cut(s)	156, 185, 758
MboI	GATC	3 cut(s)	154, 183, 756
MboII	GAAGA	8 cut(s)	69, 221, 420, 533, 607, 644, 664, 989
MflI	RGATCY	1 cut(s)	183
MhlI	GDGCHC	6 cut(s)	35, 91, 115, 241, 565, 986
MluCI	AATT	3 cut(s)	444, 534, 612
MlyI	GAGTC	1 cut(s)	819
MmeI	TCCRAC	2 cut(s)	219, 241
MnlI	CCTC	8 cut(s)	53, 114, 125, 309, 430, 445, 651, 663
MroXI	GAANNNNTTC	1 cut(s)	942
MseI	TTAA	1 cut(s)	72
MslI	CAYNNNNRTG	1 cut(s)	504
MspI	CCGG	2 cut(s)	126, 811
MspR9I	CCNGG	1 cut(s)	145
Mva1269I	GAATGC	2 cut(s)	10, 1009
MvaI	CCWGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	3 cut(s)	343, 470, 496
NdeII	GATC	3 cut(s)	154, 183, 756
NlaIII	CATG	7 cut(s)	121, 257, 412, 632, 730, 754, 851
NlaIV	GGNNCC	4 cut(s)	64, 264, 809, 884
NmeAIII	GCCGAG	1 cut(s)	401
NspI	RCATGY	2 cut(s)	412, 754
PagI	TCATGA	2 cut(s)	117, 847
PciI	ACATGT	1 cut(s)	750
PcsI	WCGNNNNNNNCGW	2 cut(s)	500, 509
PctI	GAATGC	2 cut(s)	10, 1009
PdmI	GAANNNNTTC	1 cut(s)	942
PfeI	GAWTC	1 cut(s)	907
PkrI	GCNGC	5 cut(s)	142, 291, 463, 466, 966
PleI	GAGTC	1 cut(s)	819
PmaCI	CACGTG	1 cut(s)	649
PmlI	CACGTG	1 cut(s)	649
PpsI	GAGTC	1 cut(s)	819
Ppu21I	YACGTR	1 cut(s)	649
PpuMI	RGGWCCY	1 cut(s)	638
PscI	ACATGT	1 cut(s)	750
Psp5II	RGGWCCY	1 cut(s)	638
Psp6I	CCWGG	1 cut(s)	143
PspCI	CACGTG	1 cut(s)	649
PspGI	CCWGG	1 cut(s)	143
PspN4I	GGNNCC	4 cut(s)	64, 264, 809, 884
PspPI	GGNCC	4 cut(s)	63, 123, 638, 739
PspPPI	RGGWCCY	1 cut(s)	638
PsuI	RGATCY	1 cut(s)	183
RsaI	GTAC	3 cut(s)	362, 385, 890
RsaNI	GTAC	3 cut(s)	361, 384, 889
RseI	CAYNNNNRTG	1 cut(s)	504
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	5 cut(s)	141, 290, 462, 465, 965
Sau3AI	GATC	3 cut(s)	154, 183, 756
Sau96I	GGNCC	4 cut(s)	63, 123, 638, 739
ScaI	AGTACT	2 cut(s)	385, 890
SchI	GAGTC	1 cut(s)	819
ScrFI	CCNGG	1 cut(s)	145
SduI	GDGCHC	6 cut(s)	35, 91, 115, 241, 565, 986
SfaNI	GCATC	6 cut(s)	477, 486, 499, 721, 852, 951
SinI	GGWCC	3 cut(s)	63, 638, 739
SmiMI	CAYNNNNRTG	1 cut(s)	504
Sse9I	AATT	3 cut(s)	444, 534, 612
SsiI	CCGC	1 cut(s)	141
SspMI	CTAG	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	143
TaaI	ACNGT	1 cut(s)	679
TaiI	ACGT	2 cut(s)	201, 651
TaqI	TCGA	4 cut(s)	494, 624, 900, 946
TasI	AATT	3 cut(s)	444, 534, 612
TatI	WGTACW	2 cut(s)	383, 888
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	1 cut(s)	907
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TseI	GCWGC	4 cut(s)	289, 461, 464, 964
TspDTI	ATGAA	4 cut(s)	17, 645, 715, 987
TspGWI	ACGGA	2 cut(s)	196, 354
VpaK11BI	GGWCC	3 cut(s)	63, 638, 739
XceI	RCATGY	2 cut(s)	412, 754
XmiI	GTMKAC	1 cut(s)	815
XmnI	GAANNNNTTC	1 cut(s)	942
XspI	CTAG	1 cut(s)	81
ZraI	GACGTC	1 cut(s)	199
ZrmI	AGTACT	2 cut(s)	385, 890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.