Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001141

Physical Location & Seq

Genomic Coordinates Forward (+)

36911588 .. 36912677

Gene Structure 1090 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G025790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGTGCACGAATGATGCGTCGGTTGAAGATGGTGCTGGAATTTATGGGTCATTTCCTGTTGAAAGAGCAACAAATGAGTTGCATAATCTTTGTGCCAAGAAGAAGTGGCCTAACCCAATTTACACCATCGAGCATGAAGAAGGTCCTCCACACGTGAAGAAGTTTGTATCCAAGGTAACTATAGATGGTGTGCTATCTGTAACAGGAGATGAAAAGTCGAGACTGAAACATGCGAATAATTCTGCTGCTTCTTTGATGATCCGCCGTCTGCAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM Ribonuclease_3 dsrm

Protein Analysis

92

Amino Acids

10.16

Weight (kDa)

6.9

Isoelectric Point (pI)

33.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DND1_DSRM	PF14709	23 - 90	2.9e-13	double strand RNA binding domain from DEAD END PROTEIN 1
dsrm	PF00035	25 - 90	4.4e-12	Double-stranded RNA binding motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20420
fragaria_vesca	FvH4_3g23250
malus_domestica	MD03G1196200.v1.1 MD11G1212500.v1.1
prunus_persica	Prupe.4G219200_v2.0.a1 Prupe.4G219200_v2.0.a1 Prupe.4G219400_v2.0.a1 Prupe.4G219400_v2.0.a1
pyrus_communis	pycom03g14830 pycom11g18750
rosa_chinensis	RchiOBHm_Chr5g0040511 RchiOBHm_Chr5g0040931 RchiOBHm_Chr5g0040941
rosa_laevigata	RLG00000033986 RLG00000034014 RLG00000034016 RLG00000034026
rosa_multiflora	Rmu_co8051550.1_g000001 Rmu_co8392905.1_g000001 Rmu_sc0002475.1_g000019 Rmu_sc0002848.1_g000007 Rmu_sc0006651.1_g000007 Rmu_sc0006651.1_g000008 Rmu_sc0008620.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039580 Rroxscaffold_1G00039750 Rroxscaffold_1G00039760 Rroxscaffold_1G00040130 Rroxscaffold_1G00040850
rosa_rugosa	Rorug02G0350900 Rorug02G0350900 Rorug02G0351000 Rorug05G0185500 Rorug05G0188700 Rorug05G0188900 Rorug05G0188900
rosa_samantha	Rh2AG398700 Rh2BG409100 Rh2CG385500 Rh2CG540800 Rh2DG418900 Rh5AG272400 Rh5AG274300 Rh5AG274400 Rh5AG344200 Rh5BG276400 Rh5BG279300 Rh5BG279400 Rh5CG308900 Rh5CG311400 Rh5CG311600 Rh5DG284900 Rh5DG287500
rosa_wichuraiana	Rw2G032480 Rw5G025510 Rw5G025770 Rw5G025780 Rw5G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	262
AclWI	GGATC	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	39
AcvI	CACGTG	1 cut(s)	154
AflIII	ACRYGT	1 cut(s)	151
AgsI	TTSAA	2 cut(s)	26, 62
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	214
Alw44I	GTGCAC	1 cut(s)	4
AlwI	GGATC	1 cut(s)	253
AoxI	GGCC	1 cut(s)	107
ApaLI	GTGCAC	1 cut(s)	4
ApeKI	GCWGC	1 cut(s)	245
ApoI	RAATTY	1 cut(s)	39
ArsI	GACNNNNNNTTYG	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	143
BaeGI	GKGCMC	1 cut(s)	8
BbrPI	CACGTG	1 cut(s)	154
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	232
BccI	CCATC	3 cut(s)	23, 134, 179
BceAI	ACGGC	1 cut(s)	249
BciVI	GTATCC	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	214
BfmI	CTRYAG	1 cut(s)	180
BfuI	GTATCC	1 cut(s)	178
BisI	GCNGC	1 cut(s)	246
BlsI	GCNGC	1 cut(s)	247
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	143
BmsI	GCATC	1 cut(s)	4
BsaAI	YACGTR	1 cut(s)	154
BsaJI	CCNNGG	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	171
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	232
BshFI	GGCC	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	8
BsmAI	GTCTC	1 cut(s)	214
BsnI	GGCC	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	258
BspACI	CCGC	1 cut(s)	262
BspANI	GGCC	1 cut(s)	109
BspPI	GGATC	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	1 cut(s)	258
BssT1I	CCWWGG	1 cut(s)	171
BstBAI	YACGTR	1 cut(s)	154
BstKTI	GATC	1 cut(s)	261
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	1 cut(s)	258
BstNSI	RCATGY	1 cut(s)	233
BstSFI	CTRYAG	1 cut(s)	180
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	232
BsuI	GTATCC	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	143
CseI	GACGC	1 cut(s)	6
CviAII	CATG	2 cut(s)	134, 230
CviJI	RGCY	1 cut(s)	109
CviKI_1	RGCY	1 cut(s)	109
DpnI	GATC	1 cut(s)	260
DpnII	GATC	1 cut(s)	258
EciI	GGCGGA	1 cut(s)	251
Eco130I	CCWWGG	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	143
Eco72I	CACGTG	1 cut(s)	154
EcoO109I	RGGNCCY	1 cut(s)	143
EcoT14I	CCWWGG	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	2 cut(s)	137, 233
FaiI	YATR	5 cut(s)	45, 84, 135, 182, 231
FatI	CATG	2 cut(s)	133, 229
Fnu4HI	GCNGC	1 cut(s)	246
Fsp4HI	GCNGC	1 cut(s)	246
GluI	GCNGC	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	109
HgaI	GACGC	1 cut(s)	6
Hin1II	CATG	2 cut(s)	137, 233
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188III	TCNNGA	1 cut(s)	219
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	134
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	3 cut(s)	6, 82, 271
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	2 cut(s)	137, 233
Kzo9I	GATC	1 cut(s)	258
LpnPI	CCDG	3 cut(s)	21, 69, 189
Lsp1109I	GCAGC	1 cut(s)	232
LweI	GCATC	1 cut(s)	4
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	2 cut(s)	175, 199
MalI	GATC	1 cut(s)	260
MboI	GATC	1 cut(s)	258
MboII	GAAGA	4 cut(s)	38, 112, 149, 169
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	3 cut(s)	39, 117, 238
MnlI	CCTC	1 cut(s)	156
NdeII	GATC	1 cut(s)	258
NlaIII	CATG	2 cut(s)	137, 233
NspI	RCATGY	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PkrI	GCNGC	1 cut(s)	247
PmaCI	CACGTG	1 cut(s)	154
PmlI	CACGTG	1 cut(s)	154
Ppu21I	YACGTR	1 cut(s)	154
PpuMI	RGGWCCY	1 cut(s)	143
Psp5II	RGGWCCY	1 cut(s)	143
PspCI	CACGTG	1 cut(s)	154
PspPI	GGNCC	1 cut(s)	143
PspPPI	RGGWCCY	1 cut(s)	143
SatI	GCNGC	1 cut(s)	246
Sau3AI	GATC	1 cut(s)	258
Sau96I	GGNCC	1 cut(s)	143
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	3 cut(s)	145, 156, 177
SfaNI	GCATC	1 cut(s)	4
SfcI	CTRYAG	1 cut(s)	180
SinI	GGWCC	1 cut(s)	143
Sse9I	AATT	3 cut(s)	39, 117, 238
SsiI	CCGC	1 cut(s)	262
StyI	CCWWGG	1 cut(s)	171
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	2 cut(s)	129, 218
TasI	AATT	3 cut(s)	39, 117, 238
TseI	GCWGC	1 cut(s)	245
TspDTI	ATGAA	2 cut(s)	150, 225
VneI	GTGCAC	1 cut(s)	4
VpaK11BI	GGWCC	1 cut(s)	143
XapI	RAATTY	1 cut(s)	39
XceI	RCATGY	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.