Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001141

Physical Location & Seq

Genomic Coordinates Forward (+)

53438923 .. 53440499

Gene Structure 1577 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G032480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGAAATTTAAGCATGTTTTGGAGCCTATAGTTACTCTTGAAGAGTTAGAGTTGCAGCAACAACCTCATCCTGTGACAGAGTTGCATCAACTTTGCCAGAAGCAGTGGAAGCATGTCAGTATCGAGTACGGGAGAGATAAGATGAAGAGTAATATTGATGGGAAGTGTGTTGCCTTGGGTTCGGCTGAACAGAAAGAAATTGCTAAGGTCAATGCTGCTGAGCTGGCTCTGAGTAAGTTGATGCAATCGATATGCATAAATGATGTGTCAGTTGAAGATATTGCTGGAATTGATGGGTTTTCTGCTGTTGAAAGAGCAAAAGATGAGTTGCATAAGCTTTGTGCCAAGAAGAAGTGGCCTAAACCAATTTACACCATTGAGCATGAAAAAAGTCCTCCGCATGATAAGATGTATCAATGGAGGGTAACTATAGGTGTGGTATATATGACGGGAGATGCAAAGTCAACAGTAAAAGATGCCAAGAATTCTGCAGCTTCTTCAATGATCCGCTCTTTACAAGACCCTAAAAATGTACGTATGAAACGCCCATGTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM Ribonuclease_3 dsrm

Protein Analysis

185

Amino Acids

20.91

Weight (kDa)

8.87

Isoelectric Point (pI)

43.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DND1_DSRM	PF14709	105 - 172	1.3e-11	double strand RNA binding domain from DEAD END PROTEIN 1
dsrm	PF00035	106 - 172	5.4e-13	Double-stranded RNA binding motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20420
fragaria_vesca	FvH4_3g23250
malus_domestica	MD03G1196200.v1.1 MD11G1212500.v1.1
prunus_persica	Prupe.4G219200_v2.0.a1 Prupe.4G219200_v2.0.a1 Prupe.4G219400_v2.0.a1 Prupe.4G219400_v2.0.a1
pyrus_communis	pycom03g14830 pycom11g18750
rosa_chinensis	RchiOBHm_Chr5g0040511 RchiOBHm_Chr5g0040931 RchiOBHm_Chr5g0040941
rosa_laevigata	RLG00000033986 RLG00000034014 RLG00000034016 RLG00000034026
rosa_multiflora	Rmu_co8051550.1_g000001 Rmu_co8392905.1_g000001 Rmu_sc0002475.1_g000019 Rmu_sc0002848.1_g000007 Rmu_sc0006651.1_g000007 Rmu_sc0006651.1_g000008 Rmu_sc0008620.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039580 Rroxscaffold_1G00039750 Rroxscaffold_1G00039760 Rroxscaffold_1G00040130 Rroxscaffold_1G00040850
rosa_rugosa	Rorug02G0350900 Rorug02G0350900 Rorug02G0351000 Rorug05G0185500 Rorug05G0188700 Rorug05G0188900 Rorug05G0188900
rosa_samantha	Rh2AG398700 Rh2BG409100 Rh2CG385500 Rh2CG540800 Rh2DG418900 Rh5AG272400 Rh5AG274300 Rh5AG274400 Rh5AG344200 Rh5BG276400 Rh5BG279300 Rh5BG279400 Rh5CG308900 Rh5CG311400 Rh5CG311600 Rh5DG284900 Rh5DG287500
rosa_wichuraiana	Rw2G032480 Rw5G025510 Rw5G025770 Rw5G025780 Rw5G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	510
AciI	CCGC	2 cut(s)	398, 508
AclWI	GGATC	1 cut(s)	499
AcsI	RAATTY	2 cut(s)	5, 484
AfaI	GTAC	2 cut(s)	128, 534
AgsI	TTSAA	4 cut(s)	41, 275, 311, 501
AluBI	AGCT	3 cut(s)	223, 337, 494
AluI	AGCT	3 cut(s)	223, 337, 494
AlwI	GGATC	1 cut(s)	499
AoxI	GGCC	1 cut(s)	356
ApeKI	GCWGC	3 cut(s)	55, 215, 491
ApoI	RAATTY	2 cut(s)	5, 484
BbvI	GCAGC	3 cut(s)	67, 202, 503
BccI	CCATC	2 cut(s)	152, 287
BfmI	CTRYAG	3 cut(s)	27, 429, 489
BisI	GCNGC	3 cut(s)	56, 216, 492
BlpI	GCTNAGC	1 cut(s)	219
BlsI	GCNGC	3 cut(s)	57, 217, 493
BmiI	GGNNCC	1 cut(s)	24
BmsI	GCATC	4 cut(s)	94, 231, 445, 466
Bpu10I	CCTNAGC	1 cut(s)	204
Bpu1102I	GCTNAGC	1 cut(s)	219
Bsa29I	ATCGAT	1 cut(s)	248
BsaAI	YACGTR	1 cut(s)	536
BsaJI	CCNNGG	1 cut(s)	174
BseCI	ATCGAT	1 cut(s)	248
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	67
BseMII	CTCAG	2 cut(s)	210, 221
BseXI	GCAGC	3 cut(s)	67, 202, 503
BshFI	GGCC	1 cut(s)	358
BshVI	ATCGAT	1 cut(s)	248
BsnI	GGCC	1 cut(s)	358
Bsp143I	GATC	1 cut(s)	504
Bsp1720I	GCTNAGC	1 cut(s)	219
BspACI	CCGC	2 cut(s)	398, 508
BspANI	GGCC	1 cut(s)	358
BspCNI	CTCAG	2 cut(s)	211, 222
BspDI	ATCGAT	1 cut(s)	248
BspLI	GGNNCC	1 cut(s)	24
BspMAI	CTGCAG	1 cut(s)	493
BspPI	GGATC	1 cut(s)	499
BsrBI	CCGCTC	1 cut(s)	510
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	1 cut(s)	504
BssT1I	CCWWGG	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	469
Bst6I	CTCTTC	2 cut(s)	36, 140
BstBAI	YACGTR	1 cut(s)	536
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	3 cut(s)	204, 219, 230
BstF5I	GGATG	1 cut(s)	67
BstKTI	GATC	1 cut(s)	507
BstMBI	GATC	1 cut(s)	504
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 224
BstNSI	RCATGY	2 cut(s)	17, 116
BstSFI	CTRYAG	3 cut(s)	27, 429, 489
BstSNI	TACGTA	1 cut(s)	536
BstV1I	GCAGC	3 cut(s)	67, 202, 503
Bsu15I	ATCGAT	1 cut(s)	248
BsuRI	GGCC	1 cut(s)	358
BsuTUI	ATCGAT	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	67
BtsI	GCAGTG	1 cut(s)	110
BtsIMutI	CAGTG	1 cut(s)	110
Cac8I	GCNNGC	1 cut(s)	225
ClaI	ATCGAT	1 cut(s)	248
Csp6I	GTAC	2 cut(s)	127, 533
CviAII	CATG	5 cut(s)	14, 113, 383, 401, 549
CviJI	RGCY	7 cut(s)	25, 185, 223, 227, 337, 358, 494
CviKI_1	RGCY	7 cut(s)	25, 185, 223, 227, 337, 358, 494
CviQI	GTAC	2 cut(s)	127, 533
DdeI	CTNAG	3 cut(s)	204, 219, 230
DpnI	GATC	1 cut(s)	506
DpnII	GATC	1 cut(s)	504
Eam1104I	CTCTTC	2 cut(s)	36, 140
EarI	CTCTTC	2 cut(s)	36, 140
Eco105I	TACGTA	1 cut(s)	536
Eco130I	CCWWGG	1 cut(s)	174
EcoRI	GAATTC	1 cut(s)	484
EcoT14I	CCWWGG	1 cut(s)	174
EcoT22I	ATGCAT	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	5 cut(s)	17, 116, 386, 404, 552
FatI	CATG	5 cut(s)	13, 112, 382, 400, 548
Fnu4HI	GCNGC	3 cut(s)	56, 216, 492
FokI	GGATG	1 cut(s)	54
Fsp4HI	GCNGC	3 cut(s)	56, 216, 492
GluI	GCNGC	3 cut(s)	56, 216, 492
HaeIII	GGCC	1 cut(s)	358
Hin1II	CATG	5 cut(s)	17, 116, 386, 404, 552
HincII	GTYRAC	1 cut(s)	465
HindII	GTYRAC	1 cut(s)	465
HindIII	AAGCTT	1 cut(s)	335
Hpy166II	GTNNAC	1 cut(s)	465
Hpy188I	TCNGA	1 cut(s)	231
Hpy188III	TCNNGA	1 cut(s)	38
Hpy8I	GTNNAC	1 cut(s)	465
HpyCH4III	ACNGT	1 cut(s)	469
HpyCH4IV	ACGT	1 cut(s)	535
HpyCH4V	TGCA	7 cut(s)	55, 85, 244, 255, 331, 458, 491
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 224
HpyF3I	CTNAG	3 cut(s)	204, 219, 230
HpySE526I	ACGT	1 cut(s)	535
Hsp92II	CATG	5 cut(s)	17, 116, 386, 404, 552
Kzo9I	GATC	1 cut(s)	504
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	4 cut(s)	84, 110, 209, 270
Lsp1109I	GCAGC	3 cut(s)	67, 202, 503
LweI	GCATC	4 cut(s)	94, 231, 445, 466
MaeII	ACGT	1 cut(s)	535
MaeIII	GTNAC	3 cut(s)	31, 73, 424
MalI	GATC	1 cut(s)	506
MbiI	CCGCTC	1 cut(s)	510
MboI	GATC	1 cut(s)	504
MboII	GAAGA	5 cut(s)	53, 157, 287, 361, 489
MluCI	AATT	5 cut(s)	5, 198, 288, 366, 484
MnlI	CCTC	3 cut(s)	75, 405, 414
Mph1103I	ATGCAT	1 cut(s)	257
MseI	TTAA	1 cut(s)	9
MwoI	GCNNNNNNNGC	2 cut(s)	109, 224
NdeII	GATC	1 cut(s)	504
NlaIII	CATG	5 cut(s)	17, 116, 386, 404, 552
NlaIV	GGNNCC	1 cut(s)	24
NmuCI	GTSAC	1 cut(s)	73
NsiI	ATGCAT	1 cut(s)	257
NspI	RCATGY	2 cut(s)	17, 116
PkrI	GCNGC	3 cut(s)	57, 217, 493
Ppu21I	YACGTR	1 cut(s)	536
PspN4I	GGNNCC	1 cut(s)	24
PstI	CTGCAG	1 cut(s)	493
RsaI	GTAC	2 cut(s)	128, 534
RsaNI	GTAC	2 cut(s)	127, 533
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	3 cut(s)	56, 216, 492
Sau3AI	GATC	1 cut(s)	504
SetI	ASST	7 cut(s)	67, 210, 225, 339, 436, 496, 538
SfaNI	GCATC	4 cut(s)	94, 231, 445, 466
SfcI	CTRYAG	3 cut(s)	27, 429, 489
SnaBI	TACGTA	1 cut(s)	536
Sse9I	AATT	5 cut(s)	5, 198, 288, 366, 484
SsiI	CCGC	2 cut(s)	398, 508
SspI	AATATT	1 cut(s)	154
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	469
TaiI	ACGT	1 cut(s)	538
TaqI	TCGA	2 cut(s)	123, 248
TasI	AATT	5 cut(s)	5, 198, 288, 366, 484
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TscAI	CASTG	1 cut(s)	110
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	3 cut(s)	55, 215, 491
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	4 cut(s)	17, 158, 399, 554
TspRI	CASTG	1 cut(s)	110
XapI	RAATTY	2 cut(s)	5, 484
XceI	RCATGY	2 cut(s)	17, 116
Zsp2I	ATGCAT	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.