pycom04g07320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0013217
Physical Location & Seq
Forward (+)
7781396 .. 7784272
2877 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 723 bp
ATGGCTGCTCTAACTCTAAGCATTGGCATCGCCACCACCAGCTCTGCTCTACTTAAAAGGCCGACGCCGCGTCGTTCGAGGACCGCAAGAATTTCGTGCATTGGATGGGTACCCCTCAAACTCTGCTTCCCCAAAACTTCGAAGGACCCGGAGGGTGTATTGGGACCACCGCAGACGGGCCATTTGGCTCGGATAGAGTTCAAGAGGCGGTTGGAAAAAGACGCCGATGCTCGAGAAGAATTCGAACGTCAATCCCGGGTTGTGCCAGATACGGCGGAGGAGTTGATAGAGTACTTTCTCAACACTGAAGCTCGGGAGATTGAGTTCGAGATTTCGAGGTTGAGGCCAAGATTGGACAAGGTGTTTTTCTCACACCTACAATATGAGCTAGGTCAGCTTCGGTTTGCTGTTTCAAAAACTCAGGATATAGAAGATAGATTGATTGAGCTGGAAGCATTGCAGAAGGCCCTGCAGGAAGGGACAGAAGCATATGACAAACTGCAAACCGACCTCATTAAAGCAAAGCTAAGTCTGACCAAAGTCCTGTCTTCAAGGGATGTAAAATCAACTTTACTAGAGATGGTTGAACACAATGAGCTGAATAGATCCTTCTTGACTCTTCTTGATGAAAACATAGCAAATGCGCACAAGGGTAACCAGAAGCAAGCAGCAGAGTTCATGGAAAAGGTTCGTGGGGCTGTTCTCAAGTACATCACAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

27.35

Weight (kDa)

8.45

Isoelectric Point (pI)

55.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013217)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62780
fragaria_vesca FvH4_5g00440 FvH4_5g00440 FvH4_5g00440
malus_domestica MD04G1081100.v1.1
prunus_persica Prupe.5G077000_v2.0.a1
pyrus_communis pycom04g07320
rosa_chinensis RchiOBHm_Chr7g0202061
rosa_laevigata RLG00000003628
rosa_multiflora Rmu_sc0006592.1_g000010 Rmu_sc0010587.1_g000002
rosa_roxburghii Rroxscaffold_3G00254890
rosa_rugosa Rorug07G0067700
rosa_samantha Rh7AG195100 Rh7BG196500 Rh7CG206300 Rh7DG201700
rosa_wichuraiana Rw7G017090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 645
Acc65I GGTACC 1 cut(s) 109
AccB1I GGYRCC 1 cut(s) 109
AccII CGCG 1 cut(s) 70
AciI CCGC 5 cut(s) 68, 84, 170, 208, 275
AclWI GGATC 1 cut(s) 600
AcsI RAATTY 2 cut(s) 90, 239
AcuI CTGAAG 1 cut(s) 327
AcyI GRCGYC 2 cut(s) 65, 222
AfaI GTAC 3 cut(s) 111, 293, 710
AfiI CCNNNNNNNGG 1 cut(s) 176
AgsI TTSAA 4 cut(s) 202, 414, 552, 587
AhdI GACNNNNNGTC 1 cut(s) 69
AloI GAACNNNNNNTCC 2 cut(s) 308, 340
AluBI AGCT 8 cut(s) 42, 311, 388, 397, 448, 526, 598, 719
AluI AGCT 8 cut(s) 42, 311, 388, 397, 448, 526, 598, 719
AlwI GGATC 1 cut(s) 600
Ama87I CYCGRG 3 cut(s) 231, 255, 312
AoxI GGCC 4 cut(s) 59, 178, 344, 465
ApeKI GCWGC 2 cut(s) 5, 668
ApoI RAATTY 2 cut(s) 90, 239
ArsI GACNNNNNNTTYG 2 cut(s) 166, 198
Asp700I GAANNNNTTC 1 cut(s) 687
Asp718I GGTACC 1 cut(s) 109
AspLEI GCGC 1 cut(s) 646
AspS9I GGNCC 5 cut(s) 81, 145, 164, 178, 466
AsuC2I CCSGG 3 cut(s) 149, 256, 257
AsuII TTCGAA 2 cut(s) 140, 243
AvaI CYCGRG 3 cut(s) 231, 255, 312
AvaII GGWCC 3 cut(s) 81, 145, 164
BanI GGYRCC 1 cut(s) 109
BbsI GAAGAC 1 cut(s) 540
BbvI GCAGC 1 cut(s) 680
BccI CCATC 2 cut(s) 99, 574
BceAI ACGGC 1 cut(s) 288
BcgI CGANNNNNNTGC 4 cut(s) 10, 44, 75, 109
BcnI CCSGG 3 cut(s) 149, 256, 257
BfaI CTAG 2 cut(s) 389, 575
BfmI CTRYAG 1 cut(s) 470
BisI GCNGC 3 cut(s) 6, 68, 669
BlsI GCNGC 3 cut(s) 7, 69, 670
BmcAI AGTACT 1 cut(s) 293
Bme1390I CCNGG 3 cut(s) 149, 256, 257
Bme18I GGWCC 3 cut(s) 81, 145, 164
BmeRI GACNNNNNGTC 1 cut(s) 69
BmeT110I CYCGRG 3 cut(s) 231, 255, 312
BmgT120I GGNCC 5 cut(s) 81, 145, 164, 178, 466
BmiI GGNNCC 3 cut(s) 111, 147, 165
BmrFI CCNGG 3 cut(s) 149, 256, 257
BmsI GCATC 2 cut(s) 36, 217
BoxI GACNNNNGTC 1 cut(s) 539
BpiI GAAGAC 1 cut(s) 540
Bpu14I TTCGAA 2 cut(s) 140, 243
BpuEI CTTGAG 1 cut(s) 689
BpuMI CCSGG 3 cut(s) 149, 256, 257
BsaHI GRCGYC 2 cut(s) 65, 222
BsaJI CCNNGG 1 cut(s) 255
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 1 cut(s) 176
Bse3DI GCAATG 1 cut(s) 455
BseDI CCNNGG 1 cut(s) 255
BseGI GGATG 2 cut(s) 110, 562
BseLI CCNNNNNNNGG 1 cut(s) 176
BseMI GCAATG 1 cut(s) 455
BseMII CTCAG 1 cut(s) 434
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 1 cut(s) 680
Bsh1236I CGCG 1 cut(s) 70
BshFI GGCC 4 cut(s) 61, 180, 346, 467
BshNI GGYRCC 1 cut(s) 109
BsiHKCI CYCGRG 3 cut(s) 231, 255, 312
BsiSI CCGG 2 cut(s) 149, 256
BslFI GGGAC 2 cut(s) 177, 493
BslI CCNNNNNNNGG 1 cut(s) 176
BsmFI GGGAC 2 cut(s) 177, 493
BsnI GGCC 4 cut(s) 61, 180, 346, 467
BsoBI CYCGRG 3 cut(s) 231, 255, 312
Bsp119I TTCGAA 2 cut(s) 140, 243
Bsp143I GATC 1 cut(s) 605
BspACI CCGC 5 cut(s) 68, 84, 170, 208, 275
BspANI GGCC 4 cut(s) 61, 180, 346, 467
BspCNI CTCAG 1 cut(s) 433
BspFNI CGCG 1 cut(s) 70
BspLI GGNNCC 3 cut(s) 111, 147, 165
BspMAI CTGCAG 1 cut(s) 474
BspPI GGATC 1 cut(s) 600
BspT104I TTCGAA 2 cut(s) 140, 243
BspT107I GGYRCC 1 cut(s) 109
BsrDI GCAATG 1 cut(s) 455
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 1 cut(s) 605
BssNI GRCGYC 2 cut(s) 65, 222
Bst6I CTCTTC 1 cut(s) 624
BstACI GRCGYC 2 cut(s) 65, 222
BstBI TTCGAA 2 cut(s) 140, 243
BstC8I GCNNGC 1 cut(s) 666
BstDEI CTNAG 4 cut(s) 17, 420, 527, 720
BstEII GGTNACC 1 cut(s) 653
BstF5I GGATG 2 cut(s) 110, 562
BstFNI CGCG 1 cut(s) 70
BstHHI GCGC 1 cut(s) 646
BstKTI GATC 1 cut(s) 608
BstMBI GATC 1 cut(s) 605
BstMWI GCNNNNNNNGC 2 cut(s) 67, 394
BstPAI GACNNNNGTC 1 cut(s) 539
BstPI GGTNACC 1 cut(s) 653
BstSCI CCNGG 3 cut(s) 147, 254, 255
BstSFI CTRYAG 1 cut(s) 470
BstUI CGCG 1 cut(s) 70
BstV1I GCAGC 1 cut(s) 680
BstV2I GAAGAC 1 cut(s) 540
BstX2I RGATCY 1 cut(s) 605
BstYI RGATCY 1 cut(s) 605
BsuRI GGCC 4 cut(s) 61, 180, 346, 467
BtgZI GCGATG 1 cut(s) 13
BtsCI GGATG 2 cut(s) 110, 562
BtsIMutI CAGTG 1 cut(s) 303
Cac8I GCNNGC 1 cut(s) 666
CfoI GCGC 1 cut(s) 646
Cfr13I GGNCC 5 cut(s) 81, 145, 164, 178, 466
Cfr9I CCCGGG 1 cut(s) 255
CseI GACGC 3 cut(s) 59, 73, 230
Csp6I GTAC 3 cut(s) 110, 292, 709
CviAII CATG 1 cut(s) 679
CviQI GTAC 3 cut(s) 110, 292, 709
DdeI CTNAG 4 cut(s) 17, 420, 527, 720
DpnI GATC 1 cut(s) 607
DpnII GATC 1 cut(s) 605
DriI GACNNNNNGTC 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 624
Eam1105I GACNNNNNGTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 624
EciI GGCGGA 1 cut(s) 290
Eco47I GGWCC 3 cut(s) 81, 145, 164
Eco57I CTGAAG 1 cut(s) 327
Eco88I CYCGRG 3 cut(s) 231, 255, 312
Eco91I GGTNACC 1 cut(s) 653
EcoO109I RGGNCCY 2 cut(s) 145, 466
EcoO65I GGTNACC 1 cut(s) 653
EcoRI GAATTC 1 cut(s) 239
FaeI CATG 1 cut(s) 682
FaiI YATR 6 cut(s) 384, 428, 490, 492, 635, 680
FaqI GGGAC 2 cut(s) 177, 493
FatI CATG 1 cut(s) 678
FauNDI CATATG 1 cut(s) 490
Fnu4HI GCNGC 3 cut(s) 6, 68, 669
FokI GGATG 2 cut(s) 117, 569
Fsp4HI GCNGC 3 cut(s) 6, 68, 669
FspAI RTGCGCAY 1 cut(s) 645
FspBI CTAG 2 cut(s) 389, 575
FspI TGCGCA 1 cut(s) 645
GlaI GCGC 1 cut(s) 645
GluI GCNGC 3 cut(s) 6, 68, 669
HaeIII GGCC 4 cut(s) 61, 180, 346, 467
HapII CCGG 2 cut(s) 149, 256
HgaI GACGC 3 cut(s) 59, 73, 230
HhaI GCGC 1 cut(s) 646
Hin1I GRCGYC 2 cut(s) 65, 222
Hin1II CATG 1 cut(s) 682
Hin6I GCGC 1 cut(s) 644
HinP1I GCGC 1 cut(s) 644
HinfI GANTC 1 cut(s) 616
HpaII CCGG 2 cut(s) 149, 256
Hpy188I TCNGA 2 cut(s) 192, 534
Hpy188III TCNNGA 7 cut(s) 202, 233, 314, 328, 422, 613, 623
Hpy99I CGWCG 2 cut(s) 67, 75
HpyAV CCTTC 4 cut(s) 136, 457, 470, 619
HpyCH4IV ACGT 1 cut(s) 247
HpyCH4V TGCA 4 cut(s) 99, 460, 472, 502
HpyF10VI GCNNNNNNNGC 2 cut(s) 67, 394
HpyF3I CTNAG 4 cut(s) 17, 420, 527, 720
HpySE526I ACGT 1 cut(s) 247
Hsp92I GRCGYC 2 cut(s) 65, 222
Hsp92II CATG 1 cut(s) 682
HspAI GCGC 1 cut(s) 644
KpnI GGTACC 1 cut(s) 113
Kzo9I GATC 1 cut(s) 605
Lsp1109I GCAGC 1 cut(s) 680
LweI GCATC 2 cut(s) 36, 217
MaeI CTAG 2 cut(s) 389, 575
MaeII ACGT 1 cut(s) 247
MaeIII GTNAC 1 cut(s) 653
MalI GATC 1 cut(s) 607
MboI GATC 1 cut(s) 605
MboII GAAGA 4 cut(s) 248, 443, 540, 611
MflI RGATCY 1 cut(s) 605
MluCI AATT 2 cut(s) 90, 239
MlyI GAGTC 1 cut(s) 610
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 8 cut(s) 72, 125, 145, 198, 271, 330, 336, 521
MroXI GAANNNNTTC 1 cut(s) 687
MseI TTAA 2 cut(s) 54, 516
MspI CCGG 2 cut(s) 149, 256
MspR9I CCNGG 3 cut(s) 149, 256, 257
MvnI CGCG 1 cut(s) 70
MwoI GCNNNNNNNGC 2 cut(s) 67, 394
NciI CCSGG 3 cut(s) 149, 256, 257
NdeI CATATG 1 cut(s) 490
NdeII GATC 1 cut(s) 605
NlaIII CATG 1 cut(s) 682
NlaIV GGNNCC 3 cut(s) 111, 147, 165
NsbI TGCGCA 1 cut(s) 645
NspV TTCGAA 2 cut(s) 140, 243
PaeR7I CTCGAG 1 cut(s) 231
PdmI GAANNNNTTC 1 cut(s) 687
PkrI GCNGC 3 cut(s) 7, 69, 670
PleI GAGTC 1 cut(s) 610
PpsI GAGTC 1 cut(s) 610
PpuMI RGGWCCY 1 cut(s) 145
PshAI GACNNNNGTC 1 cut(s) 539
Psp5II RGGWCCY 1 cut(s) 145
PspEI GGTNACC 1 cut(s) 653
PspN4I GGNNCC 3 cut(s) 111, 147, 165
PspPI GGNCC 5 cut(s) 81, 145, 164, 178, 466
PspPPI RGGWCCY 1 cut(s) 145
PstI CTGCAG 1 cut(s) 474
PsuI RGATCY 1 cut(s) 605
RsaI GTAC 3 cut(s) 111, 293, 710
RsaNI GTAC 3 cut(s) 110, 292, 709
SaqAI TTAA 2 cut(s) 54, 516
SatI GCNGC 3 cut(s) 6, 68, 669
Sau3AI GATC 1 cut(s) 605
Sau96I GGNCC 5 cut(s) 81, 145, 164, 178, 466
SbfI CCTGCAGG 1 cut(s) 474
ScaI AGTACT 1 cut(s) 293
SchI GAGTC 1 cut(s) 610
ScrFI CCNGG 3 cut(s) 149, 256, 257
SdaI CCTGCAGG 1 cut(s) 474
SfaNI GCATC 2 cut(s) 36, 217
SfcI CTRYAG 1 cut(s) 470
Sfr274I CTCGAG 1 cut(s) 231
SfuI TTCGAA 2 cut(s) 140, 243
SinI GGWCC 3 cut(s) 81, 145, 164
SlaI CTCGAG 1 cut(s) 231
SmaI CCCGGG 1 cut(s) 257
SmlI CTYRAG 2 cut(s) 231, 704
SmoI CTYRAG 2 cut(s) 231, 704
Sse8387I CCTGCAGG 1 cut(s) 474
Sse9I AATT 2 cut(s) 90, 239
SsiI CCGC 5 cut(s) 68, 84, 170, 208, 275
SspMI CTAG 2 cut(s) 389, 575
StyD4I CCNGG 3 cut(s) 147, 254, 255
TaiI ACGT 1 cut(s) 250
TaqI TCGA 6 cut(s) 77, 140, 232, 243, 327, 335
TasI AATT 2 cut(s) 90, 239
TatI WGTACW 2 cut(s) 291, 708
TauI GCSGC 1 cut(s) 70
Tru1I TTAA 2 cut(s) 54, 516
Tru9I TTAA 2 cut(s) 54, 516
TscAI CASTG 1 cut(s) 310
TseI GCWGC 2 cut(s) 5, 668
TspDTI ATGAA 2 cut(s) 642, 667
TspMI CCCGGG 1 cut(s) 255
TspRI CASTG 1 cut(s) 310
VpaK11BI GGWCC 3 cut(s) 81, 145, 164
XapI RAATTY 2 cut(s) 90, 239
XhoI CTCGAG 1 cut(s) 231
XmaI CCCGGG 1 cut(s) 255
XmnI GAANNNNTTC 1 cut(s) 687
XspI CTAG 2 cut(s) 389, 575
ZrmI AGTACT 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.