pycom04g07350

Alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic mitochondrial

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0015162
Physical Location & Seq
Reverse (-)
7836264 .. 7837445
1182 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1182 bp
ATGCTGTATGAGCTTCTTACAGGAGAAGTAGACGCATGGGAGATAGCTCCTCGTTTCTCAGACTTACTGGCAAATACAAGTGTGCTGTTCCATCAAGATAAGGCCAAACTATTGTATCCCTCTGACCATTATGGACCTACACAATCCAGCCTTGGGGGAACTGTGCTACTTGAGAGTGGACTCCTTGTTCAATACGACTGGCTGGTTCTTGCTTTGGGAGCTGAATCAAAGCTTGATGTTGTACCAGGAGCAGTAGAGTTTGCATTGCCATTCTCCACCCTGGAGGATGCTCATAAGGTAGATCGTAAGTTAAAAACATTGGAGAGGAAGAACTTCCGTAAGGAATCTTTGATTCGTGTGGTTGTTGTTGGTTGTGGTTACTCTGGAGTTGAGTTAGCTGCCACTGTATCAGAGAGACTGCAGGATAGAGGTATAGTACAAGCAATTAATGTGGAAACCACAATCTGCCCGAATGCCCCACCTGGCAATAGGGAAGCTGCAATTAAAGTACTCACATCGAGAAAAGTTGAACTTCTGTTGGGTTATGTTGTCCAGTGTATTCGTAGAGCTGTTGATGCAGAACATGATTCCGAGAAATATATATTGGAACTTCAACCTGCTCAAAGGGGATCGCAAAGTCAAACTGTGGAAGCAGATCTTGTATTATGGACTGTTGGGAACAAATATCTTCTTCCTCAGCTGGAACCCGAGGACAGGCCCCATGAGCTTCCCCTAAATGCTCGTGGACAAGCAGAAACAGATGAAAATCTTCGCGTTAAAGGCCATCCACGCATATTTGCTGTTGGTGACTCTTGTGCTCTAAGGGAATCAAATGGAAGGCTTCTTCCTGCCACCGCACAGGTTGCTTTTCAGCAAGCAGACTTTGCTGGTTGGAATCTGTGGGCTGCAATCAATGACCGCCCTCTTTTACCATTTAAGTTTCAGAATTTAGGTGAAATGATAACTCTGGGAAGAAATGATGCTGCTATTTCTCCAAGTTTCATTGAGGGGCTAACTTTAGAAGGTCCTATTGGCCATACGGCGAGGAAATTAGCTTACTTGATTAGATTACCAACGGATGAGCATAGGCTTAAAGTAGGAATCAGCTGGCTCACAAAATCTGCTATAGATTCGGTTGCATCTCTGCAGAGCACCCTGACTAAGGTCCTTTCAAACTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3 Pyr_redox_2

Protein Analysis

394

Amino Acids

43.29

Weight (kDa)

5.72

Isoelectric Point (pI)

34.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyr_redox_2 PF07992 58 - 293 2.1e-26 Pyridine nucleotide-disulphide oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08740
fragaria_vesca FvH4_5g00410
malus_domestica MD04G1081700.v1.1
prunus_persica Prupe.5G076700_v2.0.a1 Prupe.5G076700_v2.0.a1
pyrus_communis pycom04g07350
rosa_chinensis RchiOBHm_Chr7g0202111
rosa_laevigata RLG00000003625
rosa_multiflora Rmu_ssc0000228.1_g000001
rosa_roxburghii Rroxscaffold_3G00254850
rosa_rugosa Rorug07G0068000
rosa_samantha Rh7AG195500 Rh7BG196800 Rh7CG206600 Rh7DG202100
rosa_wichuraiana Rw7G017120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 625
AccI GTMKAC 1 cut(s) 30
AccII CGCG 1 cut(s) 774
AciI CCGC 2 cut(s) 855, 919
AclWI GGATC 1 cut(s) 637
AcoI YGGCCR 1 cut(s) 1033
AcsI RAATTY 1 cut(s) 946
AfaI GTAC 3 cut(s) 243, 438, 510
AfiI CCNNNNNNNGG 3 cut(s) 153, 714, 1162
AgsI TTSAA 4 cut(s) 191, 530, 614, 1173
AjnI CCWGG 3 cut(s) 244, 279, 481
AjuI GAANNNNNNNTTGG 4 cut(s) 587, 619, 1014, 1046
AloI GAACNNNNNNTCC 2 cut(s) 171, 203
Alw21I GWGCWC 2 cut(s) 820, 1154
Alw26I GTCTC 1 cut(s) 409
AlwI GGATC 1 cut(s) 637
Ama87I CYCGRG 1 cut(s) 707
AoxI GGCC 4 cut(s) 102, 716, 781, 1033
ApeKI GCWGC 4 cut(s) 398, 497, 905, 983
ApoI RAATTY 1 cut(s) 946
AseI ATTAAT 1 cut(s) 447
Asp700I GAANNNNTTC 2 cut(s) 332, 768
AspS9I GGNCC 4 cut(s) 134, 717, 1025, 1165
AsuHPI GGTGA 2 cut(s) 818, 965
AvaI CYCGRG 1 cut(s) 707
AvaII GGWCC 3 cut(s) 134, 1025, 1165
BaeI ACNNNNGTAYC 2 cut(s) 98, 131
BalI TGGCCA 1 cut(s) 1035
BauI CACGAG 1 cut(s) 741
Bbv12I GWGCWC 2 cut(s) 820, 1154
BbvCI CCTCAGC 1 cut(s) 696
BbvI GCAGC 4 cut(s) 385, 484, 892, 970
BccI CCATC 2 cut(s) 99, 792
BceAI ACGGC 1 cut(s) 1056
BciT130I CCWGG 3 cut(s) 246, 281, 483
BciVI GTATCC 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 409
BfmI CTRYAG 3 cut(s) 419, 1125, 1145
BfuAI ACCTGC 1 cut(s) 625
BfuI GTATCC 1 cut(s) 126
BglII AGATCT 1 cut(s) 655
BisI GCNGC 4 cut(s) 399, 498, 906, 984
BlsI GCNGC 4 cut(s) 400, 499, 907, 985
BmcAI AGTACT 1 cut(s) 510
Bme1390I CCNGG 3 cut(s) 246, 281, 483
Bme18I GGWCC 3 cut(s) 134, 1025, 1165
BmeT110I CYCGRG 1 cut(s) 707
BmgT120I GGNCC 4 cut(s) 134, 717, 1025, 1165
BmiI GGNNCC 2 cut(s) 705, 719
BmrFI CCNGG 3 cut(s) 246, 281, 483
BmsI GCATC 4 cut(s) 277, 565, 970, 1148
BoxI GACNNNNGTC 1 cut(s) 1163
BpmI CTGGAG 2 cut(s) 302, 405
Bpu10I CCTNAGC 1 cut(s) 696
BpuEI CTTGAG 1 cut(s) 191
BsaBI GATNNNNATC 1 cut(s) 765
BsaJI CCNNGG 3 cut(s) 151, 279, 708
Bsc4I CCNNNNNNNGG 3 cut(s) 153, 714, 1162
Bse1I ACTGG 3 cut(s) 72, 203, 553
Bse3DI GCAATG 1 cut(s) 263
Bse8I GATNNNNATC 1 cut(s) 765
BseBI CCWGG 3 cut(s) 246, 281, 483
BseDI CCNNGG 3 cut(s) 151, 279, 708
BseGI GGATG 3 cut(s) 292, 784, 1084
BseJI GATNNNNATC 1 cut(s) 765
BseLI CCNNNNNNNGG 3 cut(s) 153, 714, 1162
BseMI GCAATG 1 cut(s) 263
BseMII CTCAG 2 cut(s) 72, 710
BseNI ACTGG 3 cut(s) 72, 203, 553
BseRI GAGGAG 1 cut(s) 39
BseXI GCAGC 4 cut(s) 385, 484, 892, 970
Bsh1236I CGCG 1 cut(s) 774
BshFI GGCC 4 cut(s) 104, 718, 783, 1035
BsiHKAI GWGCWC 2 cut(s) 820, 1154
BsiHKCI CYCGRG 1 cut(s) 707
BslI CCNNNNNNNGG 3 cut(s) 153, 714, 1162
BsmAI GTCTC 1 cut(s) 409
BsmI GAATGC 1 cut(s) 478
BsnI GGCC 4 cut(s) 104, 718, 783, 1035
BsoBI CYCGRG 1 cut(s) 707
Bsp1286I GDGCHC 2 cut(s) 820, 1154
Bsp143I GATC 3 cut(s) 301, 629, 655
BspACI CCGC 2 cut(s) 855, 919
BspANI GGCC 4 cut(s) 104, 718, 783, 1035
BspCNI CTCAG 2 cut(s) 71, 709
BspFNI CGCG 1 cut(s) 774
BspHI TCATGA 1 cut(s) 1178
BspLI GGNNCC 2 cut(s) 705, 719
BspMAI CTGCAG 2 cut(s) 423, 1149
BspMI ACCTGC 1 cut(s) 625
BspPI GGATC 1 cut(s) 637
BsrDI GCAATG 1 cut(s) 263
BsrI ACTGG 3 cut(s) 72, 203, 553
BssECI CCNNGG 3 cut(s) 151, 279, 708
BssMI GATC 3 cut(s) 301, 629, 655
BssSI CACGAG 1 cut(s) 741
BssT1I CCWWGG 1 cut(s) 151
Bst2BI CACGAG 1 cut(s) 741
Bst2UI CCWGG 3 cut(s) 246, 281, 483
Bst4CI ACNGT 4 cut(s) 163, 406, 646, 673
BstAPI GCANNNNNTGC 2 cut(s) 863, 884
BstC8I GCNNGC 2 cut(s) 876, 1109
BstDEI CTNAG 4 cut(s) 58, 696, 821, 1161
BstENI CCTNNNNNAGG 1 cut(s) 1160
BstF5I GGATG 3 cut(s) 292, 784, 1084
BstFNI CGCG 1 cut(s) 774
BstKTI GATC 3 cut(s) 304, 632, 658
BstMAI GTCTC 1 cut(s) 409
BstMBI GATC 3 cut(s) 301, 629, 655
BstMWI GCNNNNNNNGC 8 cut(s) 10, 218, 575, 724, 780, 789, 863, 884
BstNI CCWGG 3 cut(s) 246, 281, 483
BstPAI GACNNNNGTC 1 cut(s) 1163
BstSCI CCNGG 3 cut(s) 244, 279, 481
BstSFI CTRYAG 3 cut(s) 419, 1125, 1145
BstUI CGCG 1 cut(s) 774
BstV1I GCAGC 4 cut(s) 385, 484, 892, 970
BstX2I RGATCY 1 cut(s) 655
BstYI RGATCY 1 cut(s) 655
BsuI GTATCC 1 cut(s) 126
BsuRI GGCC 4 cut(s) 104, 718, 783, 1035
BtsCI GGATG 3 cut(s) 292, 784, 1084
BtsIMutI CAGTG 2 cut(s) 402, 560
BveI ACCTGC 1 cut(s) 625
Cac8I GCNNGC 2 cut(s) 876, 1109
CciI TCATGA 1 cut(s) 1178
Cfr13I GGNCC 4 cut(s) 134, 717, 1025, 1165
CseI GACGC 1 cut(s) 41
Csp6I GTAC 3 cut(s) 242, 437, 509
CspCI CAANNNNNGTGG 2 cut(s) 432, 467
CviAII CATG 4 cut(s) 36, 584, 722, 1179
CviQI GTAC 3 cut(s) 242, 437, 509
DdeI CTNAG 4 cut(s) 58, 696, 821, 1161
DpnI GATC 3 cut(s) 303, 631, 657
DpnII GATC 3 cut(s) 301, 629, 655
EaeI YGGCCR 1 cut(s) 1033
Eco130I CCWWGG 1 cut(s) 151
Eco47I GGWCC 3 cut(s) 134, 1025, 1165
Eco88I CYCGRG 1 cut(s) 707
EcoNI CCTNNNNNAGG 1 cut(s) 1160
EcoO109I RGGNCCY 3 cut(s) 717, 1025, 1165
EcoRII CCWGG 3 cut(s) 244, 279, 481
EcoT14I CCWWGG 1 cut(s) 151
ErhI CCWWGG 1 cut(s) 151
FaeI CATG 4 cut(s) 39, 587, 725, 1182
FalI AAGNNNNNCTT 4 cut(s) 516, 548, 642, 674
FatI CATG 4 cut(s) 35, 583, 721, 1178
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 4 cut(s) 399, 498, 906, 984
FokI GGATG 3 cut(s) 299, 771, 1091
Fsp4HI GCNGC 4 cut(s) 399, 498, 906, 984
GluI GCNGC 4 cut(s) 399, 498, 906, 984
GsuI CTGGAG 2 cut(s) 302, 405
HaeIII GGCC 4 cut(s) 104, 718, 783, 1035
HgaI GACGC 1 cut(s) 41
Hin1II CATG 4 cut(s) 39, 587, 725, 1182
HindIII AAGCTT 1 cut(s) 230
HphI GGTGA 2 cut(s) 818, 965
Hpy166II GTNNAC 3 cut(s) 31, 179, 746
Hpy188I TCNGA 5 cut(s) 61, 124, 412, 592, 945
Hpy188III TCNNGA 4 cut(s) 95, 384, 519, 1179
Hpy8I GTNNAC 3 cut(s) 31, 179, 746
HpyAV CCTTC 2 cut(s) 831, 1016
HpyCH4III ACNGT 4 cut(s) 163, 406, 646, 673
HpyCH4V TGCA 7 cut(s) 263, 421, 500, 578, 908, 1139, 1147
HpyF10VI GCNNNNNNNGC 8 cut(s) 10, 218, 575, 724, 780, 789, 863, 884
HpyF3I CTNAG 4 cut(s) 58, 696, 821, 1161
Hsp92II CATG 4 cut(s) 39, 587, 725, 1182
Kzo9I GATC 3 cut(s) 301, 629, 655
LmnI GCTCC 3 cut(s) 52, 218, 248
Lsp1109I GCAGC 4 cut(s) 385, 484, 892, 970
LweI GCATC 4 cut(s) 277, 565, 970, 1148
MaeIII GTNAC 2 cut(s) 377, 806
MalI GATC 3 cut(s) 303, 631, 657
MboI GATC 3 cut(s) 301, 629, 655
MboII GAAGA 6 cut(s) 340, 680, 683, 761, 836, 984
MflI RGATCY 1 cut(s) 655
MhlI GDGCHC 2 cut(s) 820, 1154
MlsI TGGCCA 1 cut(s) 1035
MluCI AATT 4 cut(s) 444, 501, 946, 1049
MluNI TGGCCA 1 cut(s) 1035
MlyI GAGTC 2 cut(s) 174, 803
MmeI TCCRAC 1 cut(s) 872
Mox20I TGGCCA 1 cut(s) 1035
MroXI GAANNNNTTC 2 cut(s) 332, 768
MscI TGGCCA 1 cut(s) 1035
MseI TTAA 6 cut(s) 311, 447, 504, 777, 936, 1092
Msp20I TGGCCA 1 cut(s) 1035
MspA1I CMGCKG 2 cut(s) 700, 1107
MspR9I CCNGG 3 cut(s) 246, 281, 483
Mva1269I GAATGC 1 cut(s) 478
MvaI CCWGG 3 cut(s) 246, 281, 483
MvnI CGCG 1 cut(s) 774
MwoI GCNNNNNNNGC 8 cut(s) 10, 218, 575, 724, 780, 789, 863, 884
NdeII GATC 3 cut(s) 301, 629, 655
NlaIII CATG 4 cut(s) 39, 587, 725, 1182
NlaIV GGNNCC 2 cut(s) 705, 719
NmuCI GTSAC 1 cut(s) 806
PagI TCATGA 1 cut(s) 1178
PctI GAATGC 1 cut(s) 478
PdmI GAANNNNTTC 2 cut(s) 332, 768
PfeI GAWTC 8 cut(s) 224, 344, 352, 587, 827, 895, 1101, 1130
PkrI GCNGC 4 cut(s) 400, 499, 907, 985
PleI GAGTC 2 cut(s) 174, 803
PpsI GAGTC 2 cut(s) 174, 803
PpuMI RGGWCCY 2 cut(s) 1025, 1165
PshAI GACNNNNGTC 1 cut(s) 1163
PshBI ATTAAT 1 cut(s) 447
Psp5II RGGWCCY 2 cut(s) 1025, 1165
Psp6I CCWGG 3 cut(s) 244, 279, 481
PspGI CCWGG 3 cut(s) 244, 279, 481
PspN4I GGNNCC 2 cut(s) 705, 719
PspPI GGNCC 4 cut(s) 134, 717, 1025, 1165
PspPPI RGGWCCY 2 cut(s) 1025, 1165
PstI CTGCAG 2 cut(s) 423, 1149
PsuI RGATCY 1 cut(s) 655
PvuII CAGCTG 2 cut(s) 700, 1107
RsaI GTAC 3 cut(s) 243, 438, 510
RsaNI GTAC 3 cut(s) 242, 437, 509
SaqAI TTAA 6 cut(s) 311, 447, 504, 777, 936, 1092
SatI GCNGC 4 cut(s) 399, 498, 906, 984
Sau3AI GATC 3 cut(s) 301, 629, 655
Sau96I GGNCC 4 cut(s) 134, 717, 1025, 1165
ScaI AGTACT 1 cut(s) 510
SchI GAGTC 2 cut(s) 174, 803
ScrFI CCNGG 3 cut(s) 246, 281, 483
SduI GDGCHC 2 cut(s) 820, 1154
SfaNI GCATC 4 cut(s) 277, 565, 970, 1148
SfcI CTRYAG 3 cut(s) 419, 1125, 1145
SinI GGWCC 3 cut(s) 134, 1025, 1165
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 4 cut(s) 444, 501, 946, 1049
SsiI CCGC 2 cut(s) 855, 919
StyD4I CCNGG 3 cut(s) 244, 279, 481
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 4 cut(s) 163, 406, 646, 673
TaqI TCGA 1 cut(s) 518
TasI AATT 4 cut(s) 444, 501, 946, 1049
TatI WGTACW 2 cut(s) 436, 508
TfiI GAWTC 8 cut(s) 224, 344, 352, 587, 827, 895, 1101, 1130
Tru1I TTAA 6 cut(s) 311, 447, 504, 777, 936, 1092
Tru9I TTAA 6 cut(s) 311, 447, 504, 777, 936, 1092
TscAI CASTG 2 cut(s) 409, 560
TseFI GTSAC 1 cut(s) 806
TseI GCWGC 4 cut(s) 398, 497, 905, 983
Tsp45I GTSAC 1 cut(s) 806
TspDTI ATGAA 2 cut(s) 777, 991
TspGWI ACGGA 2 cut(s) 326, 1091
TspRI CASTG 2 cut(s) 409, 560
VpaK11BI GGWCC 3 cut(s) 134, 1025, 1165
VspI ATTAAT 1 cut(s) 447
XagI CCTNNNNNAGG 1 cut(s) 1160
XapI RAATTY 1 cut(s) 946
XmiI GTMKAC 1 cut(s) 30
XmnI GAANNNNTTC 2 cut(s) 332, 768
ZrmI AGTACT 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.