Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0019283

Physical Location & Seq

Genomic Coordinates Forward (+)

16943541 .. 16945326

Gene Structure 1786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g14040.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGACAGTTCCTCCGAATCAAGATGATGTTAAGAAGAATGAAAGGACGAATTACTTCAATTCCCCTGCATTGGATGTCTCACTTGCTTTTCCACAAGCAACGCCGGCATCCACCTTTCCTCCCTGCGCCTCGGATTATTACCGGTTTGATGATCTATTGACTCCTGAGGAGCAGGCTATGAGATTGAGAGTAAGAAAGTGTATGGAGAAAGACGTCGCTCCAATTATGGCAGAGTACTGGGAGAAGGCACAGTTTCCATTTCAAATTATTCCAAAGCTTGCTGCATTGCGCATTGCTGGTGGCACAATCAAGGGTTATGGGTGTCCTGGTCTTTCTATTACGGCAAGTGCTTTTGCTACAGCTGAACTTGCTAGAGTTGATGCAAGCTGTTCTACTTTCGTCTTGGTTCATTCCTCACTAGCAATGCTTACTATTGCATTATGTGGTTCGGAAGCTCAAAAGCAGAAATATCTACCTTCTTTGGCTGAATTTAAGACTGTAGCCTGCTGGGGTTTGACCGAACCTGACTACGGAAGTGATGCGAGTGCCTTGAGAACGACAGCAACAAAGGTCAAGGATTTCAACCTTCCCATTTGCTTCTTTATTTCTGTTATTGGCCTAGTGTGGGCAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003997 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009514 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0022414 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046459 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

Acyl-CoA_dh_1 Acyl-CoA_dh_M Acyl-CoA_dh_N

Protein Analysis

212

Amino Acids

23.05

Weight (kDa)

5.88

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019283)

Species	Orthologous Gene IDs
malus_domestica	MD12G1169800.v1.1 MD12G1170600.v1.1
pyrus_communis	pycom04g14040 pycom12g10520 pycom12g16040 pycom12g16090 pycom16g21080
rosa_multiflora	Rmu_sc0011275.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	216
Acc16I	TGCGCA	1 cut(s)	290
AcsI	RAATTY	1 cut(s)	488
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	3 cut(s)	70, 530, 625
AgeI	ACCGGT	1 cut(s)	141
AgsI	TTSAA	3 cut(s)	58, 263, 583
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	4 cut(s)	277, 362, 387, 455
AluI	AGCT	4 cut(s)	277, 362, 387, 455
Alw26I	GTCTC	1 cut(s)	82
AoxI	GGCC	1 cut(s)	616
ApeKI	GCWGC	1 cut(s)	281
ApoI	RAATTY	1 cut(s)	488
AsiGI	ACCGGT	1 cut(s)	141
Asp700I	GAANNNNTTC	1 cut(s)	53
AspLEI	GCGC	2 cut(s)	128, 291
AxyI	CCTNAGG	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	268
BceAI	ACGGC	1 cut(s)	357
BciT130I	CCWGG	1 cut(s)	327
BcoDI	GTCTC	1 cut(s)	82
BfaI	CTAG	3 cut(s)	372, 419, 620
BfmI	CTRYAG	2 cut(s)	357, 498
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
BmcAI	AGTACT	1 cut(s)	236
Bme1390I	CCNGG	1 cut(s)	327
BmrFI	CCNGG	1 cut(s)	327
BmrI	ACTGGG	1 cut(s)	247
BmsI	GCATC	3 cut(s)	116, 370, 529
BmuI	ACTGGG	1 cut(s)	247
BpuEI	CTTGAG	1 cut(s)	571
BsaHI	GRCGYC	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	129
BsaWI	WCCGGW	1 cut(s)	141
BsaXI	ACNNNNNCTCC	3 cut(s)	25, 103, 133
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 530, 625
Bse118I	RCCGGY	2 cut(s)	103, 141
Bse1I	ACTGG	1 cut(s)	242
Bse21I	CCTNAGG	1 cut(s)	165
Bse3DI	GCAATG	3 cut(s)	284, 291, 429
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	2 cut(s)	79, 107
BseLI	CCNNNNNNNGG	3 cut(s)	70, 530, 625
BseMI	GCAATG	3 cut(s)	284, 291, 429
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	1 cut(s)	242
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	268
BseYI	CCCAGC	1 cut(s)	507
BshFI	GGCC	1 cut(s)	618
BshTI	ACCGGT	1 cut(s)	141
BsiSI	CCGG	2 cut(s)	104, 142
BslI	CCNNNNNNNGG	3 cut(s)	70, 530, 625
BsmAI	GTCTC	1 cut(s)	82
BsnI	GGCC	1 cut(s)	618
Bsp143I	GATC	1 cut(s)	151
BspANI	GGCC	1 cut(s)	618
BspCNI	CTCAG	1 cut(s)	157
BsrDI	GCAATG	3 cut(s)	284, 291, 429
BsrFI	RCCGGY	2 cut(s)	103, 141
BsrI	ACTGG	1 cut(s)	242
BssAI	RCCGGY	2 cut(s)	103, 141
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	1 cut(s)	151
BssNI	GRCGYC	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	3 cut(s)	7, 252, 499
BstACI	GRCGYC	1 cut(s)	213
BstC8I	GCNNGC	5 cut(s)	105, 174, 279, 385, 505
BstDEI	CTNAG	1 cut(s)	165
BstF5I	GGATG	2 cut(s)	79, 107
BstHHI	GCGC	2 cut(s)	128, 291
BstKTI	GATC	1 cut(s)	154
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	151
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 368
BstNI	CCWGG	1 cut(s)	327
BstSCI	CCNGG	1 cut(s)	325
BstSFI	CTRYAG	2 cut(s)	357, 498
BstV1I	GCAGC	1 cut(s)	268
Bsu36I	CCTNAGG	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	618
BtsCI	GGATG	2 cut(s)	79, 107
Cac8I	GCNNGC	5 cut(s)	105, 174, 279, 385, 505
CfoI	GCGC	2 cut(s)	128, 291
Cfr10I	RCCGGY	2 cut(s)	103, 141
Csp6I	GTAC	1 cut(s)	235
CspAI	ACCGGT	1 cut(s)	141
CviJI	RGCY	8 cut(s)	176, 277, 362, 387, 455, 485, 503, 618
CviKI_1	RGCY	8 cut(s)	176, 277, 362, 387, 455, 485, 503, 618
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
Eco81I	CCTNAGG	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	325
FaiI	YATR	5 cut(s)	179, 203, 227, 318, 442
Fnu4HI	GCNGC	1 cut(s)	282
FokI	GGATG	2 cut(s)	86, 94
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	3 cut(s)	372, 419, 620
FspI	TGCGCA	1 cut(s)	290
GlaI	GCGC	2 cut(s)	127, 290
GluI	GCNGC	1 cut(s)	282
GsaI	CCCAGC	1 cut(s)	511
HaeIII	GGCC	1 cut(s)	618
HapII	CCGG	2 cut(s)	104, 142
HhaI	GCGC	2 cut(s)	128, 291
Hin1I	GRCGYC	1 cut(s)	213
Hin6I	GCGC	2 cut(s)	126, 289
HinP1I	GCGC	2 cut(s)	126, 289
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	2 cut(s)	16, 160
HpaII	CCGG	2 cut(s)	104, 142
Hpy188I	TCNGA	3 cut(s)	15, 133, 451
Hpy188III	TCNNGA	2 cut(s)	20, 164
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	3 cut(s)	238, 486, 596
HpyCH4III	ACNGT	3 cut(s)	7, 252, 499
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	4 cut(s)	68, 284, 383, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 368
HpyF3I	CTNAG	1 cut(s)	165
HpySE526I	ACGT	1 cut(s)	213
Hsp92I	GRCGYC	1 cut(s)	213
HspAI	GCGC	2 cut(s)	126, 289
KroI	GCCGGC	1 cut(s)	103
KroNI	GCCGGC	1 cut(s)	105
Kzo9I	GATC	1 cut(s)	151
LmnI	GCTCC	2 cut(s)	169, 223
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	3 cut(s)	116, 370, 529
MaeI	CTAG	3 cut(s)	372, 419, 620
MaeII	ACGT	1 cut(s)	213
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	1 cut(s)	46
MluCI	AATT	5 cut(s)	49, 58, 222, 264, 488
MlyI	GAGTC	1 cut(s)	154
MnlI	CCTC	5 cut(s)	21, 129, 139, 160, 424
MroNI	GCCGGC	1 cut(s)	103
MroXI	GAANNNNTTC	1 cut(s)	53
MseI	TTAA	2 cut(s)	30, 492
MspA1I	CMGCKG	1 cut(s)	362
MspI	CCGG	2 cut(s)	104, 142
MspR9I	CCNGG	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	2 cut(s)	104, 368
NaeI	GCCGGC	1 cut(s)	105
NdeII	GATC	1 cut(s)	151
NgoMIV	GCCGGC	1 cut(s)	103
NsbI	TGCGCA	1 cut(s)	290
PdiI	GCCGGC	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	16
PinAI	ACCGGT	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	283
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	325
PspFI	CCCAGC	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	325
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SaqAI	TTAA	2 cut(s)	30, 492
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	1 cut(s)	151
ScaI	AGTACT	1 cut(s)	236
SchI	GAGTC	1 cut(s)	154
ScrFI	CCNGG	1 cut(s)	327
SfaNI	GCATC	3 cut(s)	116, 370, 529
SfcI	CTRYAG	2 cut(s)	357, 498
SmlI	CTYRAG	1 cut(s)	550
SmoI	CTYRAG	1 cut(s)	550
Sse9I	AATT	5 cut(s)	49, 58, 222, 264, 488
SspMI	CTAG	3 cut(s)	372, 419, 620
StyD4I	CCNGG	1 cut(s)	325
TaaI	ACNGT	3 cut(s)	7, 252, 499
TaiI	ACGT	1 cut(s)	216
TaqII	GACCGA	1 cut(s)	533
TasI	AATT	5 cut(s)	49, 58, 222, 264, 488
TatI	WGTACW	1 cut(s)	234
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	2 cut(s)	30, 492
Tru9I	TTAA	2 cut(s)	30, 492
TseI	GCWGC	1 cut(s)	281
TspDTI	ATGAA	2 cut(s)	54, 398
TspGWI	ACGGA	1 cut(s)	546
XapI	RAATTY	1 cut(s)	488
XmnI	GAANNNNTTC	1 cut(s)	53
XspI	CTAG	3 cut(s)	372, 419, 620
ZraI	GACGTC	1 cut(s)	214
ZrmI	AGTACT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.