Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0019283

Physical Location & Seq

Genomic Coordinates Forward (+)

18520419 .. 18521874

Gene Structure 1456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g16090.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAGAGGGCGAATTACTTCAATACCGCTGCATTGGATGCCTCAGTTGCTTTTCCGCAAGCAACGCCGGCTTCTATTTTTCCTCCCTGCAGGTGTATGGAGAAGGACGTTACTCCAATTATGGCAGAGTATTGGGAGAAGGCAGAGTTTCCATTTCAAATTATTCCAAAGTTTGGTGCATTGCGCATTGCTCATTGCTGGTGAGACAATCAAGGGTTATGGATGTCCTGGTCTTTCTATTACGGCAAATGCTTTTACTACTGCTGAAATTGCTAGAGTTGATGCAAGCTGTTCTACTTTCTTCTTGGTTCATTCCTCACTAGCAATGCTTACTATTTCATTATGTGGGTCGGAGGCTCAAAAGCAGAAATATCTACCTTCTTTGGCCGAATTTAAGACTGTCGCCTGTTGGGGTTTGACTGAGCCTGACTATGGAAGTGATGCGAGTGCCTTGAGAGCGAGAGCAACAAAGGTCAAGGATTTCAACCTTCTCATTTGCTTCTTTAATTCTGTTAAATGGTATTATCATGCTCTTTTGGTTTTTGGGTGTCATGGCTCCAATCATGCTATATCATGTATTCTTGTGTTGTTGGGATCGTCAGGTGGAAGGAGGTTGGGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003997 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009514 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0022414 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046459 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

Acyl-CoA_dh_1 Acyl-CoA_dh_M Acyl-CoA_dh_N

Protein Analysis

208

Amino Acids

23.11

Weight (kDa)

9.86

Isoelectric Point (pI)

50.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019283)

Species	Orthologous Gene IDs
malus_domestica	MD12G1169800.v1.1 MD12G1170600.v1.1
pyrus_communis	pycom04g14040 pycom12g10520 pycom12g16040 pycom12g16090 pycom16g21080
rosa_multiflora	Rmu_sc0011275.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	80
Acc16I	TGCGCA	1 cut(s)	184
Acc36I	ACCTGC	1 cut(s)	80
AccB7I	CCANNNNNTGG	1 cut(s)	172
AciI	CCGC	2 cut(s)	26, 55
AclWI	GGATC	1 cut(s)	601
AcoI	YGGCCR	1 cut(s)	384
AcsI	RAATTY	1 cut(s)	389
AfaI	GTAC	1 cut(s)	619
AfiI	CCNNNNNNNGG	2 cut(s)	172, 431
AgsI	TTSAA	3 cut(s)	21, 157, 484
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	1 cut(s)	288
AluI	AGCT	1 cut(s)	288
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	1 cut(s)	601
AoxI	GGCC	1 cut(s)	384
ApeKI	GCWGC	1 cut(s)	28
ApoI	RAATTY	1 cut(s)	389
Asp700I	GAANNNNTTC	1 cut(s)	16
AspLEI	GCGC	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	212
BbvI	GCAGC	1 cut(s)	15
BceAI	ACGGC	1 cut(s)	258
BciT130I	CCWGG	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	2 cut(s)	273, 320
BfmI	CTRYAG	1 cut(s)	87
BfuAI	ACCTGC	1 cut(s)	80
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
Bme1390I	CCNGG	1 cut(s)	228
BmiI	GGNNCC	1 cut(s)	556
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	3 cut(s)	27, 271, 430
BpuEI	CTTGAG	1 cut(s)	472
BsaXI	ACNNNNNCTCC	1 cut(s)	601
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 431
Bse118I	RCCGGY	1 cut(s)	66
Bse3DI	GCAATG	4 cut(s)	178, 185, 192, 330
BseBI	CCWGG	1 cut(s)	228
BseGI	GGATG	2 cut(s)	42, 227
BseLI	CCNNNNNNNGG	2 cut(s)	172, 431
BseMI	GCAATG	4 cut(s)	178, 185, 192, 330
BseMII	CTCAG	2 cut(s)	56, 411
BseXI	GCAGC	1 cut(s)	15
BshFI	GGCC	1 cut(s)	386
BsiSI	CCGG	1 cut(s)	67
BslI	CCNNNNNNNGG	2 cut(s)	172, 431
BsmAI	GTCTC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	386
Bsp143I	GATC	1 cut(s)	593
BspACI	CCGC	2 cut(s)	26, 55
BspANI	GGCC	1 cut(s)	386
BspCNI	CTCAG	2 cut(s)	55, 412
BspLI	GGNNCC	1 cut(s)	556
BspMAI	CTGCAG	1 cut(s)	91
BspMI	ACCTGC	1 cut(s)	80
BspPI	GGATC	1 cut(s)	601
BsrDI	GCAATG	4 cut(s)	178, 185, 192, 330
BsrFI	RCCGGY	1 cut(s)	66
BssAI	RCCGGY	1 cut(s)	66
BssMI	GATC	1 cut(s)	593
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	400
BstAPI	GCANNNNNTGC	1 cut(s)	37
BstC8I	GCNNGC	3 cut(s)	59, 68, 286
BstDEI	CTNAG	2 cut(s)	42, 420
BstF5I	GGATG	2 cut(s)	42, 227
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	1 cut(s)	596
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	1 cut(s)	593
BstMWI	GCNNNNNNNGC	6 cut(s)	37, 46, 63, 67, 269, 455
BstNI	CCWGG	1 cut(s)	228
BstSCI	CCNGG	1 cut(s)	226
BstSFI	CTRYAG	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	386
BtsCI	GGATG	2 cut(s)	42, 227
BveI	ACCTGC	1 cut(s)	80
Cac8I	GCNNGC	3 cut(s)	59, 68, 286
CfoI	GCGC	1 cut(s)	185
Cfr10I	RCCGGY	1 cut(s)	66
Csp6I	GTAC	1 cut(s)	618
CviAII	CATG	4 cut(s)	527, 551, 563, 573
CviJI	RGCY	6 cut(s)	70, 288, 356, 386, 424, 555
CviKI_1	RGCY	6 cut(s)	70, 288, 356, 386, 424, 555
CviQI	GTAC	1 cut(s)	618
DdeI	CTNAG	2 cut(s)	42, 420
DpnI	GATC	1 cut(s)	595
DpnII	GATC	1 cut(s)	593
EaeI	YGGCCR	1 cut(s)	384
EcoRII	CCWGG	1 cut(s)	226
FaeI	CATG	4 cut(s)	530, 554, 566, 576
FatI	CATG	4 cut(s)	526, 550, 562, 572
Fnu4HI	GCNGC	1 cut(s)	29
FokI	GGATG	2 cut(s)	49, 234
Fsp4HI	GCNGC	1 cut(s)	29
FspBI	CTAG	2 cut(s)	273, 320
FspI	TGCGCA	1 cut(s)	184
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	386
HapII	CCGG	1 cut(s)	67
HhaI	GCGC	1 cut(s)	185
Hin1II	CATG	4 cut(s)	530, 554, 566, 576
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HpaII	CCGG	1 cut(s)	67
HphI	GGTGA	1 cut(s)	212
Hpy188I	TCNGA	1 cut(s)	352
HpyAV	CCTTC	5 cut(s)	96, 132, 387, 497, 600
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4IV	ACGT	1 cut(s)	107
HpyCH4V	TGCA	4 cut(s)	31, 89, 178, 284
HpyF10VI	GCNNNNNNNGC	6 cut(s)	37, 46, 63, 67, 269, 455
HpyF3I	CTNAG	2 cut(s)	42, 420
HpySE526I	ACGT	1 cut(s)	107
Hsp92II	CATG	4 cut(s)	530, 554, 566, 576
HspAI	GCGC	1 cut(s)	183
KroI	GCCGGC	1 cut(s)	66
KroNI	GCCGGC	1 cut(s)	68
Kzo9I	GATC	1 cut(s)	593
LmnI	GCTCC	1 cut(s)	560
LpnPI	CCDG	9 cut(s)	75, 80, 99, 183, 213, 240, 418, 438, 585
Lsp1109I	GCAGC	1 cut(s)	15
LweI	GCATC	3 cut(s)	27, 271, 430
MaeI	CTAG	2 cut(s)	273, 320
MaeII	ACGT	1 cut(s)	107
MaeIII	GTNAC	1 cut(s)	108
MalI	GATC	1 cut(s)	595
MboI	GATC	1 cut(s)	593
MboII	GAAGA	1 cut(s)	292
MluCI	AATT	6 cut(s)	12, 116, 158, 267, 389, 505
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	5 cut(s)	51, 92, 325, 346, 603
MroNI	GCCGGC	1 cut(s)	66
MroXI	GAANNNNTTC	1 cut(s)	16
MseI	TTAA	3 cut(s)	393, 504, 513
MspA1I	CMGCKG	1 cut(s)	28
MspI	CCGG	1 cut(s)	67
MspR9I	CCNGG	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	6 cut(s)	37, 46, 63, 67, 269, 455
NaeI	GCCGGC	1 cut(s)	68
NdeII	GATC	1 cut(s)	593
NgoMIV	GCCGGC	1 cut(s)	66
NlaIII	CATG	4 cut(s)	530, 554, 566, 576
NlaIV	GGNNCC	1 cut(s)	556
NsbI	TGCGCA	1 cut(s)	184
PaqCI	CACCTGC	1 cut(s)	80
PdiI	GCCGGC	1 cut(s)	68
PdmI	GAANNNNTTC	1 cut(s)	16
PflMI	CCANNNNNTGG	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	1 cut(s)	556
PstI	CTGCAG	1 cut(s)	91
RsaI	GTAC	1 cut(s)	619
RsaNI	GTAC	1 cut(s)	618
SaqAI	TTAA	3 cut(s)	393, 504, 513
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	1 cut(s)	593
SbfI	CCTGCAGG	1 cut(s)	91
ScrFI	CCNGG	1 cut(s)	228
SdaI	CCTGCAGG	1 cut(s)	91
SetI	ASST	8 cut(s)	94, 110, 290, 379, 474, 489, 604, 614
SfaNI	GCATC	3 cut(s)	27, 271, 430
SfcI	CTRYAG	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	451
SmoI	CTYRAG	1 cut(s)	451
Sse8387I	CCTGCAGG	1 cut(s)	91
Sse9I	AATT	6 cut(s)	12, 116, 158, 267, 389, 505
SsiI	CCGC	2 cut(s)	26, 55
SspMI	CTAG	2 cut(s)	273, 320
StyD4I	CCNGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	400
TaiI	ACGT	1 cut(s)	110
TasI	AATT	6 cut(s)	12, 116, 158, 267, 389, 505
Tru1I	TTAA	3 cut(s)	393, 504, 513
Tru9I	TTAA	3 cut(s)	393, 504, 513
TseI	GCWGC	1 cut(s)	28
TspDTI	ATGAA	2 cut(s)	299, 327
Van91I	CCANNNNNTGG	1 cut(s)	172
XapI	RAATTY	1 cut(s)	389
XmnI	GAANNNNTTC	1 cut(s)	16
XspI	CTAG	2 cut(s)	273, 320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.