Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0019283

Physical Location & Seq

Genomic Coordinates Reverse (-)

12548851 .. 12550701

Gene Structure 1851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g10520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGACAGTTCCGCCGTATCAGGATGATGTTAAGAATAATGAGATGACGAATTACTTCAATTCCCCTGCATTGGATGTTTCAGTTGCTTTTCCGCAAGCAACGCCGATTTCTACTTTTCCTCCCTGCACTTCGGATTACTACCAGATTGATGATCTATTGACACCTGAGGAGCAGGCTATTAGGTTGAGAGTAAGAGAGTGTATGGAGAATGATGTGGCTCCAATTATGGCAGAGTATTGTGAGAAGGCAGAGTTTCCATTTCAAATTATTCCAAAGCTTGGTGCATTGCGCATTGCTGGTGGGACAATCAAGGGTTATGGGTGTCCTGGTCTTTCTATTACGGCAAATGCTTTTGCTACAGCTGAAATTGCTAGAGTTGATGCAAGCTGTTCTACTTTCTTCTTGGTTCATTCCTCAGCAGCAATGCTTACTATTGCATTATGTGGGTTGGAGGCTCAAAAGCAGAAATATCTACCTTCTTTGGCTGAATTTAAGATTGTCGCCTGCTTGGGTTTGACTGAGCCTGACTATGGAAGTGATGCGAGTGCCTTGAGAGCGACAGCAACAAAGGTCAAGGATTTCAACCTTCTCATTTGCTTCTTTATTTCTGTTAAATGGTATTATCATGCTCTTTTGGTTTTCGGGTGTCATGGCTCCGATCATGCTATATCATGTATTCTTGTGTTGTTGGGATCGTCAGGTGGAAGGAGGTTGGGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003997 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009514 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0022414 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046459 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

Acyl-CoA_dh_1 Acyl-CoA_dh_M Acyl-CoA_dh_N

Protein Analysis

241

Amino Acids

26.09

Weight (kDa)

5.21

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyl-CoA_dh_N	PF02771	54 - 163	1.5e-25	Acyl-CoA dehydrogenase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0019283)

Species	Orthologous Gene IDs
malus_domestica	MD12G1169800.v1.1 MD12G1170600.v1.1
pyrus_communis	pycom04g14040 pycom12g10520 pycom12g16040 pycom12g16090 pycom16g21080
rosa_multiflora	Rmu_sc0011275.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	290
AccB7I	CCANNNNNTGG	1 cut(s)	278
AciI	CCGC	2 cut(s)	11, 92
AclWI	GGATC	1 cut(s)	700
AcsI	RAATTY	1 cut(s)	488
AfaI	GTAC	1 cut(s)	718
AfiI	CCNNNNNNNGG	3 cut(s)	70, 278, 530
AgsI	TTSAA	3 cut(s)	58, 263, 583
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	3 cut(s)	277, 362, 387
AluI	AGCT	3 cut(s)	277, 362, 387
AlwI	GGATC	1 cut(s)	700
ApeKI	GCWGC	1 cut(s)	419
ApoI	RAATTY	1 cut(s)	488
Asp700I	GAANNNNTTC	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	291
AxyI	CCTNAGG	1 cut(s)	165
BbvCI	CCTCAGC	1 cut(s)	415
BbvI	GCAGC	1 cut(s)	431
BceAI	ACGGC	1 cut(s)	357
BciT130I	CCWGG	1 cut(s)	327
BfaI	CTAG	1 cut(s)	372
BfmI	CTRYAG	1 cut(s)	357
BisI	GCNGC	1 cut(s)	420
BlsI	GCNGC	1 cut(s)	421
Bme1390I	CCNGG	1 cut(s)	327
BmiI	GGNNCC	2 cut(s)	219, 655
BmrFI	CCNGG	1 cut(s)	327
BmsI	GCATC	2 cut(s)	370, 529
Bpu10I	CCTNAGC	1 cut(s)	415
BpuEI	CTTGAG	1 cut(s)	571
BsaXI	ACNNNNNCTCC	3 cut(s)	103, 133, 700
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 278, 530
Bse21I	CCTNAGG	1 cut(s)	165
Bse3DI	GCAATG	3 cut(s)	284, 291, 429
BseBI	CCWGG	1 cut(s)	327
BseGI	GGATG	2 cut(s)	28, 79
BseLI	CCNNNNNNNGG	3 cut(s)	70, 278, 530
BseMI	GCAATG	3 cut(s)	284, 291, 429
BseMII	CTCAG	3 cut(s)	156, 429, 510
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	431
BsgI	GTGCAG	1 cut(s)	109
BslFI	GGGAC	1 cut(s)	316
BslI	CCNNNNNNNGG	3 cut(s)	70, 278, 530
BsmFI	GGGAC	1 cut(s)	316
Bsp143I	GATC	3 cut(s)	151, 658, 692
BspACI	CCGC	2 cut(s)	11, 92
BspCNI	CTCAG	3 cut(s)	157, 428, 511
BspLI	GGNNCC	2 cut(s)	219, 655
BspPI	GGATC	1 cut(s)	700
BsrDI	GCAATG	3 cut(s)	284, 291, 429
BssMI	GATC	3 cut(s)	151, 658, 692
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	1 cut(s)	7
BstC8I	GCNNGC	4 cut(s)	96, 174, 385, 505
BstDEI	CTNAG	3 cut(s)	165, 415, 519
BstF5I	GGATG	2 cut(s)	28, 79
BstHHI	GCGC	1 cut(s)	291
BstKTI	GATC	3 cut(s)	154, 661, 695
BstMBI	GATC	3 cut(s)	151, 658, 692
BstMWI	GCNNNNNNNGC	3 cut(s)	100, 368, 554
BstNI	CCWGG	1 cut(s)	327
BstSCI	CCNGG	1 cut(s)	325
BstSFI	CTRYAG	1 cut(s)	357
BstV1I	GCAGC	1 cut(s)	431
Bsu36I	CCTNAGG	1 cut(s)	165
BtsCI	GGATG	2 cut(s)	28, 79
Cac8I	GCNNGC	4 cut(s)	96, 174, 385, 505
CfoI	GCGC	1 cut(s)	291
Csp6I	GTAC	1 cut(s)	717
CviAII	CATG	4 cut(s)	626, 650, 662, 672
CviJI	RGCY	9 cut(s)	176, 218, 277, 362, 387, 455, 485, 523, 654
CviKI_1	RGCY	9 cut(s)	176, 218, 277, 362, 387, 455, 485, 523, 654
CviQI	GTAC	1 cut(s)	717
DdeI	CTNAG	3 cut(s)	165, 415, 519
DpnI	GATC	3 cut(s)	153, 660, 694
DpnII	GATC	3 cut(s)	151, 658, 692
Eco81I	CCTNAGG	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	325
FaeI	CATG	4 cut(s)	629, 653, 665, 675
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	4 cut(s)	625, 649, 661, 671
Fnu4HI	GCNGC	1 cut(s)	420
FokI	GGATG	2 cut(s)	35, 86
Fsp4HI	GCNGC	1 cut(s)	420
FspBI	CTAG	1 cut(s)	372
FspI	TGCGCA	1 cut(s)	290
GlaI	GCGC	1 cut(s)	290
GluI	GCNGC	1 cut(s)	420
HhaI	GCGC	1 cut(s)	291
Hin1II	CATG	4 cut(s)	629, 653, 665, 675
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HindIII	AAGCTT	1 cut(s)	275
Hpy188I	TCNGA	2 cut(s)	133, 658
Hpy188III	TCNNGA	1 cut(s)	20
HpyAV	CCTTC	4 cut(s)	238, 486, 596, 699
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4V	TGCA	5 cut(s)	68, 126, 284, 383, 437
HpyF10VI	GCNNNNNNNGC	3 cut(s)	100, 368, 554
HpyF3I	CTNAG	3 cut(s)	165, 415, 519
Hsp92II	CATG	4 cut(s)	629, 653, 665, 675
HspAI	GCGC	1 cut(s)	289
Kzo9I	GATC	3 cut(s)	151, 658, 692
LmnI	GCTCC	3 cut(s)	169, 223, 659
Lsp1109I	GCAGC	1 cut(s)	431
LweI	GCATC	2 cut(s)	370, 529
MaeI	CTAG	1 cut(s)	372
MalI	GATC	3 cut(s)	153, 660, 694
MboI	GATC	3 cut(s)	151, 658, 692
MboII	GAAGA	1 cut(s)	391
MluCI	AATT	6 cut(s)	49, 58, 222, 264, 366, 488
MmeI	TCCRAC	1 cut(s)	429
MnlI	CCTC	5 cut(s)	129, 160, 424, 445, 702
MroXI	GAANNNNTTC	1 cut(s)	53
MseI	TTAA	3 cut(s)	30, 492, 612
MspA1I	CMGCKG	1 cut(s)	362
MspR9I	CCNGG	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	3 cut(s)	100, 368, 554
NdeII	GATC	3 cut(s)	151, 658, 692
NlaIII	CATG	4 cut(s)	629, 653, 665, 675
NlaIV	GGNNCC	2 cut(s)	219, 655
NsbI	TGCGCA	1 cut(s)	290
PdmI	GAANNNNTTC	1 cut(s)	53
PflMI	CCANNNNNTGG	1 cut(s)	278
PkrI	GCNGC	1 cut(s)	421
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	2 cut(s)	219, 655
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	1 cut(s)	718
RsaNI	GTAC	1 cut(s)	717
SaqAI	TTAA	3 cut(s)	30, 492, 612
SatI	GCNGC	1 cut(s)	420
Sau3AI	GATC	3 cut(s)	151, 658, 692
ScrFI	CCNGG	1 cut(s)	327
SfaNI	GCATC	2 cut(s)	370, 529
SfcI	CTRYAG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	550
SmoI	CTYRAG	1 cut(s)	550
Sse9I	AATT	6 cut(s)	49, 58, 222, 264, 366, 488
SsiI	CCGC	2 cut(s)	11, 92
SspMI	CTAG	1 cut(s)	372
StyD4I	CCNGG	1 cut(s)	325
TaaI	ACNGT	1 cut(s)	7
TasI	AATT	6 cut(s)	49, 58, 222, 264, 366, 488
Tru1I	TTAA	3 cut(s)	30, 492, 612
Tru9I	TTAA	3 cut(s)	30, 492, 612
TseI	GCWGC	1 cut(s)	419
TspDTI	ATGAA	1 cut(s)	398
Van91I	CCANNNNNTGG	1 cut(s)	278
XapI	RAATTY	1 cut(s)	488
XmnI	GAANNNNTTC	1 cut(s)	53
XspI	CTAG	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.