Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011275.1

Orthogroup ID

OG0019283

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1502

Gene Structure 1502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011275.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 433 bp

atgacaatacctccaaatcaagatgatgctaacaaagcgaggactacttatttcaatttacctgcgttggatgtctcccttgctttcccccaagcaactccggcggctatatttcctccctgcacttccgactattatcaatttaatgacctattgacgcctgaggagcaggctctcaggatgagagtaagacagtctgtagagaaagaagtagctccaatcatggcggagtattgggagaaggcagcgtttccattccatattattcccaagcttggtgccttgcaaattgctgggggcacaatcaagggttatgggtgtcccggtctttctattacagcaagtgctattgctacagcagaagttgctagagttgatgctagctgttctactttcatcctagttcattcatcactagcaatgctcactattg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003997 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009514 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0022414 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046459 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

Acyl-CoA_dh_1 Acyl-CoA_dh_M Acyl-CoA_dh_N

Protein Analysis

144

Amino Acids

15.59

Weight (kDa)

5.25

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019283)

Species	Orthologous Gene IDs
malus_domestica	MD12G1169800.v1.1 MD12G1170600.v1.1
pyrus_communis	pycom04g14040 pycom12g10520 pycom12g16040 pycom12g16090 pycom16g21080
rosa_multiflora	Rmu_sc0011275.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	70
AccB1I	GGYRCC	1 cut(s)	278
AciI	CCGC	2 cut(s)	104, 227
AcyI	GRCGYC	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	275
AgsI	TTSAA	1 cut(s)	55
AluBI	AGCT	3 cut(s)	215, 274, 384
AluI	AGCT	3 cut(s)	215, 274, 384
Alw26I	GTCTC	1 cut(s)	79
ApeKI	GCWGC	1 cut(s)	245
AsuC2I	CCSGG	1 cut(s)	324
AsuNHI	GCTAGC	1 cut(s)	380
AxyI	CCTNAGG	1 cut(s)	162
BaeGI	GKGCMC	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	278
BbvI	GCAGC	1 cut(s)	257
BcnI	CCSGG	1 cut(s)	324
BcoDI	GTCTC	1 cut(s)	79
BfaI	CTAG	4 cut(s)	369, 381, 401, 416
BfmI	CTRYAG	2 cut(s)	198, 354
BfuAI	ACCTGC	1 cut(s)	70
BisI	GCNGC	2 cut(s)	105, 246
BlsI	GCNGC	2 cut(s)	106, 247
Bme1390I	CCNGG	1 cut(s)	324
BmiI	GGNNCC	1 cut(s)	280
BmrFI	CCNGG	1 cut(s)	324
BmsI	GCATC	2 cut(s)	16, 367
BmtI	GCTAGC	1 cut(s)	384
BpuMI	CCSGG	1 cut(s)	324
BsaHI	GRCGYC	1 cut(s)	158
BsaXI	ACNNNNNCTCC	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse21I	CCTNAGG	1 cut(s)	162
Bse3DI	GCAATG	1 cut(s)	426
BseGI	GGATG	3 cut(s)	76, 186, 396
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	2 cut(s)	153, 190
BseRI	GAGGAG	1 cut(s)	179
BseSI	GKGCMC	1 cut(s)	302
BseXI	GCAGC	1 cut(s)	257
BseYI	CCCAGC	1 cut(s)	293
BsgI	GTGCAG	1 cut(s)	106
BshNI	GGYRCC	1 cut(s)	278
BsiSI	CCGG	2 cut(s)	101, 324
BslFI	GGGAC	1 cut(s)	306
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmAI	GTCTC	1 cut(s)	79
BsmFI	GGGAC	1 cut(s)	306
Bsp1286I	GDGCHC	1 cut(s)	302
BspACI	CCGC	2 cut(s)	104, 227
BspCNI	CTCAG	2 cut(s)	154, 189
BspLI	GGNNCC	1 cut(s)	280
BspMI	ACCTGC	1 cut(s)	70
BspOI	GCTAGC	1 cut(s)	384
BspT107I	GGYRCC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	426
BssNI	GRCGYC	1 cut(s)	158
Bst4CI	ACNGT	1 cut(s)	195
BstACI	GRCGYC	1 cut(s)	158
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstC8I	GCNNGC	2 cut(s)	171, 382
BstDEI	CTNAG	2 cut(s)	162, 176
BstF5I	GGATG	3 cut(s)	76, 186, 396
BstMAI	GTCTC	1 cut(s)	79
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 101, 166, 365
BstSCI	CCNGG	1 cut(s)	322
BstSFI	CTRYAG	2 cut(s)	198, 354
BstSLI	GKGCMC	1 cut(s)	302
BstV1I	GCAGC	1 cut(s)	257
Bsu36I	CCTNAGG	1 cut(s)	162
BtsCI	GGATG	3 cut(s)	76, 186, 396
BveI	ACCTGC	1 cut(s)	70
Cac8I	GCNNGC	2 cut(s)	171, 382
CseI	GACGC	1 cut(s)	166
CviAII	CATG	1 cut(s)	223
CviJI	RGCY	5 cut(s)	107, 173, 215, 274, 384
CviKI_1	RGCY	5 cut(s)	107, 173, 215, 274, 384
DdeI	CTNAG	2 cut(s)	162, 176
EciI	GGCGGA	1 cut(s)	242
Eco81I	CCTNAGG	1 cut(s)	162
FaeI	CATG	1 cut(s)	226
FaiI	YATR	4 cut(s)	110, 224, 261, 315
FaqI	GGGAC	1 cut(s)	306
FatI	CATG	1 cut(s)	222
Fnu4HI	GCNGC	2 cut(s)	105, 246
FokI	GGATG	3 cut(s)	83, 193, 383
Fsp4HI	GCNGC	2 cut(s)	105, 246
FspBI	CTAG	4 cut(s)	369, 381, 401, 416
GluI	GCNGC	2 cut(s)	105, 246
GsaI	CCCAGC	1 cut(s)	297
HapII	CCGG	2 cut(s)	101, 324
HgaI	GACGC	1 cut(s)	166
Hin1I	GRCGYC	1 cut(s)	158
Hin1II	CATG	1 cut(s)	226
HindIII	AAGCTT	1 cut(s)	272
HpaII	CCGG	2 cut(s)	101, 324
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	2 cut(s)	20, 178
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	1 cut(s)	195
HpyCH4V	TGCA	2 cut(s)	123, 286
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 101, 166, 365
HpyF3I	CTNAG	2 cut(s)	162, 176
Hsp92I	GRCGYC	1 cut(s)	158
Hsp92II	CATG	1 cut(s)	226
LmnI	GCTCC	2 cut(s)	166, 220
LpnPI	CCDG	8 cut(s)	75, 114, 133, 155, 163, 174, 279, 337
Lsp1109I	GCAGC	1 cut(s)	257
LweI	GCATC	2 cut(s)	16, 367
MaeI	CTAG	4 cut(s)	369, 381, 401, 416
MhlI	GDGCHC	1 cut(s)	302
MluCI	AATT	3 cut(s)	55, 140, 288
MmeI	TCCRAC	2 cut(s)	48, 153
MnlI	CCTC	4 cut(s)	21, 33, 126, 157
MseI	TTAA	1 cut(s)	144
MspI	CCGG	2 cut(s)	101, 324
MspR9I	CCNGG	1 cut(s)	324
MwoI	GCNNNNNNNGC	4 cut(s)	35, 101, 166, 365
NciI	CCSGG	1 cut(s)	324
NheI	GCTAGC	1 cut(s)	380
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	1 cut(s)	280
PkrI	GCNGC	2 cut(s)	106, 247
PspFI	CCCAGC	1 cut(s)	293
PspN4I	GGNNCC	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	2 cut(s)	105, 246
ScrFI	CCNGG	1 cut(s)	324
SduI	GDGCHC	1 cut(s)	302
SetI	ASST	6 cut(s)	13, 64, 153, 217, 276, 386
SfaNI	GCATC	2 cut(s)	16, 367
SfcI	CTRYAG	2 cut(s)	198, 354
Sse9I	AATT	3 cut(s)	55, 140, 288
SsiI	CCGC	2 cut(s)	104, 227
SspMI	CTAG	4 cut(s)	369, 381, 401, 416
StyD4I	CCNGG	1 cut(s)	322
TaaI	ACNGT	1 cut(s)	195
TasI	AATT	3 cut(s)	55, 140, 288
TauI	GCSGC	1 cut(s)	107
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TseI	GCWGC	1 cut(s)	245
TspDTI	ATGAA	3 cut(s)	385, 395, 399
XspI	CTAG	4 cut(s)	369, 381, 401, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.