Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0019283

Physical Location & Seq

Genomic Coordinates Forward (+)

16943541 .. 16945326

Gene Structure 1786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGACAGTTCCTCCGAATCAAGATGATGTTAAGAAGAATGAAAGGACGAATTACTTCAATTCCCCTGCATTGGATGTCTCACTTGCTTTTCCACAAGCAACGCCGGCATCCACCTTTCCTCCCTGCGCCTCGGATTATTACCGGTTTGATGATCTATTGACTCCTGAGGAGCAGGCTATGAGATTGAGAGTAAGAAAGTGTATGGAGAAAGACGTCGCTCCAATTATGGCAGAGTACTGGGAGAAGGCACAGTTTCCATTTCAAATTATTCCAAAGCTTGCTGCATTGCGCATTGCTGGTGGCACAATCAAGGGTTATGGGTGTCCTGGTCTTTCTATTACGGCAAGTGCTTTTGCTACAGCTGAACTTGCTAGAGTTGATGCAAGCTGTTCTACTTTCGTCTTGGTTCATTCCTCACTAGCAATGCTTACTATTGCATTATGTGGTTCGGAAGCTCAAAAGCAGAAATATCTACCTTCTTTGGCTGAATTTAAGACTGTAGCCTGCTGGGGTTTGACCGAACCTGACTACGGAAGTGATGCGAGTGCCTTGAGAACGACAGCAACAAAGGTCAAGGATTTCAACCTTCCCATTTGCTTCTTTATTTCTGTTATTGGCCTAGTGTGGGCAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003997 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009514 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0022414 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046459 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

Acyl-CoA_dh_1 Acyl-CoA_dh_M Acyl-CoA_dh_N

Protein Analysis

212

Amino Acids

23.05

Weight (kDa)

5.88

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyl-CoA_dh_N	PF02771	54 - 163	5.2e-28	Acyl-CoA dehydrogenase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0019283)

Species	Orthologous Gene IDs
malus_domestica	MD12G1169800.v1.1 MD12G1170600.v1.1
pyrus_communis	pycom04g14040 pycom12g10520 pycom12g16040 pycom12g16090 pycom16g21080
rosa_multiflora	Rmu_sc0011275.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	216
Acc16I	TGCGCA	1 cut(s)	290
AcsI	RAATTY	1 cut(s)	488
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	3 cut(s)	70, 530, 625
AgeI	ACCGGT	1 cut(s)	141
AgsI	TTSAA	3 cut(s)	58, 263, 583
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	4 cut(s)	277, 362, 387, 455
AluI	AGCT	4 cut(s)	277, 362, 387, 455
Alw26I	GTCTC	1 cut(s)	82
AoxI	GGCC	1 cut(s)	616
ApeKI	GCWGC	1 cut(s)	281
ApoI	RAATTY	1 cut(s)	488
AsiGI	ACCGGT	1 cut(s)	141
Asp700I	GAANNNNTTC	1 cut(s)	53
AspLEI	GCGC	2 cut(s)	128, 291
AxyI	CCTNAGG	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	268
BceAI	ACGGC	1 cut(s)	357
BciT130I	CCWGG	1 cut(s)	327
BcoDI	GTCTC	1 cut(s)	82
BfaI	CTAG	3 cut(s)	372, 419, 620
BfmI	CTRYAG	2 cut(s)	357, 498
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
BmcAI	AGTACT	1 cut(s)	236
Bme1390I	CCNGG	1 cut(s)	327
BmrFI	CCNGG	1 cut(s)	327
BmrI	ACTGGG	1 cut(s)	247
BmsI	GCATC	3 cut(s)	116, 370, 529
BmuI	ACTGGG	1 cut(s)	247
BpuEI	CTTGAG	1 cut(s)	571
BsaHI	GRCGYC	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	129
BsaWI	WCCGGW	1 cut(s)	141
BsaXI	ACNNNNNCTCC	3 cut(s)	25, 103, 133
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 530, 625
Bse118I	RCCGGY	2 cut(s)	103, 141
Bse1I	ACTGG	1 cut(s)	242
Bse21I	CCTNAGG	1 cut(s)	165
Bse3DI	GCAATG	3 cut(s)	284, 291, 429
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	2 cut(s)	79, 107
BseLI	CCNNNNNNNGG	3 cut(s)	70, 530, 625
BseMI	GCAATG	3 cut(s)	284, 291, 429
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	1 cut(s)	242
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	268
BseYI	CCCAGC	1 cut(s)	507
BshFI	GGCC	1 cut(s)	618
BshTI	ACCGGT	1 cut(s)	141
BsiSI	CCGG	2 cut(s)	104, 142
BslI	CCNNNNNNNGG	3 cut(s)	70, 530, 625
BsmAI	GTCTC	1 cut(s)	82
BsnI	GGCC	1 cut(s)	618
Bsp143I	GATC	1 cut(s)	151
BspANI	GGCC	1 cut(s)	618
BspCNI	CTCAG	1 cut(s)	157
BsrDI	GCAATG	3 cut(s)	284, 291, 429
BsrFI	RCCGGY	2 cut(s)	103, 141
BsrI	ACTGG	1 cut(s)	242
BssAI	RCCGGY	2 cut(s)	103, 141
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	1 cut(s)	151
BssNI	GRCGYC	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	3 cut(s)	7, 252, 499
BstACI	GRCGYC	1 cut(s)	213
BstC8I	GCNNGC	5 cut(s)	105, 174, 279, 385, 505
BstDEI	CTNAG	1 cut(s)	165
BstF5I	GGATG	2 cut(s)	79, 107
BstHHI	GCGC	2 cut(s)	128, 291
BstKTI	GATC	1 cut(s)	154
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	151
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 368
BstNI	CCWGG	1 cut(s)	327
BstSCI	CCNGG	1 cut(s)	325
BstSFI	CTRYAG	2 cut(s)	357, 498
BstV1I	GCAGC	1 cut(s)	268
Bsu36I	CCTNAGG	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	618
BtsCI	GGATG	2 cut(s)	79, 107
Cac8I	GCNNGC	5 cut(s)	105, 174, 279, 385, 505
CfoI	GCGC	2 cut(s)	128, 291
Cfr10I	RCCGGY	2 cut(s)	103, 141
Csp6I	GTAC	1 cut(s)	235
CspAI	ACCGGT	1 cut(s)	141
CviJI	RGCY	8 cut(s)	176, 277, 362, 387, 455, 485, 503, 618
CviKI_1	RGCY	8 cut(s)	176, 277, 362, 387, 455, 485, 503, 618
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
Eco81I	CCTNAGG	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	325
FaiI	YATR	5 cut(s)	179, 203, 227, 318, 442
Fnu4HI	GCNGC	1 cut(s)	282
FokI	GGATG	2 cut(s)	86, 94
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	3 cut(s)	372, 419, 620
FspI	TGCGCA	1 cut(s)	290
GlaI	GCGC	2 cut(s)	127, 290
GluI	GCNGC	1 cut(s)	282
GsaI	CCCAGC	1 cut(s)	511
HaeIII	GGCC	1 cut(s)	618
HapII	CCGG	2 cut(s)	104, 142
HhaI	GCGC	2 cut(s)	128, 291
Hin1I	GRCGYC	1 cut(s)	213
Hin6I	GCGC	2 cut(s)	126, 289
HinP1I	GCGC	2 cut(s)	126, 289
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	2 cut(s)	16, 160
HpaII	CCGG	2 cut(s)	104, 142
Hpy188I	TCNGA	3 cut(s)	15, 133, 451
Hpy188III	TCNNGA	2 cut(s)	20, 164
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	3 cut(s)	238, 486, 596
HpyCH4III	ACNGT	3 cut(s)	7, 252, 499
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	4 cut(s)	68, 284, 383, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 368
HpyF3I	CTNAG	1 cut(s)	165
HpySE526I	ACGT	1 cut(s)	213
Hsp92I	GRCGYC	1 cut(s)	213
HspAI	GCGC	2 cut(s)	126, 289
KroI	GCCGGC	1 cut(s)	103
KroNI	GCCGGC	1 cut(s)	105
Kzo9I	GATC	1 cut(s)	151
LmnI	GCTCC	2 cut(s)	169, 223
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	3 cut(s)	116, 370, 529
MaeI	CTAG	3 cut(s)	372, 419, 620
MaeII	ACGT	1 cut(s)	213
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	1 cut(s)	46
MluCI	AATT	5 cut(s)	49, 58, 222, 264, 488
MlyI	GAGTC	1 cut(s)	154
MnlI	CCTC	5 cut(s)	21, 129, 139, 160, 424
MroNI	GCCGGC	1 cut(s)	103
MroXI	GAANNNNTTC	1 cut(s)	53
MseI	TTAA	2 cut(s)	30, 492
MspA1I	CMGCKG	1 cut(s)	362
MspI	CCGG	2 cut(s)	104, 142
MspR9I	CCNGG	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	2 cut(s)	104, 368
NaeI	GCCGGC	1 cut(s)	105
NdeII	GATC	1 cut(s)	151
NgoMIV	GCCGGC	1 cut(s)	103
NsbI	TGCGCA	1 cut(s)	290
PdiI	GCCGGC	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	16
PinAI	ACCGGT	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	283
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	325
PspFI	CCCAGC	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	325
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SaqAI	TTAA	2 cut(s)	30, 492
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	1 cut(s)	151
ScaI	AGTACT	1 cut(s)	236
SchI	GAGTC	1 cut(s)	154
ScrFI	CCNGG	1 cut(s)	327
SfaNI	GCATC	3 cut(s)	116, 370, 529
SfcI	CTRYAG	2 cut(s)	357, 498
SmlI	CTYRAG	1 cut(s)	550
SmoI	CTYRAG	1 cut(s)	550
Sse9I	AATT	5 cut(s)	49, 58, 222, 264, 488
SspMI	CTAG	3 cut(s)	372, 419, 620
StyD4I	CCNGG	1 cut(s)	325
TaaI	ACNGT	3 cut(s)	7, 252, 499
TaiI	ACGT	1 cut(s)	216
TaqII	GACCGA	1 cut(s)	533
TasI	AATT	5 cut(s)	49, 58, 222, 264, 488
TatI	WGTACW	1 cut(s)	234
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	2 cut(s)	30, 492
Tru9I	TTAA	2 cut(s)	30, 492
TseI	GCWGC	1 cut(s)	281
TspDTI	ATGAA	2 cut(s)	54, 398
TspGWI	ACGGA	1 cut(s)	546
XapI	RAATTY	1 cut(s)	488
XmnI	GAANNNNTTC	1 cut(s)	53
XspI	CTAG	3 cut(s)	372, 419, 620
ZraI	GACGTC	1 cut(s)	214
ZrmI	AGTACT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.