Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0011386

Physical Location & Seq

Genomic Coordinates Reverse (-)

22844633 .. 22844941

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g21860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGAAAGTATTTCTTCTTCTTTTGGGTTTCTACACGGCAAATGCATTGGCTACAATCCTTGGGCAGACTGGGGATTGGGATGTTCTGGTTGCGGGTGTAGTGGTTGCCACCATTGAAGGTATTGGTATGCTTATGTATAGAAAGCCCCCCTCTCAATCAAGTGGGAGGCTCAAGTCTTTTGTCATGATGGTAAATTACTGGAAAGCCGGTGTGTGCTTAGGTCTCTTTGTGGATGCTTTTAAATTGGGTATGGTTCTACCGACCTCAAGTCTGGAAGATGGAGATTTAGTACTAAACTCGTGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0010196 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:1990066

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF565

Protein Analysis

103

Amino Acids

11.01

Weight (kDa)

6.04

Isoelectric Point (pI)

32.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF565	PF04483	22 - 83	6.9e-22	Protein of unknown function (DUF565)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65420
fragaria_vesca	FvH4_6g00150 FvH4_6g00150 FvH4_6g00150
malus_domestica	MD04G1247900.v1.1 MD12G1262600.v1.1
prunus_persica	Prupe.6G364400_v2.0.a1 Prupe.6G364400_v2.0.a1 Prupe.6G364400_v2.0.a1
pyrus_communis	pycom04g21860
rosa_chinensis	RchiOBHm_Chr3g0447501
rosa_laevigata	RLG00000025992
rosa_multiflora	Rmu_sc0006572.1_g000003
rosa_roxburghii	Rroxscaffold_6G00425720
rosa_rugosa	Rorug02G0602400
rosa_samantha	Rh3AG002600 Rh3BG002100 Rh3CG002400 Rh3DG002500
rosa_wichuraiana	Rw3G000150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	92
AfaI	GTAC	1 cut(s)	291
AgsI	TTSAA	1 cut(s)	116
AhdI	GACNNNNNGTC	1 cut(s)	267
Alw26I	GTCTC	1 cut(s)	227
BarI	GAAGNNNNNNTAC	1 cut(s)	32
BauI	CACGAG	1 cut(s)	298
BccI	CCATC	2 cut(s)	181, 272
BceAI	ACGGC	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	227
BmcAI	AGTACT	1 cut(s)	291
BmeRI	GACNNNNNGTC	1 cut(s)	267
BmrI	ACTGGG	1 cut(s)	78
BmsI	GCATC	1 cut(s)	223
BmuI	ACTGGG	1 cut(s)	78
Bpu10I	CCTNAGC	1 cut(s)	217
BpuEI	CTTGAG	2 cut(s)	155, 250
BsaI	GGTCTC	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	58
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	2 cut(s)	73, 203
BseDI	CCNNGG	1 cut(s)	58
BseGI	GGATG	2 cut(s)	85, 238
BseNI	ACTGG	2 cut(s)	73, 203
BsiSI	CCGG	1 cut(s)	207
BsmAI	GTCTC	1 cut(s)	227
Bso31I	GGTCTC	1 cut(s)	227
BspACI	CCGC	1 cut(s)	92
BspHI	TCATGA	1 cut(s)	183
BspTNI	GGTCTC	1 cut(s)	227
BsrFI	RCCGGY	1 cut(s)	206
BsrI	ACTGG	2 cut(s)	73, 203
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	58
BssSI	CACGAG	1 cut(s)	298
BssT1I	CCWWGG	1 cut(s)	58
Bst2BI	CACGAG	1 cut(s)	298
BstDEI	CTNAG	1 cut(s)	217
BstF5I	GGATG	2 cut(s)	85, 238
BstMAI	GTCTC	1 cut(s)	227
BtsCI	GGATG	2 cut(s)	85, 238
CciI	TCATGA	1 cut(s)	183
Cfr10I	RCCGGY	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	290
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	4 cut(s)	50, 145, 169, 206
CviKI_1	RGCY	4 cut(s)	50, 145, 169, 206
CviQI	GTAC	1 cut(s)	290
DdeI	CTNAG	1 cut(s)	217
DraI	TTTAAA	1 cut(s)	241
DriI	GACNNNNNGTC	1 cut(s)	267
Eam1105I	GACNNNNNGTC	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	58
Eco31I	GGTCTC	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	58
EcoT22I	ATGCAT	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	58
FaeI	CATG	1 cut(s)	187
FaiI	YATR	5 cut(s)	128, 134, 138, 185, 251
FalI	AAGNNNNNCTT	1 cut(s)	29
FatI	CATG	1 cut(s)	183
FauI	CCCGC	1 cut(s)	85
FokI	GGATG	2 cut(s)	92, 245
HapII	CCGG	1 cut(s)	207
Hin1II	CATG	1 cut(s)	187
HpaII	CCGG	1 cut(s)	207
Hpy188III	TCNNGA	2 cut(s)	184, 272
HpyAV	CCTTC	1 cut(s)	110
HpyCH4V	TGCA	1 cut(s)	44
HpyF3I	CTNAG	1 cut(s)	217
Hsp92II	CATG	1 cut(s)	187
LpnPI	CCDG	5 cut(s)	54, 71, 184, 220, 257
LweI	GCATC	1 cut(s)	223
MboII	GAAGA	3 cut(s)	5, 8, 287
MluCI	AATT	2 cut(s)	193, 242
MnlI	CCTC	3 cut(s)	159, 160, 274
Mph1103I	ATGCAT	1 cut(s)	46
MseI	TTAA	2 cut(s)	240, 307
MspI	CCGG	1 cut(s)	207
NlaIII	CATG	1 cut(s)	187
NsiI	ATGCAT	1 cut(s)	46
PagI	TCATGA	1 cut(s)	183
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
SaqAI	TTAA	2 cut(s)	240, 307
ScaI	AGTACT	1 cut(s)	291
SetI	ASST	3 cut(s)	121, 223, 266
SfaNI	GCATC	1 cut(s)	223
SmlI	CTYRAG	2 cut(s)	170, 265
SmoI	CTYRAG	2 cut(s)	170, 265
Sse9I	AATT	2 cut(s)	193, 242
SsiI	CCGC	1 cut(s)	92
StyI	CCWWGG	1 cut(s)	58
TasI	AATT	2 cut(s)	193, 242
TatI	WGTACW	1 cut(s)	289
Tru1I	TTAA	2 cut(s)	240, 307
Tru9I	TTAA	2 cut(s)	240, 307
TspDTI	ATGAA	1 cut(s)	17
ZrmI	AGTACT	1 cut(s)	291
Zsp2I	ATGCAT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.