pycom05g03470
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0019560
Physical Location & Seq
Reverse (-)
3955951 .. 3956966
1016 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 639 bp
ATGGTAGCTAGCATTAAAGTGCTATTGTGCATGCCACAATTTGGTGCAAGTGCATATGGATGCATTCTGATAACTGTGTATGTATTTTATGGTACAGCGAGATGCAAGCTGGGCTACAGTGAAAAGAACGAGTGGTACTTCTTCAGTCACAAAGACAAGAAGTACCCGACTGGAACTCGAACAAATAGAGCCACATCTGCTGGATTCTGGAAGGCAACAGGAAGAGACAAGGCAGTGCTTTCAAAGAACAACATTATAGGAATGAGGAAGACCCTGGTGTTCTACAAGGGACGAGCACCTAACGGCAACAAAACCGACTGGATCATGCATGAATATCGACTCCAAACTTCGGAACATGCACCCCCTCAGGAAGAAGGATGGGTTGTATGTCGGGCATTCAAGAAGCCAAGTCCTAGTCACAGGCAAGGTTTTGAAGCATGGAAGCATGCTTACTATGTCAGAGATCATGCTTCATCTTCAAGCTTCTCAAGTGAAATGCCTATGTCTATGCTGATCAACCCCAATCAAGGTTTCCATCAACCTTTTCGTTCAGATCAGCAAAATTGGACCCGTCGATCGATCATTTCGTTTCGAACAACATTTTCTTGGGTAACCAGCTCATGGAACTTCCTCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009741 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010383 GO:0010410 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044036 GO:0044087 GO:0044089 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045491 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071704 GO:0080090 GO:0090059 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901348 GO:1901363 GO:1901700 GO:1902680 GO:1903338 GO:1903340 GO:1903506 GO:1903508 GO:1905177 GO:2000112 GO:2000652 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

213

Amino Acids

24.56

Weight (kDa)

9.92

Isoelectric Point (pI)

46.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 40 - 114 3.2e-27 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019560)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71930 AT1G71930
malus_domestica MD05G1042100.v1.1 MD10G1048500.v1.1 MD10G1048600.v1.1
prunus_persica Prupe.8G058100_v2.0.a1
pyrus_communis pycom05g03470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 41, 621
AclWI GGATC 1 cut(s) 329
AcuI CTGAAG 1 cut(s) 127
AfaI GTAC 3 cut(s) 94, 137, 164
AfiI CCNNNNNNNGG 4 cut(s) 41, 349, 527, 621
AgsI TTSAA 4 cut(s) 243, 400, 434, 480
AjnI CCWGG 1 cut(s) 273
AjuI GAANNNNNNNTTGG 2 cut(s) 515, 547
AluBI AGCT 4 cut(s) 8, 109, 483, 618
AluI AGCT 4 cut(s) 8, 109, 483, 618
Alw21I GWGCWC 1 cut(s) 298
Alw26I GTCTC 1 cut(s) 219
AlwI GGATC 1 cut(s) 329
AspS9I GGNCC 1 cut(s) 567
AsuII TTCGAA 1 cut(s) 592
AsuNHI GCTAGC 1 cut(s) 8
AvaII GGWCC 1 cut(s) 567
AxyI CCTNAGG 1 cut(s) 366
BarI GAAGNNNNNNTAC 2 cut(s) 434, 466
BbsI GAAGAC 1 cut(s) 275
Bbv12I GWGCWC 1 cut(s) 298
BccI CCATC 2 cut(s) 372, 543
BceAI ACGGC 1 cut(s) 319
BcgI CGANNNNNNTGC 2 cut(s) 317, 351
BciT130I CCWGG 1 cut(s) 275
BclI TGATCA 1 cut(s) 513
BcoDI GTCTC 1 cut(s) 219
BfaI CTAG 3 cut(s) 9, 414, 637
BfmI CTRYAG 1 cut(s) 115
Bme1390I CCNGG 1 cut(s) 275
Bme18I GGWCC 1 cut(s) 567
BmgT120I GGNCC 1 cut(s) 567
BmiI GGNNCC 1 cut(s) 569
BmrFI CCNGG 1 cut(s) 275
BmsI GCATC 2 cut(s) 50, 92
BmtI GCTAGC 1 cut(s) 12
BpiI GAAGAC 1 cut(s) 275
Bpu14I TTCGAA 1 cut(s) 592
BpuEI CTTGAG 1 cut(s) 472
Bsa29I ATCGAT 1 cut(s) 578
BsaJI CCNNGG 1 cut(s) 273
Bsc4I CCNNNNNNNGG 4 cut(s) 41, 349, 527, 621
Bse1I ACTGG 2 cut(s) 175, 323
Bse21I CCTNAGG 1 cut(s) 366
BseBI CCWGG 1 cut(s) 275
BseCI ATCGAT 1 cut(s) 578
BseDI CCNNGG 1 cut(s) 273
BseGI GGATG 2 cut(s) 65, 383
BseLI CCNNNNNNNGG 4 cut(s) 41, 349, 527, 621
BseMII CTCAG 1 cut(s) 380
BseNI ACTGG 2 cut(s) 175, 323
BseYI CCCAGC 1 cut(s) 109
Bsh1285I CGRYCG 1 cut(s) 578
BshVI ATCGAT 1 cut(s) 578
BsiEI CGRYCG 1 cut(s) 578
BsiHKAI GWGCWC 1 cut(s) 298
BslFI GGGAC 1 cut(s) 303
BslI CCNNNNNNNGG 4 cut(s) 41, 349, 527, 621
BsmAI GTCTC 1 cut(s) 219
BsmFI GGGAC 1 cut(s) 303
BsmI GAATGC 2 cut(s) 63, 395
Bsp119I TTCGAA 1 cut(s) 592
Bsp1286I GDGCHC 1 cut(s) 298
Bsp143I GATC 6 cut(s) 321, 463, 513, 553, 575, 579
BspCNI CTCAG 1 cut(s) 379
BspDI ATCGAT 1 cut(s) 578
BspLI GGNNCC 1 cut(s) 569
BspOI GCTAGC 1 cut(s) 12
BspPI GGATC 1 cut(s) 329
BspT104I TTCGAA 1 cut(s) 592
BsrI ACTGG 2 cut(s) 175, 323
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 6 cut(s) 321, 463, 513, 553, 575, 579
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 2 cut(s) 76, 119
Bst6I CTCTTC 1 cut(s) 217
BstBI TTCGAA 1 cut(s) 592
BstC8I GCNNGC 4 cut(s) 10, 32, 107, 447
BstDEI CTNAG 1 cut(s) 366
BstEII GGTNACC 1 cut(s) 610
BstF5I GGATG 2 cut(s) 65, 383
BstKTI GATC 6 cut(s) 324, 466, 516, 556, 578, 582
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 6 cut(s) 321, 463, 513, 553, 575, 579
BstMCI CGRYCG 1 cut(s) 578
BstMWI GCNNNNNNNGC 2 cut(s) 111, 197
BstNI CCWGG 1 cut(s) 275
BstNSI RCATGY 3 cut(s) 34, 359, 449
BstPI GGTNACC 1 cut(s) 610
BstSCI CCNGG 1 cut(s) 273
BstSFI CTRYAG 1 cut(s) 115
BstV2I GAAGAC 1 cut(s) 275
Bsu15I ATCGAT 1 cut(s) 578
Bsu36I CCTNAGG 1 cut(s) 366
BsuTUI ATCGAT 1 cut(s) 578
BtsCI GGATG 2 cut(s) 65, 383
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 2 cut(s) 124, 240
Cac8I GCNNGC 4 cut(s) 10, 32, 107, 447
Cfr13I GGNCC 1 cut(s) 567
ClaI ATCGAT 1 cut(s) 578
Csp6I GTAC 3 cut(s) 93, 136, 163
CviAII CATG 8 cut(s) 31, 325, 329, 356, 438, 446, 467, 621
CviJI RGCY 7 cut(s) 8, 109, 114, 191, 406, 483, 618
CviKI_1 RGCY 7 cut(s) 8, 109, 114, 191, 406, 483, 618
CviQI GTAC 3 cut(s) 93, 136, 163
DdeI CTNAG 1 cut(s) 366
DpnI GATC 6 cut(s) 323, 465, 515, 555, 577, 581
DpnII GATC 6 cut(s) 321, 463, 513, 553, 575, 579
Eam1104I CTCTTC 1 cut(s) 217
EarI CTCTTC 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 567
Eco57I CTGAAG 1 cut(s) 127
Eco81I CCTNAGG 1 cut(s) 366
Eco91I GGTNACC 1 cut(s) 610
EcoO65I GGTNACC 1 cut(s) 610
EcoRII CCWGG 1 cut(s) 273
EcoT22I ATGCAT 2 cut(s) 65, 330
FaeI CATG 8 cut(s) 34, 328, 332, 359, 441, 449, 470, 624
FaqI GGGAC 1 cut(s) 303
FatI CATG 8 cut(s) 30, 324, 328, 355, 437, 445, 466, 620
FauNDI CATATG 1 cut(s) 55
FbaI TGATCA 1 cut(s) 513
FokI GGATG 2 cut(s) 72, 390
FspBI CTAG 3 cut(s) 9, 414, 637
GsaI CCCAGC 1 cut(s) 113
Hin1II CATG 8 cut(s) 34, 328, 332, 359, 441, 449, 470, 624
HindIII AAGCTT 1 cut(s) 481
HinfI GANTC 2 cut(s) 204, 339
Hpy188I TCNGA 4 cut(s) 69, 352, 461, 553
Hpy188III TCNNGA 3 cut(s) 208, 368, 400
Hpy99I CGWCG 1 cut(s) 576
HpyAV CCTTC 2 cut(s) 205, 368
HpyCH4III ACNGT 2 cut(s) 76, 119
HpyCH4V TGCA 7 cut(s) 30, 47, 53, 63, 105, 328, 359
HpyF10VI GCNNNNNNNGC 2 cut(s) 111, 197
HpyF3I CTNAG 1 cut(s) 366
Hsp92II CATG 8 cut(s) 34, 328, 332, 359, 441, 449, 470, 624
Ksp22I TGATCA 1 cut(s) 513
Kzo9I GATC 6 cut(s) 321, 463, 513, 553, 575, 579
LweI GCATC 2 cut(s) 50, 92
MaeI CTAG 3 cut(s) 9, 414, 637
MaeIII GTNAC 3 cut(s) 146, 416, 610
MalI GATC 6 cut(s) 323, 465, 515, 555, 577, 581
MboI GATC 6 cut(s) 321, 463, 513, 553, 575, 579
MboII GAAGA 5 cut(s) 133, 234, 280, 383, 468
MhlI GDGCHC 1 cut(s) 298
MluCI AATT 2 cut(s) 38, 562
MlyI GAGTC 1 cut(s) 333
MnlI CCTC 2 cut(s) 258, 375
Mph1103I ATGCAT 2 cut(s) 65, 330
MseI TTAA 1 cut(s) 15
MslI CAYNNNNRTG 2 cut(s) 17, 58
MspR9I CCNGG 1 cut(s) 275
Mva1269I GAATGC 2 cut(s) 63, 395
MvaI CCWGG 1 cut(s) 275
MwoI GCNNNNNNNGC 2 cut(s) 111, 197
NdeI CATATG 1 cut(s) 55
NdeII GATC 6 cut(s) 321, 463, 513, 553, 575, 579
NheI GCTAGC 1 cut(s) 8
NlaIII CATG 8 cut(s) 34, 328, 332, 359, 441, 449, 470, 624
NlaIV GGNNCC 1 cut(s) 569
NmuCI GTSAC 2 cut(s) 146, 416
NsiI ATGCAT 2 cut(s) 65, 330
NspI RCATGY 3 cut(s) 34, 359, 449
NspV TTCGAA 1 cut(s) 592
PaeI GCATGC 2 cut(s) 34, 449
PcsI WCGNNNNNNNCGW 1 cut(s) 584
PctI GAATGC 2 cut(s) 63, 395
PfeI GAWTC 1 cut(s) 204
PflMI CCANNNNNTGG 2 cut(s) 41, 621
Ple19I CGATCG 1 cut(s) 578
PleI GAGTC 1 cut(s) 333
PpsI GAGTC 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 273
PspEI GGTNACC 1 cut(s) 610
PspFI CCCAGC 1 cut(s) 109
PspGI CCWGG 1 cut(s) 273
PspN4I GGNNCC 1 cut(s) 569
PspPI GGNCC 1 cut(s) 567
PsrI GAACNNNNNNTAC 2 cut(s) 119, 151
PvuI CGATCG 1 cut(s) 578
RsaI GTAC 3 cut(s) 94, 137, 164
RsaNI GTAC 3 cut(s) 93, 136, 163
RseI CAYNNNNRTG 2 cut(s) 17, 58
SaqAI TTAA 1 cut(s) 15
Sau3AI GATC 6 cut(s) 321, 463, 513, 553, 575, 579
Sau96I GGNCC 1 cut(s) 567
SchI GAGTC 1 cut(s) 333
ScrFI CCNGG 1 cut(s) 275
SduI GDGCHC 1 cut(s) 298
SetI ASST 8 cut(s) 10, 111, 301, 430, 485, 532, 544, 620
SfaNI GCATC 2 cut(s) 50, 92
SfcI CTRYAG 1 cut(s) 115
SfuI TTCGAA 1 cut(s) 592
SinI GGWCC 1 cut(s) 567
SmiMI CAYNNNNRTG 2 cut(s) 17, 58
SmlI CTYRAG 1 cut(s) 487
SmoI CTYRAG 1 cut(s) 487
SphI GCATGC 2 cut(s) 34, 449
Sse9I AATT 2 cut(s) 38, 562
SspMI CTAG 3 cut(s) 9, 414, 637
StyD4I CCNGG 1 cut(s) 273
TaaI ACNGT 2 cut(s) 76, 119
TaqI TCGA 5 cut(s) 178, 337, 574, 578, 592
TasI AATT 2 cut(s) 38, 562
TfiI GAWTC 1 cut(s) 204
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TscAI CASTG 2 cut(s) 124, 240
TseFI GTSAC 2 cut(s) 146, 416
Tsp45I GTSAC 2 cut(s) 146, 416
TspDTI ATGAA 2 cut(s) 345, 462
TspRI CASTG 2 cut(s) 124, 240
Van91I CCANNNNNTGG 2 cut(s) 41, 621
VpaK11BI GGWCC 1 cut(s) 567
XceI RCATGY 3 cut(s) 34, 359, 449
XspI CTAG 3 cut(s) 9, 414, 637
Zsp2I ATGCAT 2 cut(s) 65, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.