pycom05g12680

Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
16122843 .. 16124865
2023 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g12680.7

Sequence Viewer

Length: 603 bp
ATGAGAGGCTTTATCACCACAGCAACCGTACCTCTCTTTTCTTCCCATATCTTTCCCTGCAGGCATTGTGCCGTCACACCAATTCAGAGCATGCAGTTTAGCACTAAAAGTACACCGGCACCTGTACAGTCTGCAACTGATGGACTGATGGAAGGTAAGTCCAAGGATCTCTCTGTGAGTGGGGATTCCATACGCCGTCGGTTCCTTGATTTTTATGCTACCCGTGATCACAAGGTTCTTCCAAGTGCTTCTCTTGTGCCAGATGATCCCACAGTTCTACTAACAATTGCGGGAATGCTCCAATTTAAGCCTATATTTCTTGGTCAGGTTCCTAGACAAGTTCCTCGTGCCACAACTGCACAGAGATGCATACGTACAAATGATGTGGAGAATGTAGGCCGAACAACTCAACATCATACGTTCTTTGAGGTGCTGGGAAATTTTAGTTTTGGAGATTACTTCAAGGAGGAGCCATACAATAGTCCTATGGTATTCTTCTATTTGGGTTACCCGCTAACAGATTGTGGATTAGTGTCTTTGAAGAGGATAATGAAGCTTTTGAAATCTAGCATGACAAGATGGGCGTTCCTGTTGAGCGTATAA

Protein Analysis

201

Amino Acids

22.48

Weight (kDa)

9.44

Isoelectric Point (pI)

40.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018135)

Species Orthologous Gene IDs
pyrus_communis pycom05g12680
rosa_chinensis RchiOBHm_Chr6g0279761
rosa_laevigata RLG00000013123
rosa_multiflora Rmu_sc0001719.1_g000017
rosa_roxburghii Rroxscaffold_7G00188690
rosa_rugosa Rorug06G0127600
rosa_samantha Rh6AG236000 Rh6BG240200 Rh6CG242300 Rh6DG233900
rosa_wichuraiana Rw6G020570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 118
AciI CCGC 2 cut(s) 290, 512
AclWI GGATC 2 cut(s) 174, 260
AcsI RAATTY 1 cut(s) 439
AfaI GTAC 4 cut(s) 30, 112, 126, 376
AgsI TTSAA 3 cut(s) 463, 541, 562
AluBI AGCT 1 cut(s) 556
AluI AGCT 1 cut(s) 556
AlwI GGATC 2 cut(s) 174, 260
AoxI GGCC 1 cut(s) 397
ApoI RAATTY 1 cut(s) 439
AsuHPI GGTGA 1 cut(s) 7
BanI GGYRCC 1 cut(s) 118
BauI CACGAG 1 cut(s) 345
BccI CCATC 3 cut(s) 134, 142, 573
BceAI ACGGC 2 cut(s) 56, 180
BclI TGATCA 1 cut(s) 226
BfaI CTAG 2 cut(s) 333, 567
BfmI CTRYAG 1 cut(s) 58
BmiI GGNNCC 4 cut(s) 120, 203, 330, 471
BmsI GCATC 1 cut(s) 356
BsaAI YACGTR 1 cut(s) 374
BsaJI CCNNGG 1 cut(s) 162
Bse118I RCCGGY 1 cut(s) 115
BseDI CCNNGG 1 cut(s) 162
BseRI GAGGAG 1 cut(s) 482
BseYI CCCAGC 1 cut(s) 433
BsgI GTGCAG 1 cut(s) 342
BshFI GGCC 1 cut(s) 399
BshNI GGYRCC 1 cut(s) 118
BsiSI CCGG 1 cut(s) 116
BsmI GAATGC 1 cut(s) 300
BsnI GGCC 1 cut(s) 399
Bsp1407I TGTACA 1 cut(s) 124
Bsp143I GATC 3 cut(s) 166, 226, 265
BspACI CCGC 2 cut(s) 290, 512
BspANI GGCC 1 cut(s) 399
BspLI GGNNCC 4 cut(s) 120, 203, 330, 471
BspMAI CTGCAG 1 cut(s) 62
BspPI GGATC 2 cut(s) 174, 260
BspT107I GGYRCC 1 cut(s) 118
BsrFI RCCGGY 1 cut(s) 115
BsrGI TGTACA 1 cut(s) 124
BssAI RCCGGY 1 cut(s) 115
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 3 cut(s) 166, 226, 265
BssSI CACGAG 1 cut(s) 345
BssT1I CCWWGG 1 cut(s) 162
Bst2BI CACGAG 1 cut(s) 345
Bst4CI ACNGT 3 cut(s) 28, 129, 274
Bst6I CTCTTC 1 cut(s) 536
BstAUI TGTACA 1 cut(s) 124
BstBAI YACGTR 1 cut(s) 374
BstC8I GCNNGC 2 cut(s) 62, 92
BstEII GGTNACC 1 cut(s) 506
BstKTI GATC 3 cut(s) 169, 229, 268
BstMBI GATC 3 cut(s) 166, 226, 265
BstMWI GCNNNNNNNGC 1 cut(s) 356
BstNSI RCATGY 1 cut(s) 94
BstPI GGTNACC 1 cut(s) 506
BstSFI CTRYAG 1 cut(s) 58
BstSNI TACGTA 1 cut(s) 374
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BsuRI GGCC 1 cut(s) 399
Cac8I GCNNGC 2 cut(s) 62, 92
Cfr10I RCCGGY 1 cut(s) 115
Csp6I GTAC 4 cut(s) 29, 111, 125, 375
CspCI CAANNNNNGTGG 2 cut(s) 366, 401
CviAII CATG 2 cut(s) 91, 571
CviJI RGCY 5 cut(s) 9, 310, 399, 472, 556
CviKI_1 RGCY 5 cut(s) 9, 310, 399, 472, 556
CviQI GTAC 4 cut(s) 29, 111, 125, 375
DpnI GATC 3 cut(s) 168, 228, 267
DpnII GATC 3 cut(s) 166, 226, 265
Eam1104I CTCTTC 1 cut(s) 536
EarI CTCTTC 1 cut(s) 536
Eco105I TACGTA 1 cut(s) 374
Eco130I CCWWGG 1 cut(s) 162
Eco91I GGTNACC 1 cut(s) 506
EcoO65I GGTNACC 1 cut(s) 506
EcoT14I CCWWGG 1 cut(s) 162
EcoT22I ATGCAT 1 cut(s) 371
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 2 cut(s) 94, 574
FatI CATG 2 cut(s) 90, 570
FauI CCCGC 2 cut(s) 283, 519
FbaI TGATCA 1 cut(s) 226
FspBI CTAG 2 cut(s) 333, 567
GsaI CCCAGC 1 cut(s) 437
HaeIII GGCC 1 cut(s) 399
HapII CCGG 1 cut(s) 116
Hin1II CATG 2 cut(s) 94, 574
HindIII AAGCTT 1 cut(s) 554
HinfI GANTC 1 cut(s) 185
HpaII CCGG 1 cut(s) 116
HphI GGTGA 1 cut(s) 7
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 1 cut(s) 87
Hpy8I GTNNAC 1 cut(s) 113
Hpy99I CGWCG 1 cut(s) 201
HpyAV CCTTC 1 cut(s) 146
HpyCH4III ACNGT 3 cut(s) 28, 129, 274
HpyCH4IV ACGT 2 cut(s) 373, 419
HpyCH4V TGCA 5 cut(s) 60, 94, 134, 359, 369
HpyF10VI GCNNNNNNNGC 1 cut(s) 356
HpySE526I ACGT 2 cut(s) 373, 419
Hsp92II CATG 2 cut(s) 94, 574
Ksp22I TGATCA 1 cut(s) 226
Kzo9I GATC 3 cut(s) 166, 226, 265
LmnI GCTCC 2 cut(s) 303, 469
LpnPI CCDG 7 cut(s) 46, 70, 129, 135, 273, 311, 419
LweI GCATC 1 cut(s) 356
MaeI CTAG 2 cut(s) 333, 567
MaeII ACGT 2 cut(s) 373, 419
MaeIII GTNAC 2 cut(s) 73, 506
MalI GATC 3 cut(s) 168, 228, 267
MboI GATC 3 cut(s) 166, 226, 265
MboII GAAGA 4 cut(s) 33, 230, 487, 553
MfeI CAATTG 1 cut(s) 285
MflI RGATCY 1 cut(s) 166
MluCI AATT 4 cut(s) 81, 285, 302, 439
MnlI CCTC 5 cut(s) 42, 354, 421, 460, 537
Mph1103I ATGCAT 1 cut(s) 371
MseI TTAA 1 cut(s) 306
MslI CAYNNNNRTG 1 cut(s) 364
MspI CCGG 1 cut(s) 116
MunI CAATTG 1 cut(s) 285
Mva1269I GAATGC 1 cut(s) 300
MwoI GCNNNNNNNGC 1 cut(s) 356
NdeII GATC 3 cut(s) 166, 226, 265
NlaIII CATG 2 cut(s) 94, 574
NlaIV GGNNCC 4 cut(s) 120, 203, 330, 471
NmuCI GTSAC 1 cut(s) 73
NsiI ATGCAT 1 cut(s) 371
NspI RCATGY 1 cut(s) 94
PaeI GCATGC 1 cut(s) 94
PctI GAATGC 1 cut(s) 300
PfeI GAWTC 1 cut(s) 185
Ppu21I YACGTR 1 cut(s) 374
PspEI GGTNACC 1 cut(s) 506
PspFI CCCAGC 1 cut(s) 433
PspN4I GGNNCC 4 cut(s) 120, 203, 330, 471
PstI CTGCAG 1 cut(s) 62
PsuI RGATCY 1 cut(s) 166
RsaI GTAC 4 cut(s) 30, 112, 126, 376
RsaNI GTAC 4 cut(s) 29, 111, 125, 375
RseI CAYNNNNRTG 1 cut(s) 364
SaqAI TTAA 1 cut(s) 306
Sau3AI GATC 3 cut(s) 166, 226, 265
SbfI CCTGCAGG 1 cut(s) 62
SdaI CCTGCAGG 1 cut(s) 62
SetI ASST 9 cut(s) 34, 124, 157, 237, 330, 376, 422, 432, 558
SfaNI GCATC 1 cut(s) 356
SfcI CTRYAG 1 cut(s) 58
SmiMI CAYNNNNRTG 1 cut(s) 364
SnaBI TACGTA 1 cut(s) 374
SphI GCATGC 1 cut(s) 94
Sse8387I CCTGCAGG 1 cut(s) 62
Sse9I AATT 4 cut(s) 81, 285, 302, 439
SsiI CCGC 2 cut(s) 290, 512
SspMI CTAG 2 cut(s) 333, 567
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 3 cut(s) 28, 129, 274
TaiI ACGT 2 cut(s) 376, 422
TasI AATT 4 cut(s) 81, 285, 302, 439
TatI WGTACW 2 cut(s) 110, 124
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TseFI GTSAC 1 cut(s) 73
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 1 cut(s) 566
XapI RAATTY 1 cut(s) 439
XceI RCATGY 1 cut(s) 94
XspI CTAG 2 cut(s) 333, 567
Zsp2I ATGCAT 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.