Rorug06G0127600

Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
17725899 .. 17727354
1456 bp
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UTR
Exon/CDS
Intron
Rorug06G0127600.1

Sequence Viewer

Length: 711 bp
ATGGATTCAATCAATTTTTATGACATCAAAGCTGAGAAGACCAACGCCATATTGAGGTACCGCCAGCTTAGAAAGATTGGAAACTTTTTTCGGTTACTAGAAGTGTTTGTTGTTCTGCTCCTGATTTCCAGACTTTCTCTTCAACTCCCTAATGCTGTCAAGAACTCTGGCTTCTACTTCCGAGACATATCAGGCTTCATGTTCAGTCCTCGCTTTGTGTTCGTCGTTGGAAACATTATAGTCATCATTCTCTTTGCCAAGTCCGGTAGGTTCTCAGCTAAGGATTCAAGCACAGGTGGCTCAGGAGGTGATTTTTATGATGAGTTTGTTCAGAACAGTGAAAAGAATCAGAAGATTCGCCGAGATGAAATCGAGTACAAGGTCAATCAGAGCACATGTGACGGTGGTATAGTTCCTGTGCAAACTCATAGTTCCTTGGAAGTGAAGAACTACACAAGGAGTCAATCAGAGAACTACACAAGGAGTCAATCAGAGAACTTGAAACGCGAGCTTTGCCAGAACTCACGCCGTGTATTGAGGCGTTCAGAGACGGAGATGTTCAAGAAAAATATCAAGTCTGGTGAGAAGAAAGTGCCAGAAACTGTGTTCCCAGAAGATGGCATGAGCAACGAGGAGTTTCGCTGCAAGGTTGAGGCTTTCATTGCCAGGCAGCAGAAGTTTCGACTGCAAGAAGAATACTCTGTAATCTAA

Protein Analysis

236

Amino Acids

27.42

Weight (kDa)

9.45

Isoelectric Point (pI)

66.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018135)

Species Orthologous Gene IDs
pyrus_communis pycom05g12680
rosa_chinensis RchiOBHm_Chr6g0279761
rosa_laevigata RLG00000013123
rosa_multiflora Rmu_sc0001719.1_g000017
rosa_roxburghii Rroxscaffold_7G00188690
rosa_rugosa Rorug06G0127600
rosa_samantha Rh6AG236000 Rh6BG240200 Rh6CG242300 Rh6DG233900
rosa_wichuraiana Rw6G020570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 57
AccB1I GGYRCC 1 cut(s) 57
AccB7I CCANNNNNTGG 1 cut(s) 617
AccII CGCG 1 cut(s) 507
AciI CCGC 1 cut(s) 61
AdeI CACNNNGTG 1 cut(s) 530
AfaI GTAC 2 cut(s) 59, 377
AfiI CCNNNNNNNGG 2 cut(s) 54, 617
AflIII ACRYGT 1 cut(s) 395
AgsI TTSAA 5 cut(s) 9, 143, 288, 502, 562
AjnI CCWGG 1 cut(s) 665
AluBI AGCT 4 cut(s) 32, 67, 278, 511
AluI AGCT 4 cut(s) 32, 67, 278, 511
Alw21I GWGCWC 1 cut(s) 395
Alw26I GTCTC 2 cut(s) 177, 542
AlwNI CAGNNNCTG 1 cut(s) 602
ApeKI GCWGC 2 cut(s) 642, 670
Asp718I GGTACC 1 cut(s) 57
AsuHPI GGTGA 2 cut(s) 320, 593
BanI GGYRCC 1 cut(s) 57
BbsI GAAGAC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 395
BbvI GCAGC 2 cut(s) 629, 682
BccI CCATC 1 cut(s) 611
BceAI ACGGC 1 cut(s) 513
BcgI CGANNNNNNTGC 2 cut(s) 662, 696
BciT130I CCWGG 1 cut(s) 667
BcoDI GTCTC 2 cut(s) 177, 542
BfaI CTAG 1 cut(s) 98
BisI GCNGC 2 cut(s) 643, 671
BlsI GCNGC 2 cut(s) 644, 672
Bme1390I CCNGG 1 cut(s) 667
BmiI GGNNCC 1 cut(s) 59
BmrFI CCNGG 1 cut(s) 667
BpiI GAAGAC 1 cut(s) 44
Bpu10I CCTNAGC 2 cut(s) 279, 301
BsaJI CCNNGG 1 cut(s) 435
BsaWI WCCGGW 1 cut(s) 263
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 617
Bse3DI GCAATG 1 cut(s) 660
BseBI CCWGG 1 cut(s) 667
BseDI CCNNGG 1 cut(s) 435
BseLI CCNNNNNNNGG 2 cut(s) 54, 617
BseMI GCAATG 1 cut(s) 660
BseMII CTCAG 3 cut(s) 24, 288, 315
BseRI GAGGAG 1 cut(s) 647
BseXI GCAGC 2 cut(s) 629, 682
Bsh1236I CGCG 1 cut(s) 507
BshNI GGYRCC 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 395
BsiSI CCGG 1 cut(s) 264
BslI CCNNNNNNNGG 2 cut(s) 54, 617
BsmAI GTCTC 2 cut(s) 177, 542
BsmBI CGTCTC 1 cut(s) 542
Bsp1286I GDGCHC 1 cut(s) 395
BspACI CCGC 1 cut(s) 61
BspCNI CTCAG 3 cut(s) 25, 287, 314
BspFNI CGCG 1 cut(s) 507
BspLI GGNNCC 1 cut(s) 59
BspT107I GGYRCC 1 cut(s) 57
BsrDI GCAATG 1 cut(s) 660
BssECI CCNNGG 1 cut(s) 435
BssT1I CCWWGG 1 cut(s) 435
Bst2UI CCWGG 1 cut(s) 667
Bst4CI ACNGT 3 cut(s) 338, 404, 604
Bst6I CTCTTC 1 cut(s) 144
BstC8I GCNNGC 2 cut(s) 65, 509
BstDEI CTNAG 5 cut(s) 33, 68, 274, 279, 301
BstFNI CGCG 1 cut(s) 507
BstMAI GTCTC 2 cut(s) 177, 542
BstMWI GCNNNNNNNGC 3 cut(s) 297, 513, 662
BstNI CCWGG 1 cut(s) 667
BstNSI RCATGY 1 cut(s) 399
BstSCI CCNGG 1 cut(s) 665
BstUI CGCG 1 cut(s) 507
BstV1I GCAGC 2 cut(s) 629, 682
BstV2I GAAGAC 1 cut(s) 44
BtsIMutI CAGTG 1 cut(s) 343
Cac8I GCNNGC 2 cut(s) 65, 509
CaiI CAGNNNCTG 1 cut(s) 602
Csp6I GTAC 2 cut(s) 58, 376
CviAII CATG 3 cut(s) 199, 396, 622
CviJI RGCY 8 cut(s) 32, 67, 171, 195, 278, 300, 511, 656
CviKI_1 RGCY 8 cut(s) 32, 67, 171, 195, 278, 300, 511, 656
CviQI GTAC 2 cut(s) 58, 376
DdeI CTNAG 5 cut(s) 33, 68, 274, 279, 301
DraIII CACNNNGTG 1 cut(s) 530
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco130I CCWWGG 1 cut(s) 435
EcoRII CCWGG 1 cut(s) 665
EcoT14I CCWWGG 1 cut(s) 435
ErhI CCWWGG 1 cut(s) 435
Esp3I CGTCTC 1 cut(s) 542
FaeI CATG 3 cut(s) 202, 399, 625
FatI CATG 3 cut(s) 198, 395, 621
Fnu4HI GCNGC 2 cut(s) 643, 671
Fsp4HI GCNGC 2 cut(s) 643, 671
FspBI CTAG 1 cut(s) 98
GluI GCNGC 2 cut(s) 643, 671
HapII CCGG 1 cut(s) 264
Hin1II CATG 3 cut(s) 202, 399, 625
HinfI GANTC 6 cut(s) 5, 284, 346, 355, 460, 484
HpaII CCGG 1 cut(s) 264
HphI GGTGA 2 cut(s) 320, 593
Hpy188I TCNGA 7 cut(s) 182, 333, 351, 390, 469, 493, 547
Hpy188III TCNNGA 5 cut(s) 121, 129, 160, 303, 562
Hpy99I CGWCG 1 cut(s) 227
HpyCH4III ACNGT 3 cut(s) 338, 404, 604
HpyCH4V TGCA 3 cut(s) 421, 645, 688
HpyF10VI GCNNNNNNNGC 3 cut(s) 297, 513, 662
HpyF3I CTNAG 5 cut(s) 33, 68, 274, 279, 301
Hsp92II CATG 3 cut(s) 202, 399, 625
KpnI GGTACC 1 cut(s) 61
LmnI GCTCC 1 cut(s) 123
Lsp1109I GCAGC 2 cut(s) 629, 682
MaeI CTAG 1 cut(s) 98
MaeIII GTNAC 2 cut(s) 93, 398
MboII GAAGA 7 cut(s) 49, 131, 364, 457, 598, 626, 704
MhlI GDGCHC 1 cut(s) 395
MluCI AATT 1 cut(s) 13
MlyI GAGTC 2 cut(s) 469, 493
MmeI TCCRAC 1 cut(s) 208
MnlI CCTC 6 cut(s) 48, 219, 299, 531, 625, 646
MspI CCGG 1 cut(s) 264
MspR9I CCNGG 1 cut(s) 667
MvaI CCWGG 1 cut(s) 667
MvnI CGCG 1 cut(s) 507
MwoI GCNNNNNNNGC 3 cut(s) 297, 513, 662
NlaIII CATG 3 cut(s) 202, 399, 625
NlaIV GGNNCC 1 cut(s) 59
NmeAIII GCCGAG 1 cut(s) 386
NmuCI GTSAC 1 cut(s) 398
NspI RCATGY 1 cut(s) 399
PciI ACATGT 1 cut(s) 395
PfeI GAWTC 4 cut(s) 5, 284, 346, 355
PflMI CCANNNNNTGG 1 cut(s) 617
PkrI GCNGC 2 cut(s) 644, 672
PleI GAGTC 2 cut(s) 468, 492
PpsI GAGTC 2 cut(s) 468, 492
PscI ACATGT 1 cut(s) 395
Psp6I CCWGG 1 cut(s) 665
PspGI CCWGG 1 cut(s) 665
PspN4I GGNNCC 1 cut(s) 59
PstNI CAGNNNCTG 1 cut(s) 602
RsaI GTAC 2 cut(s) 59, 377
RsaNI GTAC 2 cut(s) 58, 376
SatI GCNGC 2 cut(s) 643, 671
SchI GAGTC 2 cut(s) 469, 493
ScrFI CCNGG 1 cut(s) 667
SduI GDGCHC 1 cut(s) 395
Sse9I AATT 1 cut(s) 13
SsiI CCGC 1 cut(s) 61
SspMI CTAG 1 cut(s) 98
StyD4I CCNGG 1 cut(s) 665
StyI CCWWGG 1 cut(s) 435
TaaI ACNGT 3 cut(s) 338, 404, 604
TaqI TCGA 2 cut(s) 372, 682
TasI AATT 1 cut(s) 13
TatI WGTACW 1 cut(s) 375
TfiI GAWTC 4 cut(s) 5, 284, 346, 355
TscAI CASTG 1 cut(s) 343
TseFI GTSAC 1 cut(s) 398
TseI GCWGC 2 cut(s) 642, 670
Tsp45I GTSAC 1 cut(s) 398
TspDTI ATGAA 3 cut(s) 187, 381, 649
TspGWI ACGGA 1 cut(s) 566
TspRI CASTG 1 cut(s) 343
Van91I CCANNNNNTGG 1 cut(s) 617
XceI RCATGY 1 cut(s) 399
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.