Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0018135

Physical Location & Seq

Genomic Coordinates Forward (+)

16122843 .. 16124865

Gene Structure 2023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGAGAGGCTTTATCACCACAGCAACCGTACCTCTCTTTTCTTCCCATATCTTTCCCTGCAGGCATTGTGCCGTCACACCAATTCAGAGCATGCAGTTTAGCACTAAAAGTACACCGGCACCTGTACAGTCTGCAACTGATGGACTGATGGAAGGTAAGTCCAAGGATCTCTCTGTGAGTGGGGATTCCATACGCCGTCGGTTCCTTGATTTTTATGCTACCCGTGATCACAAGGTTCTTCCAAGTGCTTCTCTTGTGCCAGATGATCCCACAGTTCTACTAACAATTGCGGGAATGCTCCAATTTAAGCCTATATTTCTTGGTCAGGTTCCTAGACAAGTTCCTCGTGCCACAACTGCACAGAGATGCATACGTACAAATGATGTGGAGAATGTAGGCCGAACAACTCAACATCATACGTTCTTTGAGGTGCTGGGAAATTTTAGTTTTGGAGATTACTTCAAGGAGGAGCCATACAATAGTCCTATGGTATTCTTCTATTTGGGTTACCCGCTAACAGATTGTGGATTAGTGTCTTTGAAGAGGATAATGAAGCTTTTGAAATCTAGCATGACAAGATGGGCGTTCCTGTTGAGCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000049 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004812 GO:0004813 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006412 GO:0006418 GO:0006419 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016020 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0031406 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0036094 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

DHHA1 tRNA-synt_2c tRNA_SAD

Protein Analysis

201

Amino Acids

22.48

Weight (kDa)

9.44

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2c	PF01411	64 - 157	1.6e-44	tRNA synthetases class II (A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018135)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g12680
rosa_chinensis	RchiOBHm_Chr6g0279761
rosa_laevigata	RLG00000013123
rosa_multiflora	Rmu_sc0001719.1_g000017
rosa_roxburghii	Rroxscaffold_7G00188690
rosa_rugosa	Rorug06G0127600
rosa_samantha	Rh6AG236000 Rh6BG240200 Rh6CG242300 Rh6DG233900
rosa_wichuraiana	Rw6G020570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	118
AciI	CCGC	2 cut(s)	290, 512
AclWI	GGATC	2 cut(s)	174, 260
AcsI	RAATTY	1 cut(s)	439
AfaI	GTAC	4 cut(s)	30, 112, 126, 376
AgsI	TTSAA	3 cut(s)	463, 541, 562
AluBI	AGCT	1 cut(s)	556
AluI	AGCT	1 cut(s)	556
AlwI	GGATC	2 cut(s)	174, 260
AoxI	GGCC	1 cut(s)	397
ApoI	RAATTY	1 cut(s)	439
AsuHPI	GGTGA	1 cut(s)	7
BanI	GGYRCC	1 cut(s)	118
BauI	CACGAG	1 cut(s)	345
BccI	CCATC	3 cut(s)	134, 142, 573
BceAI	ACGGC	2 cut(s)	56, 180
BclI	TGATCA	1 cut(s)	226
BfaI	CTAG	2 cut(s)	333, 567
BfmI	CTRYAG	1 cut(s)	58
BmiI	GGNNCC	4 cut(s)	120, 203, 330, 471
BmsI	GCATC	1 cut(s)	356
BsaAI	YACGTR	1 cut(s)	374
BsaJI	CCNNGG	1 cut(s)	162
Bse118I	RCCGGY	1 cut(s)	115
BseDI	CCNNGG	1 cut(s)	162
BseRI	GAGGAG	1 cut(s)	482
BseYI	CCCAGC	1 cut(s)	433
BsgI	GTGCAG	1 cut(s)	342
BshFI	GGCC	1 cut(s)	399
BshNI	GGYRCC	1 cut(s)	118
BsiSI	CCGG	1 cut(s)	116
BsmI	GAATGC	1 cut(s)	300
BsnI	GGCC	1 cut(s)	399
Bsp1407I	TGTACA	1 cut(s)	124
Bsp143I	GATC	3 cut(s)	166, 226, 265
BspACI	CCGC	2 cut(s)	290, 512
BspANI	GGCC	1 cut(s)	399
BspLI	GGNNCC	4 cut(s)	120, 203, 330, 471
BspMAI	CTGCAG	1 cut(s)	62
BspPI	GGATC	2 cut(s)	174, 260
BspT107I	GGYRCC	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	115
BsrGI	TGTACA	1 cut(s)	124
BssAI	RCCGGY	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	3 cut(s)	166, 226, 265
BssSI	CACGAG	1 cut(s)	345
BssT1I	CCWWGG	1 cut(s)	162
Bst2BI	CACGAG	1 cut(s)	345
Bst4CI	ACNGT	3 cut(s)	28, 129, 274
Bst6I	CTCTTC	1 cut(s)	536
BstAUI	TGTACA	1 cut(s)	124
BstBAI	YACGTR	1 cut(s)	374
BstC8I	GCNNGC	2 cut(s)	62, 92
BstEII	GGTNACC	1 cut(s)	506
BstKTI	GATC	3 cut(s)	169, 229, 268
BstMBI	GATC	3 cut(s)	166, 226, 265
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstNSI	RCATGY	1 cut(s)	94
BstPI	GGTNACC	1 cut(s)	506
BstSFI	CTRYAG	1 cut(s)	58
BstSNI	TACGTA	1 cut(s)	374
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	399
Cac8I	GCNNGC	2 cut(s)	62, 92
Cfr10I	RCCGGY	1 cut(s)	115
Csp6I	GTAC	4 cut(s)	29, 111, 125, 375
CspCI	CAANNNNNGTGG	2 cut(s)	366, 401
CviAII	CATG	2 cut(s)	91, 571
CviJI	RGCY	5 cut(s)	9, 310, 399, 472, 556
CviKI_1	RGCY	5 cut(s)	9, 310, 399, 472, 556
CviQI	GTAC	4 cut(s)	29, 111, 125, 375
DpnI	GATC	3 cut(s)	168, 228, 267
DpnII	GATC	3 cut(s)	166, 226, 265
Eam1104I	CTCTTC	1 cut(s)	536
EarI	CTCTTC	1 cut(s)	536
Eco105I	TACGTA	1 cut(s)	374
Eco130I	CCWWGG	1 cut(s)	162
Eco91I	GGTNACC	1 cut(s)	506
EcoO65I	GGTNACC	1 cut(s)	506
EcoT14I	CCWWGG	1 cut(s)	162
EcoT22I	ATGCAT	1 cut(s)	371
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	2 cut(s)	94, 574
FatI	CATG	2 cut(s)	90, 570
FauI	CCCGC	2 cut(s)	283, 519
FbaI	TGATCA	1 cut(s)	226
FspBI	CTAG	2 cut(s)	333, 567
GsaI	CCCAGC	1 cut(s)	437
HaeIII	GGCC	1 cut(s)	399
HapII	CCGG	1 cut(s)	116
Hin1II	CATG	2 cut(s)	94, 574
HindIII	AAGCTT	1 cut(s)	554
HinfI	GANTC	1 cut(s)	185
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	1 cut(s)	7
Hpy166II	GTNNAC	1 cut(s)	113
Hpy188I	TCNGA	1 cut(s)	87
Hpy8I	GTNNAC	1 cut(s)	113
Hpy99I	CGWCG	1 cut(s)	201
HpyAV	CCTTC	1 cut(s)	146
HpyCH4III	ACNGT	3 cut(s)	28, 129, 274
HpyCH4IV	ACGT	2 cut(s)	373, 419
HpyCH4V	TGCA	5 cut(s)	60, 94, 134, 359, 369
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpySE526I	ACGT	2 cut(s)	373, 419
Hsp92II	CATG	2 cut(s)	94, 574
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	3 cut(s)	166, 226, 265
LmnI	GCTCC	2 cut(s)	303, 469
LpnPI	CCDG	7 cut(s)	46, 70, 129, 135, 273, 311, 419
LweI	GCATC	1 cut(s)	356
MaeI	CTAG	2 cut(s)	333, 567
MaeII	ACGT	2 cut(s)	373, 419
MaeIII	GTNAC	2 cut(s)	73, 506
MalI	GATC	3 cut(s)	168, 228, 267
MboI	GATC	3 cut(s)	166, 226, 265
MboII	GAAGA	4 cut(s)	33, 230, 487, 553
MfeI	CAATTG	1 cut(s)	285
MflI	RGATCY	1 cut(s)	166
MluCI	AATT	4 cut(s)	81, 285, 302, 439
MnlI	CCTC	5 cut(s)	42, 354, 421, 460, 537
Mph1103I	ATGCAT	1 cut(s)	371
MseI	TTAA	1 cut(s)	306
MslI	CAYNNNNRTG	1 cut(s)	364
MspI	CCGG	1 cut(s)	116
MunI	CAATTG	1 cut(s)	285
Mva1269I	GAATGC	1 cut(s)	300
MwoI	GCNNNNNNNGC	1 cut(s)	356
NdeII	GATC	3 cut(s)	166, 226, 265
NlaIII	CATG	2 cut(s)	94, 574
NlaIV	GGNNCC	4 cut(s)	120, 203, 330, 471
NmuCI	GTSAC	1 cut(s)	73
NsiI	ATGCAT	1 cut(s)	371
NspI	RCATGY	1 cut(s)	94
PaeI	GCATGC	1 cut(s)	94
PctI	GAATGC	1 cut(s)	300
PfeI	GAWTC	1 cut(s)	185
Ppu21I	YACGTR	1 cut(s)	374
PspEI	GGTNACC	1 cut(s)	506
PspFI	CCCAGC	1 cut(s)	433
PspN4I	GGNNCC	4 cut(s)	120, 203, 330, 471
PstI	CTGCAG	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	166
RsaI	GTAC	4 cut(s)	30, 112, 126, 376
RsaNI	GTAC	4 cut(s)	29, 111, 125, 375
RseI	CAYNNNNRTG	1 cut(s)	364
SaqAI	TTAA	1 cut(s)	306
Sau3AI	GATC	3 cut(s)	166, 226, 265
SbfI	CCTGCAGG	1 cut(s)	62
SdaI	CCTGCAGG	1 cut(s)	62
SetI	ASST	9 cut(s)	34, 124, 157, 237, 330, 376, 422, 432, 558
SfaNI	GCATC	1 cut(s)	356
SfcI	CTRYAG	1 cut(s)	58
SmiMI	CAYNNNNRTG	1 cut(s)	364
SnaBI	TACGTA	1 cut(s)	374
SphI	GCATGC	1 cut(s)	94
Sse8387I	CCTGCAGG	1 cut(s)	62
Sse9I	AATT	4 cut(s)	81, 285, 302, 439
SsiI	CCGC	2 cut(s)	290, 512
SspMI	CTAG	2 cut(s)	333, 567
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	3 cut(s)	28, 129, 274
TaiI	ACGT	2 cut(s)	376, 422
TasI	AATT	4 cut(s)	81, 285, 302, 439
TatI	WGTACW	2 cut(s)	110, 124
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TseFI	GTSAC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	566
XapI	RAATTY	1 cut(s)	439
XceI	RCATGY	1 cut(s)	94
XspI	CTAG	2 cut(s)	333, 567
Zsp2I	ATGCAT	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.