pycom05g15090

Fimbrin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0013823
Physical Location & Seq
Reverse (-)
18609624 .. 18613036
3413 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g15090.5

Sequence Viewer

Length: 1506 bp
ATGGAGTACTTTTATGTAAGCTCGATCAATGTGGCAGTGCCAGGAACAATCGATGAACGAGCTATCAATACTAAACGAGTACTTAATCCATGGGAGAGAAATGAAAATCACACCTTGTGCCTCAACTCAGCTAAGGCTGTTGGATGTACTGTGGTCAATATTGGGACTCAGGATTTCATTGAAGGAAGGCGTCATCTTGTTCTTGGAGTGATTTCTCAGATAATCAAGATACAACTCTTGGCAGACCTCAACTTGAAGAAAACACCTCAATTGGTGGAGTTGGTTGACGATAGCAAGGATGTGGAAGAGTTGATGAGTCTACCACCAGAAAAGATATTACTGAGATGGATGAATTTCCAATTGAAGAAAGCTGGATATCAGAAGATAGTCACAAACTTCTCCTCTGATGTGAAGGATGCAGAGGCTTATGCTCACCTCCTAAATGTTCTAGCACCGGAGCACAGTAAACCATCTGCATTGGATGCAAAGAATCCTATGGAAAGAGCAAAGTTAGTTCTTGAACATGCAGATAGGATGGGCTGCAAGAGATATTTGACAGCAAAAGATATTTTTGAAGGATCCCCGAATCTTAACCTTGCCTTTGTTGCACATATTTTCCAGCATAGAAATGGACTCTCAACACAAACAAAGCAGATATCATTCCTTGACAATTTGGAAGATGACACCCAAATCTCTAGAGAAGAGAGAGCATTTCGCTTTTGGATGAATAGTCTCGGGAATTCATCATATATCAATAATGTCTTTGAAGACCTCAGAAACGGGTGGGCGCTTCTGGAGTCACTGGACAAGATTTCACCTGGCATTGTAAATTGGAAGATTGCAAACAAGCCTCCAATTAAAATGCCATTCAAGAAAGTAGAAAACTGCAACCAAGTTGTAAAAATTGGAAAGCAACTGAAGTTTTCTTTGGTGAATATTGCTGGAAATGACATCGTTCAGGGGAATAAAAAGTTAATACTTGCTTATTTGTGGCAATTGATGCGGTACAACATCCTCCAACTACTAAAGAACTTGAGATTTCATTCCCATGGGAAGGAAATTGCTGATGCTGATATTCTAGAATGGGCCAACACCAAAGTCAGCAGCACGGGAAGCCAGAGCTGCATGAAAAGTTTTAAGGATAAGAGTTTGTCAGCTGGAATTTTCTTCCTTGAGTTGCTAAGCTGTGTGCAGCCTAGAGTGGTGAACTGGAGTCTCGTAACAAAAGGAGTAACGGATGAGGAGAAGAAGATGAATGCCACTTACATTATCAGTATTGCAAGAAAGCTCGGATGTTCGATATTTTTGCTTCCTGAAGACATAACTGAGGTGAATCAAAAGATGATTCTTACTTTGACTGCAAGCATTATGTACTGGTTTTTGAAACAGCCTGTCGTAGATCGACGGTCTGTGATTTCCGATAGTGAGGGTTCAAGCATTGTCTCCAATTCCACTACTGATGACTCCGCTTCGGAGTCATCAATGGAGGAGAATGGAAATATATAA

Protein Analysis

502

Amino Acids

56.57

Weight (kDa)

8.29

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013823)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48460
fragaria_vesca FvH4_2g17780 FvH4_2g17780
malus_domestica MD05G1159000.v1.1 MD10G1151800.v1.1
prunus_persica Prupe.8G190200_v2.0.a1
pyrus_communis pycom05g15090 pycom10g13080
rosa_chinensis RchiOBHm_Chr6g0282801
rosa_laevigata RLG00000012868
rosa_multiflora Rmu_sc0018221.1_g000009
rosa_roxburghii Rroxscaffold_7G00186020
rosa_rugosa Rorug06G0149800
rosa_samantha Rh6AG262800 Rh6CG265000 Rh6DG257500
rosa_wichuraiana Rw6G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 319
AciI CCGC 2 cut(s) 1003, 1467
AclWI GGATC 2 cut(s) 573, 586
AcsI RAATTY 3 cut(s) 352, 739, 1161
AcuI CTGAAG 2 cut(s) 938, 1335
AcyI GRCGYC 1 cut(s) 190
AdeI CACNNNGTG 1 cut(s) 117
AfaI GTAC 5 cut(s) 8, 81, 148, 1007, 1373
AfiI CCNNNNNNNGG 1 cut(s) 1054
AgsI TTSAA 9 cut(s) 182, 256, 364, 521, 575, 767, 871, 1384, 1434
AjnI CCWGG 2 cut(s) 40, 817
AjuI GAANNNNNNNTTGG 2 cut(s) 911, 943
AluBI AGCT 8 cut(s) 21, 62, 131, 371, 1122, 1157, 1185, 1288
AluI AGCT 8 cut(s) 21, 62, 131, 371, 1122, 1157, 1185, 1288
Alw21I GWGCWC 1 cut(s) 462
Alw26I GTCTC 3 cut(s) 737, 1220, 1447
AlwI GGATC 2 cut(s) 573, 586
Ama87I CYCGRG 1 cut(s) 734
AoxI GGCC 1 cut(s) 1086
ApeKI GCWGC 4 cut(s) 540, 1104, 1122, 1192
ApoI RAATTY 3 cut(s) 352, 739, 1161
AspLEI GCGC 1 cut(s) 790
AspS9I GGNCC 1 cut(s) 1086
AsuHPI GGTGA 5 cut(s) 425, 807, 943, 1216, 1342
AvaI CYCGRG 1 cut(s) 734
BamHI GGATCC 1 cut(s) 578
BbsI GAAGAC 2 cut(s) 774, 1323
Bbv12I GWGCWC 1 cut(s) 462
BbvI GCAGC 4 cut(s) 527, 1109, 1116, 1204
BccI CCATC 3 cut(s) 339, 478, 529
BcgI CGANNNNNNTGC 2 cut(s) 1288, 1322
BciT130I CCWGG 2 cut(s) 42, 819
BcoDI GTCTC 3 cut(s) 737, 1220, 1447
BfaI CTAG 4 cut(s) 449, 696, 1079, 1197
BfoI RGCGCY 1 cut(s) 791
BisI GCNGC 4 cut(s) 541, 1105, 1123, 1193
BlpI GCTNAGC 1 cut(s) 1181
BlsI GCNGC 4 cut(s) 542, 1106, 1124, 1194
BmcAI AGTACT 2 cut(s) 8, 81
Bme1390I CCNGG 2 cut(s) 42, 819
BmeT110I CYCGRG 1 cut(s) 734
BmgT120I GGNCC 1 cut(s) 1086
BmiI GGNNCC 1 cut(s) 580
BmrFI CCNGG 2 cut(s) 42, 819
BmsI GCATC 4 cut(s) 406, 472, 990, 1057
BpiI GAAGAC 2 cut(s) 774, 1323
BpmI CTGGAG 2 cut(s) 815, 1231
Bpu10I CCTNAGC 1 cut(s) 132
Bpu1102I GCTNAGC 1 cut(s) 1181
BpuEI CTTGAG 2 cut(s) 1054, 1193
Bsa29I ATCGAT 1 cut(s) 51
BsaHI GRCGYC 1 cut(s) 190
BsaJI CCNNGG 2 cut(s) 89, 1048
BsaWI WCCGGW 1 cut(s) 454
Bsc4I CCNNNNNNNGG 1 cut(s) 1054
Bse1I ACTGG 3 cut(s) 807, 1214, 1379
BseBI CCWGG 2 cut(s) 42, 819
BseCI ATCGAT 1 cut(s) 51
BseDI CCNNGG 2 cut(s) 89, 1048
BseLI CCNNNNNNNGG 1 cut(s) 1054
BseMII CTCAG 6 cut(s) 141, 182, 230, 332, 787, 1317
BseNI ACTGG 3 cut(s) 807, 1214, 1379
BseRI GAGGAG 3 cut(s) 391, 1256, 1502
BseXI GCAGC 4 cut(s) 527, 1109, 1116, 1204
BsgI GTGCAG 1 cut(s) 1211
BshFI GGCC 1 cut(s) 1088
BshVI ATCGAT 1 cut(s) 51
BsiHKAI GWGCWC 1 cut(s) 462
BsiHKCI CYCGRG 1 cut(s) 734
BsiSI CCGG 1 cut(s) 455
BslFI GGGAC 1 cut(s) 178
BslI CCNNNNNNNGG 1 cut(s) 1054
BsmAI GTCTC 3 cut(s) 737, 1220, 1447
BsmFI GGGAC 1 cut(s) 178
BsmI GAATGC 1 cut(s) 1261
BsnI GGCC 1 cut(s) 1088
BsoBI CYCGRG 1 cut(s) 734
Bsp1286I GDGCHC 1 cut(s) 462
Bsp143I GATC 3 cut(s) 24, 578, 1399
Bsp1720I GCTNAGC 1 cut(s) 1181
Bsp19I CCATGG 2 cut(s) 89, 1048
BspACI CCGC 2 cut(s) 1003, 1467
BspANI GGCC 1 cut(s) 1088
BspCNI CTCAG 6 cut(s) 140, 181, 229, 333, 786, 1318
BspDI ATCGAT 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 580
BspPI GGATC 2 cut(s) 573, 586
BsrI ACTGG 3 cut(s) 807, 1214, 1379
BssECI CCNNGG 2 cut(s) 89, 1048
BssMI GATC 3 cut(s) 24, 578, 1399
BssNI GRCGYC 1 cut(s) 190
BssT1I CCWWGG 2 cut(s) 89, 1048
Bst2UI CCWGG 2 cut(s) 42, 819
Bst4CI ACNGT 3 cut(s) 151, 464, 1407
Bst6I CTCTTC 2 cut(s) 300, 696
BstACI GRCGYC 1 cut(s) 190
BstAPI GCANNNNNTGC 2 cut(s) 482, 1000
BstC8I GCNNGC 1 cut(s) 1363
BstDEI CTNAG 8 cut(s) 127, 132, 168, 216, 341, 773, 1181, 1326
BstDSI CCRYGG 2 cut(s) 89, 1048
BstH2I RGCGCY 1 cut(s) 791
BstHHI GCGC 1 cut(s) 790
BstKTI GATC 3 cut(s) 27, 581, 1402
BstMAI GTCTC 3 cut(s) 737, 1220, 1447
BstMBI GATC 3 cut(s) 24, 578, 1399
BstMWI GCNNNNNNNGC 5 cut(s) 482, 605, 1000, 1113, 1122
BstNI CCWGG 2 cut(s) 42, 819
BstNSI RCATGY 1 cut(s) 527
BstSCI CCNGG 2 cut(s) 40, 817
BstV1I GCAGC 4 cut(s) 527, 1109, 1116, 1204
BstV2I GAAGAC 2 cut(s) 774, 1323
BstX2I RGATCY 1 cut(s) 578
BstYI RGATCY 1 cut(s) 578
Bsu15I ATCGAT 1 cut(s) 51
BsuRI GGCC 1 cut(s) 1088
BsuTUI ATCGAT 1 cut(s) 51
BtgI CCRYGG 2 cut(s) 89, 1048
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 2 cut(s) 42, 800
Cac8I GCNNGC 1 cut(s) 1363
CfoI GCGC 1 cut(s) 790
Cfr13I GGNCC 1 cut(s) 1086
ClaI ATCGAT 1 cut(s) 51
CseI GACGC 1 cut(s) 179
Csp6I GTAC 5 cut(s) 7, 80, 147, 1006, 1372
CviAII CATG 4 cut(s) 90, 524, 1049, 1126
CviQI GTAC 5 cut(s) 7, 80, 147, 1006, 1372
DdeI CTNAG 8 cut(s) 127, 132, 168, 216, 341, 773, 1181, 1326
DpnI GATC 3 cut(s) 26, 580, 1401
DpnII GATC 3 cut(s) 24, 578, 1399
DraIII CACNNNGTG 1 cut(s) 117
Eam1104I CTCTTC 2 cut(s) 300, 696
EarI CTCTTC 2 cut(s) 300, 696
Eco130I CCWWGG 2 cut(s) 89, 1048
Eco32I GATATC 2 cut(s) 377, 657
Eco57I CTGAAG 2 cut(s) 938, 1335
Eco88I CYCGRG 1 cut(s) 734
EcoRI GAATTC 1 cut(s) 739
EcoRII CCWGG 2 cut(s) 40, 817
EcoRV GATATC 2 cut(s) 377, 657
EcoT14I CCWWGG 2 cut(s) 89, 1048
ErhI CCWWGG 2 cut(s) 89, 1048
FaeI CATG 4 cut(s) 93, 527, 1052, 1129
FaqI GGGAC 1 cut(s) 178
FatI CATG 4 cut(s) 89, 523, 1048, 1125
FblI GTMKAC 1 cut(s) 319
Fnu4HI GCNGC 4 cut(s) 541, 1105, 1123, 1193
Fsp4HI GCNGC 4 cut(s) 541, 1105, 1123, 1193
FspBI CTAG 4 cut(s) 449, 696, 1079, 1197
GlaI GCGC 1 cut(s) 789
GluI GCNGC 4 cut(s) 541, 1105, 1123, 1193
GsuI CTGGAG 2 cut(s) 815, 1231
HaeII RGCGCY 1 cut(s) 791
HaeIII GGCC 1 cut(s) 1088
HapII CCGG 1 cut(s) 455
HgaI GACGC 1 cut(s) 179
HhaI GCGC 1 cut(s) 790
Hin1I GRCGYC 1 cut(s) 190
Hin1II CATG 4 cut(s) 93, 527, 1052, 1129
Hin6I GCGC 1 cut(s) 788
HinP1I GCGC 1 cut(s) 788
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HpaII CCGG 1 cut(s) 455
HphI GGTGA 5 cut(s) 425, 807, 943, 1216, 1342
Hpy166II GTNNAC 4 cut(s) 286, 320, 467, 1207
Hpy188I TCNGA 7 cut(s) 219, 381, 406, 776, 1292, 1420, 1474
Hpy188III TCNNGA 9 cut(s) 170, 226, 518, 696, 736, 794, 871, 1079, 1313
Hpy8I GTNNAC 4 cut(s) 286, 320, 467, 1207
Hpy99I CGWCG 1 cut(s) 1407
HpyAV CCTTC 5 cut(s) 176, 180, 406, 569, 1048
HpyCH4III ACNGT 3 cut(s) 151, 464, 1407
HpyF10VI GCNNNNNNNGC 5 cut(s) 482, 605, 1000, 1113, 1122
HpyF3I CTNAG 8 cut(s) 127, 132, 168, 216, 341, 773, 1181, 1326
Hsp92I GRCGYC 1 cut(s) 190
Hsp92II CATG 4 cut(s) 93, 527, 1052, 1129
HspAI GCGC 1 cut(s) 788
Kzo9I GATC 3 cut(s) 24, 578, 1399
LmnI GCTCC 1 cut(s) 457
Lsp1109I GCAGC 4 cut(s) 527, 1109, 1116, 1204
LweI GCATC 4 cut(s) 406, 472, 990, 1057
MaeI CTAG 4 cut(s) 449, 696, 1079, 1197
MaeIII GTNAC 4 cut(s) 388, 798, 1219, 1231
MalI GATC 3 cut(s) 26, 580, 1401
MboI GATC 3 cut(s) 24, 578, 1399
MfeI CAATTG 3 cut(s) 269, 359, 995
MflI RGATCY 1 cut(s) 578
MhlI GDGCHC 1 cut(s) 462
MlyI GAGTC 7 cut(s) 160, 325, 627, 806, 1222, 1457, 1484
MmeI TCCRAC 2 cut(s) 121, 1042
MseI TTAA 5 cut(s) 84, 591, 858, 974, 1137
MslI CAYNNNNRTG 2 cut(s) 627, 1047
MspA1I CMGCKG 1 cut(s) 1157
MspI CCGG 1 cut(s) 455
MspR9I CCNGG 2 cut(s) 42, 819
MunI CAATTG 3 cut(s) 269, 359, 995
Mva1269I GAATGC 1 cut(s) 1261
MvaI CCWGG 2 cut(s) 42, 819
MwoI GCNNNNNNNGC 5 cut(s) 482, 605, 1000, 1113, 1122
NcoI CCATGG 2 cut(s) 89, 1048
NdeII GATC 3 cut(s) 24, 578, 1399
NlaIII CATG 4 cut(s) 93, 527, 1052, 1129
NlaIV GGNNCC 1 cut(s) 580
NmuCI GTSAC 2 cut(s) 388, 798
NspI RCATGY 1 cut(s) 527
PctI GAATGC 1 cut(s) 1261
PfeI GAWTC 4 cut(s) 490, 586, 1333, 1345
PkrI GCNGC 4 cut(s) 542, 1106, 1124, 1194
PleI GAGTC 7 cut(s) 160, 324, 627, 805, 1221, 1457, 1483
PpsI GAGTC 7 cut(s) 160, 324, 627, 805, 1221, 1457, 1483
Psp6I CCWGG 2 cut(s) 40, 817
PspGI CCWGG 2 cut(s) 40, 817
PspN4I GGNNCC 1 cut(s) 580
PspPI GGNCC 1 cut(s) 1086
PsuI RGATCY 1 cut(s) 578
PvuII CAGCTG 1 cut(s) 1157
RsaI GTAC 5 cut(s) 8, 81, 148, 1007, 1373
RsaNI GTAC 5 cut(s) 7, 80, 147, 1006, 1372
RseI CAYNNNNRTG 2 cut(s) 627, 1047
SaqAI TTAA 5 cut(s) 84, 591, 858, 974, 1137
SatI GCNGC 4 cut(s) 541, 1105, 1123, 1193
Sau3AI GATC 3 cut(s) 24, 578, 1399
Sau96I GGNCC 1 cut(s) 1086
ScaI AGTACT 2 cut(s) 8, 81
SchI GAGTC 7 cut(s) 160, 325, 627, 806, 1222, 1457, 1484
ScrFI CCNGG 2 cut(s) 42, 819
SduI GDGCHC 1 cut(s) 462
SfaNI GCATC 4 cut(s) 406, 472, 990, 1057
SmiMI CAYNNNNRTG 2 cut(s) 627, 1047
SmlI CTYRAG 2 cut(s) 1033, 1172
SmoI CTYRAG 2 cut(s) 1033, 1172
SsiI CCGC 2 cut(s) 1003, 1467
SspI AATATT 2 cut(s) 160, 937
SspMI CTAG 4 cut(s) 449, 696, 1079, 1197
StyD4I CCNGG 2 cut(s) 40, 817
StyI CCWWGG 2 cut(s) 89, 1048
TaaI ACNGT 3 cut(s) 151, 464, 1407
TaqI TCGA 4 cut(s) 23, 51, 1298, 1402
TatI WGTACW 4 cut(s) 6, 79, 146, 1371
TfiI GAWTC 4 cut(s) 490, 586, 1333, 1345
Tru1I TTAA 5 cut(s) 84, 591, 858, 974, 1137
Tru9I TTAA 5 cut(s) 84, 591, 858, 974, 1137
TscAI CASTG 2 cut(s) 42, 807
TseFI GTSAC 2 cut(s) 388, 798
TseI GCWGC 4 cut(s) 540, 1104, 1122, 1192
Tsp45I GTSAC 2 cut(s) 388, 798
TspDTI ATGAA 9 cut(s) 69, 117, 166, 365, 732, 740, 1031, 1142, 1268
TspGWI ACGGA 1 cut(s) 1250
TspRI CASTG 2 cut(s) 42, 807
XapI RAATTY 3 cut(s) 352, 739, 1161
XbaI TCTAGA 2 cut(s) 695, 1078
XceI RCATGY 1 cut(s) 527
XcmI CCANNNNNNNNNTGG 1 cut(s) 626
XmiI GTMKAC 1 cut(s) 319
XspI CTAG 4 cut(s) 449, 696, 1079, 1197
ZrmI AGTACT 2 cut(s) 8, 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.