Rmu_sc0018221.1_g000009

Fimbrin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018221.1
OG0013823
Physical Location & Seq
Forward (+)
31572 .. 36103
4532 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018221.1_g000009.1.cds

Sequence Viewer

Length: 1914 bp
atgagcatgaatagggagagcgggaagctcacaatcggggaccttcctgcgaagatgtcgaggctcaaggttgtggggtcagatcatctcacagaggaacagagggcctctgtgattcaagatttgcatcccaagcttgatgatgatgtagatttcgagttcttcctcaaggtttatttgcaactacaatctcatgccactgctacaccaggaagtggtgcaaagagcaactcctcatctgcctttctcaaggctgctaccaccactttgctccacacgattagcgaatccgaaaaggcttcctatgtggcccatatcaataactatcttggagaagatgaattcctaaagagatacctgccgattgatccttccaccaatgatttatttgagattgtaaaagatggagtactcttatgtaagctgatcaatgtggcagtgcctggaacaatcgatgagcgggctatcaatactaaaagagtactcaatccttgggagagaaatgaaaaccatactctctgcctcaactctgctaaggctgttggatgtactgtagtcaatatagggactcaggacttcattgaaggaaggcggcatcttgtacttggagtgatttctcaaattatcaagatacaactattggcagaccttaacttgaagaaaacacctcaattggtggaattggttgacgatagtaaggatgtggaagagttgatgagtctgccgccagagaagatactgctgaggtggatgaatttccaattgaagaaagcacaatataaaaagatagtcacaaacttctcctctgatgtcaaggatgcagaggcttatgctcacctcttaaatgttcttgcacctgagcacagtaaaccatctgcattggctgcaaaaaatactttggaaagagcaaagttagtcctcgaacatgcagataggatgggttgcaagagatatttaactccaaaagatattgttgaaggatccccaaatcttaaccttgcttttgtagcacatgttttccagcacaggaatgggctctcaacccaaaagcagatatcgttcctcgaaacttctcctgatgatgctctaatttccagagaagagagagcatttcgcttctggataaatagtctcggacattcaacatatatcaataatgtctttgaagacctaagaaatgggtgggcccttctagagtccttggacaagatttcaccagggattgtaaattggaaaattgcaaacaagcctccaattaaaatgcctttcagaaaagtagaaaactgtaaccaagttgtaaaaattgggaagcaattgaagttttccttggtaaatgttgctggaaatgatattgtgcaggggaataaaaagttaatacttgcttacttgtggcaattgatgcggttcaacattctccaactcctaaagaacttgagatttcactcacatgggaaagaaatcagtgatgctgatattcttgaatgggccaatactaaagtcagcaacacaggaagccagagctgcatgaaaagtttcaaggataagagtttgtcagatggcattttcttccttgagctgcttagttctgtgcagcctagagtggtgaattggagtcttgttaccaaaggagtaactgatgaggagaaaaagatgaatgccacctacatcatcagtattgcaaggaagcttggatgctcgatatttttgcttcctgaagacataactgaggtgaatcaaaagatgatccttacattgaccgcaagcattatgtactggtttttgaaacaacccactgaagacagaccgtctgcaatttcagacagtgagggttccagccagttagagacaatctccaactctacacttgatgactctgcttctgagtcatcaatggaggagaatggaaacctataa

Protein Analysis

637

Amino Acids

71.46

Weight (kDa)

6.75

Isoelectric Point (pI)

38.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013823)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48460
fragaria_vesca FvH4_2g17780 FvH4_2g17780
malus_domestica MD05G1159000.v1.1 MD10G1151800.v1.1
prunus_persica Prupe.8G190200_v2.0.a1
pyrus_communis pycom05g15090 pycom10g13080
rosa_chinensis RchiOBHm_Chr6g0282801
rosa_laevigata RLG00000012868
rosa_multiflora Rmu_sc0018221.1_g000009
rosa_roxburghii Rroxscaffold_7G00186020
rosa_rugosa Rorug06G0149800
rosa_samantha Rh6AG262800 Rh6CG265000 Rh6DG257500
rosa_wichuraiana Rw6G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 366
AccB7I CCANNNNNTGG 1 cut(s) 215
AccBSI CCGCTC 2 cut(s) 21, 460
AciI CCGC 6 cut(s) 21, 460, 592, 725, 1402, 1758
AclWI GGATC 4 cut(s) 362, 975, 988, 1738
AcsI RAATTY 2 cut(s) 341, 754
AcuI CTGAAG 2 cut(s) 1734, 1815
AfaI GTAC 5 cut(s) 411, 483, 550, 603, 1772
AfiI CCNNNNNNNGG 1 cut(s) 215
AflIII ACRYGT 1 cut(s) 1012
AhdI GACNNNNNGTC 1 cut(s) 1804
AjnI CCWGG 3 cut(s) 208, 442, 1216
AjuI GAANNNNNNNTTGG 2 cut(s) 1310, 1342
AluBI AGCT 6 cut(s) 28, 136, 424, 1521, 1576, 1687
AluI AGCT 6 cut(s) 28, 136, 424, 1521, 1576, 1687
Alw21I GWGCWC 1 cut(s) 864
Alw26I GTCTC 2 cut(s) 1136, 1838
AlwI GGATC 4 cut(s) 362, 975, 988, 1738
AlwNI CAGNNNCTG 1 cut(s) 443
AoxI GGCC 4 cut(s) 105, 309, 1185, 1485
ApaI GGGCCC 1 cut(s) 1189
ApeKI GCWGC 5 cut(s) 254, 884, 1521, 1576, 1591
ApoI RAATTY 2 cut(s) 341, 754
Asp700I GAANNNNTTC 1 cut(s) 1532
AspS9I GGNCC 6 cut(s) 40, 105, 310, 1185, 1186, 1485
AsuHPI GGTGA 4 cut(s) 827, 1206, 1615, 1741
AvaII GGWCC 1 cut(s) 40
BaeGI GKGCMC 1 cut(s) 1189
BamHI GGATCC 1 cut(s) 980
BanII GRGCYC 2 cut(s) 1038, 1189
BbsI GAAGAC 3 cut(s) 1173, 1722, 1803
Bbv12I GWGCWC 1 cut(s) 864
BbvCI CCTCAGC 1 cut(s) 743
BbvI GCAGC 5 cut(s) 241, 871, 1508, 1563, 1603
BccI CCATC 4 cut(s) 398, 880, 931, 1550
BcgI CGANNNNNNTGC 2 cut(s) 1687, 1721
BciT130I CCWGG 3 cut(s) 210, 444, 1218
BclI TGATCA 1 cut(s) 426
BcoDI GTCTC 2 cut(s) 1136, 1838
BfaI CTAG 2 cut(s) 1193, 1596
BfmI CTRYAG 1 cut(s) 552
BfuAI ACCTGC 1 cut(s) 366
BisI GCNGC 7 cut(s) 255, 593, 725, 885, 1522, 1577, 1592
BlsI GCNGC 7 cut(s) 256, 594, 726, 886, 1523, 1578, 1593
BmcAI AGTACT 2 cut(s) 411, 483
Bme1390I CCNGG 3 cut(s) 210, 444, 1218
Bme18I GGWCC 1 cut(s) 40
BmeRI GACNNNNNGTC 1 cut(s) 1804
BmgT120I GGNCC 6 cut(s) 40, 105, 310, 1185, 1186, 1485
BmiI GGNNCC 4 cut(s) 41, 982, 1187, 1831
BmrFI CCNGG 3 cut(s) 210, 444, 1218
BmsI GCATC 7 cut(s) 136, 604, 808, 1072, 1389, 1456, 1682
BpiI GAAGAC 3 cut(s) 1173, 1722, 1803
BplI GAGNNNNNCTC 2 cut(s) 1835, 1867
Bpu10I CCTNAGC 3 cut(s) 534, 743, 858
BpuEI CTTGAG 5 cut(s) 50, 152, 233, 1453, 1592
Bsa29I ATCGAT 1 cut(s) 453
BsaBI GATNNNNATC 1 cut(s) 126
BsaJI CCNNGG 4 cut(s) 491, 1200, 1217, 1326
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse1I ACTGG 2 cut(s) 1778, 1837
Bse8I GATNNNNATC 1 cut(s) 126
BseBI CCWGG 3 cut(s) 210, 444, 1218
BseCI ATCGAT 1 cut(s) 453
BseDI CCNNGG 4 cut(s) 491, 1200, 1217, 1326
BseGI GGATG 7 cut(s) 127, 551, 706, 756, 823, 942, 1697
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 215
BseMII CTCAG 5 cut(s) 584, 734, 849, 1716, 1872
BseNI ACTGG 2 cut(s) 1778, 1837
BseRI GAGGAG 4 cut(s) 223, 793, 1655, 1910
BseSI GKGCMC 1 cut(s) 1189
BseXI GCAGC 5 cut(s) 241, 871, 1508, 1563, 1603
BsgI GTGCAG 2 cut(s) 1376, 1610
BshFI GGCC 4 cut(s) 107, 311, 1187, 1487
BshVI ATCGAT 1 cut(s) 453
BsiHKAI GWGCWC 1 cut(s) 864
BslFI GGGAC 2 cut(s) 53, 580
BslI CCNNNNNNNGG 1 cut(s) 215
BsmAI GTCTC 2 cut(s) 1136, 1838
BsmFI GGGAC 2 cut(s) 53, 580
BsmI GAATGC 1 cut(s) 1660
BsnI GGCC 4 cut(s) 107, 311, 1187, 1487
Bsp120I GGGCCC 1 cut(s) 1185
Bsp1286I GDGCHC 3 cut(s) 864, 1038, 1189
Bsp143I GATC 5 cut(s) 82, 367, 426, 980, 1743
BspACI CCGC 6 cut(s) 21, 460, 592, 725, 1402, 1758
BspANI GGCC 4 cut(s) 107, 311, 1187, 1487
BspCNI CTCAG 5 cut(s) 583, 735, 850, 1717, 1873
BspDI ATCGAT 1 cut(s) 453
BspLI GGNNCC 4 cut(s) 41, 982, 1187, 1831
BspMI ACCTGC 1 cut(s) 366
BspPI GGATC 4 cut(s) 362, 975, 988, 1738
BsrBI CCGCTC 2 cut(s) 21, 460
BsrI ACTGG 2 cut(s) 1778, 1837
BssECI CCNNGG 4 cut(s) 491, 1200, 1217, 1326
BssMI GATC 5 cut(s) 82, 367, 426, 980, 1743
BssT1I CCWWGG 3 cut(s) 491, 1200, 1326
Bst2UI CCWGG 3 cut(s) 210, 444, 1218
Bst4CI ACNGT 5 cut(s) 553, 866, 1286, 1806, 1823
Bst6I CTCTTC 2 cut(s) 702, 1095
BstAPI GCANNNNNTGC 2 cut(s) 884, 1399
BstC8I GCNNGC 2 cut(s) 462, 1762
BstDEI CTNAG 8 cut(s) 534, 570, 743, 858, 1172, 1580, 1725, 1881
BstF5I GGATG 7 cut(s) 127, 551, 706, 756, 823, 942, 1697
BstKTI GATC 5 cut(s) 85, 370, 429, 983, 1746
BstMAI GTCTC 2 cut(s) 1136, 1838
BstMBI GATC 5 cut(s) 82, 367, 426, 980, 1743
BstMWI GCNNNNNNNGC 5 cut(s) 133, 884, 1007, 1399, 1521
BstNI CCWGG 3 cut(s) 210, 444, 1218
BstNSI RCATGY 2 cut(s) 929, 1016
BstSCI CCNGG 3 cut(s) 208, 442, 1216
BstSFI CTRYAG 1 cut(s) 552
BstSLI GKGCMC 1 cut(s) 1189
BstV1I GCAGC 5 cut(s) 241, 871, 1508, 1563, 1603
BstV2I GAAGAC 3 cut(s) 1173, 1722, 1803
BstX2I RGATCY 1 cut(s) 980
BstYI RGATCY 1 cut(s) 980
Bsu15I ATCGAT 1 cut(s) 453
BsuRI GGCC 4 cut(s) 107, 311, 1187, 1487
BsuTUI ATCGAT 1 cut(s) 453
BtsCI GGATG 7 cut(s) 127, 551, 706, 756, 823, 942, 1697
BtsI GCAGTG 2 cut(s) 198, 444
BtsIMutI CAGTG 5 cut(s) 198, 444, 1468, 1791, 1828
BveI ACCTGC 1 cut(s) 366
Cac8I GCNNGC 2 cut(s) 462, 1762
CaiI CAGNNNCTG 1 cut(s) 443
Cfr13I GGNCC 6 cut(s) 40, 105, 310, 1185, 1186, 1485
ClaI ATCGAT 1 cut(s) 453
Csp6I GTAC 5 cut(s) 410, 482, 549, 602, 1771
CviAII CATG 6 cut(s) 7, 194, 926, 1013, 1448, 1525
CviQI GTAC 5 cut(s) 410, 482, 549, 602, 1771
DdeI CTNAG 8 cut(s) 534, 570, 743, 858, 1172, 1580, 1725, 1881
DpnI GATC 5 cut(s) 84, 369, 428, 982, 1745
DpnII GATC 5 cut(s) 82, 367, 426, 980, 1743
DriI GACNNNNNGTC 1 cut(s) 1804
Eam1104I CTCTTC 2 cut(s) 702, 1095
Eam1105I GACNNNNNGTC 1 cut(s) 1804
EarI CTCTTC 2 cut(s) 702, 1095
Eco130I CCWWGG 3 cut(s) 491, 1200, 1326
Eco24I GRGCYC 2 cut(s) 1038, 1189
Eco32I GATATC 1 cut(s) 1056
Eco47I GGWCC 1 cut(s) 40
Eco57I CTGAAG 2 cut(s) 1734, 1815
EcoO109I RGGNCCY 3 cut(s) 40, 105, 1186
EcoRI GAATTC 1 cut(s) 341
EcoRII CCWGG 3 cut(s) 208, 442, 1216
EcoRV GATATC 1 cut(s) 1056
EcoT14I CCWWGG 3 cut(s) 491, 1200, 1326
EcoT38I GRGCYC 2 cut(s) 1038, 1189
ErhI CCWWGG 3 cut(s) 491, 1200, 1326
FaeI CATG 6 cut(s) 10, 197, 929, 1016, 1451, 1528
FalI AAGNNNNNCTT 2 cut(s) 1310, 1342
FaqI GGGAC 2 cut(s) 53, 580
FatI CATG 6 cut(s) 6, 193, 925, 1012, 1447, 1524
FauI CCCGC 2 cut(s) 14, 453
FbaI TGATCA 1 cut(s) 426
Fnu4HI GCNGC 7 cut(s) 255, 593, 725, 885, 1522, 1577, 1592
FokI GGATG 7 cut(s) 114, 558, 713, 763, 830, 949, 1704
FriOI GRGCYC 2 cut(s) 1038, 1189
Fsp4HI GCNGC 7 cut(s) 255, 593, 725, 885, 1522, 1577, 1592
FspBI CTAG 2 cut(s) 1193, 1596
GluI GCNGC 7 cut(s) 255, 593, 725, 885, 1522, 1577, 1592
HaeIII GGCC 4 cut(s) 107, 311, 1187, 1487
Hin1II CATG 6 cut(s) 10, 197, 929, 1016, 1451, 1528
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HindIII AAGCTT 2 cut(s) 134, 1685
HinfI GANTC 9 cut(s) 115, 287, 568, 718, 1196, 1612, 1732, 1871, 1883
HphI GGTGA 4 cut(s) 827, 1206, 1615, 1741
Hpy166II GTNNAC 2 cut(s) 688, 869
Hpy188I TCNGA 8 cut(s) 82, 292, 808, 1136, 1271, 1555, 1819, 1882
Hpy188III TCNNGA 9 cut(s) 119, 572, 628, 1076, 1095, 1120, 1193, 1478, 1712
Hpy8I GTNNAC 2 cut(s) 688, 869
HpyAV CCTTC 6 cut(s) 53, 381, 578, 582, 971, 1199
HpyCH4III ACNGT 5 cut(s) 553, 866, 1286, 1806, 1823
HpyF10VI GCNNNNNNNGC 5 cut(s) 133, 884, 1007, 1399, 1521
HpyF3I CTNAG 8 cut(s) 534, 570, 743, 858, 1172, 1580, 1725, 1881
Hsp92II CATG 6 cut(s) 10, 197, 929, 1016, 1451, 1528
Ksp22I TGATCA 1 cut(s) 426
Kzo9I GATC 5 cut(s) 82, 367, 426, 980, 1743
LmnI GCTCC 1 cut(s) 276
Lsp1109I GCAGC 5 cut(s) 241, 871, 1508, 1563, 1603
LweI GCATC 7 cut(s) 136, 604, 808, 1072, 1389, 1456, 1682
MaeI CTAG 2 cut(s) 1193, 1596
MaeIII GTNAC 4 cut(s) 790, 1286, 1618, 1630
MalI GATC 5 cut(s) 84, 369, 428, 982, 1745
MbiI CCGCTC 2 cut(s) 21, 460
MboI GATC 5 cut(s) 82, 367, 426, 980, 1743
MfeI CAATTG 4 cut(s) 671, 761, 1313, 1394
MflI RGATCY 1 cut(s) 980
MhlI GDGCHC 3 cut(s) 864, 1038, 1189
MlyI GAGTC 6 cut(s) 562, 727, 1205, 1621, 1865, 1892
MmeI TCCRAC 3 cut(s) 523, 1441, 1878
MroXI GAANNNNTTC 1 cut(s) 1532
MseI TTAA 6 cut(s) 651, 842, 956, 993, 1257, 1373
MslI CAYNNNNRTG 2 cut(s) 1029, 1446
MspR9I CCNGG 3 cut(s) 210, 444, 1218
MunI CAATTG 4 cut(s) 671, 761, 1313, 1394
Mva1269I GAATGC 1 cut(s) 1660
MvaI CCWGG 3 cut(s) 210, 444, 1218
MwoI GCNNNNNNNGC 5 cut(s) 133, 884, 1007, 1399, 1521
NdeII GATC 5 cut(s) 82, 367, 426, 980, 1743
NlaIII CATG 6 cut(s) 10, 197, 929, 1016, 1451, 1528
NlaIV GGNNCC 4 cut(s) 41, 982, 1187, 1831
NmuCI GTSAC 1 cut(s) 790
NspI RCATGY 2 cut(s) 929, 1016
PciI ACATGT 1 cut(s) 1012
PctI GAATGC 1 cut(s) 1660
PdmI GAANNNNTTC 1 cut(s) 1532
PfeI GAWTC 3 cut(s) 115, 287, 1732
PflMI CCANNNNNTGG 1 cut(s) 215
PkrI GCNGC 7 cut(s) 256, 594, 726, 886, 1523, 1578, 1593
PleI GAGTC 6 cut(s) 562, 726, 1204, 1620, 1865, 1891
PpsI GAGTC 6 cut(s) 562, 726, 1204, 1620, 1865, 1891
PpuMI RGGWCCY 1 cut(s) 40
PscI ACATGT 1 cut(s) 1012
Psp5II RGGWCCY 1 cut(s) 40
Psp6I CCWGG 3 cut(s) 208, 442, 1216
PspGI CCWGG 3 cut(s) 208, 442, 1216
PspN4I GGNNCC 4 cut(s) 41, 982, 1187, 1831
PspOMI GGGCCC 1 cut(s) 1185
PspPI GGNCC 6 cut(s) 40, 105, 310, 1185, 1186, 1485
PspPPI RGGWCCY 1 cut(s) 40
PstNI CAGNNNCTG 1 cut(s) 443
PsuI RGATCY 1 cut(s) 980
RsaI GTAC 5 cut(s) 411, 483, 550, 603, 1772
RsaNI GTAC 5 cut(s) 410, 482, 549, 602, 1771
RseI CAYNNNNRTG 2 cut(s) 1029, 1446
SaqAI TTAA 6 cut(s) 651, 842, 956, 993, 1257, 1373
SatI GCNGC 7 cut(s) 255, 593, 725, 885, 1522, 1577, 1592
Sau3AI GATC 5 cut(s) 82, 367, 426, 980, 1743
Sau96I GGNCC 6 cut(s) 40, 105, 310, 1185, 1186, 1485
ScaI AGTACT 2 cut(s) 411, 483
SchI GAGTC 6 cut(s) 562, 727, 1205, 1621, 1865, 1892
ScrFI CCNGG 3 cut(s) 210, 444, 1218
SduI GDGCHC 3 cut(s) 864, 1038, 1189
SfaNI GCATC 7 cut(s) 136, 604, 808, 1072, 1389, 1456, 1682
SfcI CTRYAG 1 cut(s) 552
SinI GGWCC 1 cut(s) 40
SmiMI CAYNNNNRTG 2 cut(s) 1029, 1446
SmlI CTYRAG 5 cut(s) 65, 167, 248, 1432, 1571
SmoI CTYRAG 5 cut(s) 65, 167, 248, 1432, 1571
SsiI CCGC 6 cut(s) 21, 460, 592, 725, 1402, 1758
SspMI CTAG 2 cut(s) 1193, 1596
StyD4I CCNGG 3 cut(s) 208, 442, 1216
StyI CCWWGG 3 cut(s) 491, 1200, 1326
TaaI ACNGT 5 cut(s) 553, 866, 1286, 1806, 1823
TaqI TCGA 6 cut(s) 59, 156, 453, 921, 1065, 1697
TatI WGTACW 5 cut(s) 409, 481, 548, 601, 1770
TauI GCSGC 2 cut(s) 595, 727
TfiI GAWTC 3 cut(s) 115, 287, 1732
Tru1I TTAA 6 cut(s) 651, 842, 956, 993, 1257, 1373
Tru9I TTAA 6 cut(s) 651, 842, 956, 993, 1257, 1373
TscAI CASTG 5 cut(s) 205, 444, 1468, 1798, 1828
TseFI GTSAC 1 cut(s) 790
TseI GCWGC 5 cut(s) 254, 884, 1521, 1576, 1591
Tsp45I GTSAC 1 cut(s) 790
TspDTI ATGAA 7 cut(s) 23, 354, 519, 568, 767, 1541, 1667
TspRI CASTG 5 cut(s) 205, 444, 1468, 1798, 1828
Van91I CCANNNNNTGG 1 cut(s) 215
VpaK11BI GGWCC 1 cut(s) 40
XapI RAATTY 2 cut(s) 341, 754
XbaI TCTAGA 1 cut(s) 1192
XceI RCATGY 2 cut(s) 929, 1016
XcmI CCANNNNNNNNNTGG 1 cut(s) 1028
XmnI GAANNNNTTC 1 cut(s) 1532
XspI CTAG 2 cut(s) 1193, 1596
ZrmI AGTACT 2 cut(s) 411, 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.