Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0013522

Physical Location & Seq

Genomic Coordinates Reverse (-)

21488325 .. 21492803

Gene Structure 4479 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2622 bp

ATGATGTTCCGTAGGTTGAAGGGTGTGACATCTCTTGGCATTTTGAAGTGGAAAGGCGATTCATCCTTGACATCAGGGTTGCTTAGGGATGTGGGTCCTGAGGTTGAATTATCTGACTATGGTAGGGCACCGAGTCCTGGTAGTGAGAGCCCTTCAGGGCTTCTTAATGGTGAGAGTATAAATGTTGAACCAATTGCTGATTTGGACCTGTTCTTTGAAAGGCTCTACAGCTACTACTGTGAGAAAGGACTTTGGTGTATTATTATAAAGTGGATAGTTGAACTTCTGAGCTTGGGCTTCACTATATTGTTCTCAGGATTCTTCTTATTAAAAGTTGATTGGAATGGTCTTCGTAATGCAAAATGTGGGATGGATGCATTCGAATCTGGAATTAAGCCCTGTGACCTTGCTAAGGAAGCCCTTCATCAGCACCCATTAACGCCTCTAACTCTTTCCAAAGCCATCATTGTTGGATATTTGGGCATATTTTCCATTTATTTGGTCTTCTGTTTTTTGCGGTTTTTCTCGCAGTTAAGGGATACTTTGGCAGTCCGTCACTTCTATCACAACAGTCTCCATGTCACAGACAATGAAATTCAGACCATGCCATGGGCATCAATTCTTGAAAAGGTTGTTCAGTTACAAAGATCACAGCGGCTCTGTGTGGTCAAAGATCTTTCTGCTCATGATGTGGTTATGCGATTGATGCGGAAGGAGAACTACTTGATTGGAATGCTTAACAAGGGGGTGCTTGCTTTCCCAATTTCACAGTGGGTTCCAGGTGCTGGTCCAATTGTAAAGTTTGGCACTGATGGAAAGCAAGGACGATTAATACTGACAAAAACCCTCGAGTGGACCTTAAATTGGTGCATTCTGCAGAGCATGTTTGATCGAAATTTCTGCGTTACAAGGGACTTTAAATCTAATCCAAGAACATTAAAGAAAAGGCTTATGGTAGTTGGATTCGTAATGCTTCTCCTTTCCCCATTTCTTGTAATATTCATGCTGGTATATCTCTTCCTGAGGCATGCAGAACAGTTTTATAACCATCCAAGCACGGCATCATCTCGAAGGTGGTCAAATTTGTCAAGGTGGATGTTTAGGGAATTTAATGAGGTGGACCATTTGTTTAAACACCGAGTCACGAGCAGTGTAGTGCATGCTTCTGATTATCTGAAGCAATTTCCTTGTCCTATTATATCCATAATAGCGAAATTCATCTCTTTTGTTTCTGGTGGCTTTGCTGCTATCCTAATCATCATCGCATTTCTGGAGGAATCTCTGCTAGAGGGCCATATATTTGGACGCAACTTGTTCTGGTATGCTGCTGTTTTTGGAACTATAACAGCTATTAGCAGGGCTGCCATTACCGATGAACTGCTGGTCCTTGATCCATACGGTGCAATGTCTATGGTGGTACAATATACACATTATATGCCGAAGACATGGCGTGGCAAAGAGAATACTGAAAGGGTTCGGGTAGAGTTTGAAACCCTGTTTCATTATACTGGAATGATGTTACTTGAGGAGATGGCCTCAATCTTCCTTACTCCATATTTACTTATATTTGTTGTTCCGAAGAGGGTGGATGACATTTTACAGTTTATTGAAGACTTCACAGTAGATGTTGAGGGTGTTGGTCATGTGTGTAGTTTTAGTGCCTTCGATTTTCAAAGGCACGGTAATAGCAATTACGGGTCACTTTACAATGTACCTCGCTCCCAGAGGAGTTCTCAGGGGAAAATGGAGAAATCGTTTTTGAGCTTCAAGAGTAACTATCCATTGTGGGACCCAAATACTGAAGGTGATCAGTTTCTTAAAAAGCTGAGAACTTTCAGAGAGCAAAAGTTGCAGGGACAAGGAACTCGACATGCATATTCTCCTCCGAGAGGATTTGGTGACCGGAACAATCTTTTATCACGGGAAAGGCCATATCATAGCCCTGGAACTGGCTATCACTTGGGGTCTCTGTGGTTAATTGACGCAGATCTAAAGAATCACCCATATCTCCTTGATTGGTATTACACCTCTCGGCCACACCGTACGGCAAGTTATGCTGGTGAAATTCCAGAAGAACCATTTGAAGCTACTGAGCAACATTCTACTGATTGGACCCCAACCAACTTTCTACATAATCAACTGAGATTTGAAGATCTCTGGGCTCATCGTTATGATGACCGTTCACAGTCTAATATGGGGGCTTCTACGTCAGCGCCTTTCGACCGAGAGAGTGTACTTCAGCATCATGACGCTGGTACTTCCGCAAATCCAATGCGGAGTCATTGGTGGGCTAGAACCGGCCAACACGGAACACAGCCCCAGTCAAGTTTTCTCGAGCCTCCAGATTTCACCCAACACGGGAAACCGCCCCAGTCAAGCTTTCTCGATCCTCCAAACTTCATGCGCCAGCCTTCAGATAATTTTTACGGAAGCTTCGAGGAACACGAACAAGAAGAAGAACCGGAACAAGAACAAGAACAACGGTTGGACTGGAGGAACTACCAAGGCTTGTCCCGAACGACGTACGTGGGTGACCTAGACTTAGAGGCAGGAGAGTGTAATCTTCATTTCGGTGACGTGTACAGTAGTGGACCTCCTGAAACTCCGAAAATAAAGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005776 GO:0006914 GO:0006950 GO:0006952 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016043 GO:0016236 GO:0022411 GO:0022607 GO:0033036 GO:0034497 GO:0034613 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0044805 GO:0050832 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071840 GO:0098542 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04137 ko04138 ko04140 map04136 map04137 map04138 map04140

Pfam Domains

Protein Families

APG9

Protein Analysis

874

Amino Acids

100.44

Weight (kDa)

6.47

Isoelectric Point (pI)

43.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATG9	PF04109	62 - 556	7.4e-162	Autophagy protein ATG9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31260
fragaria_vesca	FvH4_2g21710
malus_domestica	MD05G1199600.v1.1 MD10G1185900.v1.1
prunus_persica	Prupe.8G225400_v2.0.a1 Prupe.8G225400_v2.0.a1
pyrus_communis	pycom05g18600 pycom10g16080
rosa_chinensis	RchiOBHm_Chr6g0288391
rosa_laevigata	RLG00000012408
rosa_multiflora	Rmu_sc0001038.1_g000011
rosa_roxburghii	Rroxscaffold_7G00180100
rosa_rugosa	Rorug06G0196200
rosa_samantha	Rh6AG307100 Rh6BG313100 Rh6CG320900 Rh6DG306300
rosa_wichuraiana	Rw6G026570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	266, 1044
AccB1I	GGYRCC	1 cut(s)	127
AccB7I	CCANNNNNTGG	2 cut(s)	609, 785
AciI	CCGC	6 cut(s)	517, 655, 709, 2262, 2275, 2366
AclWI	GGATC	2 cut(s)	1385, 2381
AcoI	YGGCCR	2 cut(s)	2033, 2299
AcsI	RAATTY	6 cut(s)	594, 895, 1081, 1106, 1214, 2064
AcuI	CTGAAG	5 cut(s)	138, 1196, 1821, 2222, 2397
AfaI	GTAC	7 cut(s)	1419, 1713, 2044, 2235, 2257, 2525, 2582
AfiI	CCNNNNNNNGG	9 cut(s)	137, 412, 609, 785, 852, 864, 1889, 1949, 2358
AflIII	ACRYGT	1 cut(s)	2577
AjiI	CACGTC	1 cut(s)	2578
AjnI	CCWGG	3 cut(s)	136, 778, 1942
AloI	GAACNNNNNNTCC	2 cut(s)	1368, 1400
AluBI	AGCT	8 cut(s)	231, 291, 1349, 1764, 1825, 2087, 2379, 2433
AluI	AGCT	8 cut(s)	231, 291, 1349, 1764, 1825, 2087, 2379, 2433
Alw26I	GTCTC	2 cut(s)	578, 1971
AlwI	GGATC	2 cut(s)	1385, 2381
AlwNI	CAGNNNCTG	1 cut(s)	785
Ama87I	CYCGRG	2 cut(s)	848, 2333
AoxI	GGCC	5 cut(s)	1291, 1533, 1928, 2033, 2299
ApeKI	GCWGC	3 cut(s)	1244, 1325, 1361
ApoI	RAATTY	6 cut(s)	594, 895, 1081, 1106, 1214, 2064
ArsI	GACNNNNNNTTYG	2 cut(s)	197, 229
AseI	ATTAAT	1 cut(s)	830
Asp700I	GAANNNNTTC	2 cut(s)	420, 1473
AspLEI	GCGC	2 cut(s)	2215, 2406
AsuHPI	GGTGA	8 cut(s)	182, 1817, 1910, 1991, 2072, 2341, 2543, 2585
AsuII	TTCGAA	1 cut(s)	381
AvaI	CYCGRG	2 cut(s)	848, 2333
AvaII	GGWCC	9 cut(s)	95, 205, 788, 855, 1120, 1384, 1789, 2112, 2591
AxyI	CCTNAGG	2 cut(s)	99, 1022
BaeGI	GKGCMC	1 cut(s)	130
BanI	GGYRCC	1 cut(s)	127
BanII	GRGCYC	2 cut(s)	152, 2164
BarI	GAAGNNNNNNTAC	2 cut(s)	704, 736
BauI	CACGAG	1 cut(s)	1144
BbsI	GAAGAC	4 cut(s)	341, 496, 1448, 1617
BbvI	GCAGC	3 cut(s)	1231, 1312, 1348
BccI	CCATC	5 cut(s)	364, 470, 806, 1056, 1525
BceAI	ACGGC	2 cut(s)	1074, 2061
BcgI	CGANNNNNNTGC	2 cut(s)	882, 916
BciT130I	CCWGG	3 cut(s)	138, 780, 1944
BciVI	GTATCC	1 cut(s)	532
BclI	TGATCA	1 cut(s)	1807
BcoDI	GTCTC	2 cut(s)	578, 1971
BfaI	CTAG	3 cut(s)	1286, 2292, 2537
BfmI	CTRYAG	2 cut(s)	226, 875
BfoI	RGCGCY	1 cut(s)	2216
BfuI	GTATCC	1 cut(s)	532
BglII	AGATCT	3 cut(s)	673, 1987, 2152
BisI	GCNGC	4 cut(s)	656, 1245, 1326, 1362
BlsI	GCNGC	4 cut(s)	657, 1246, 1327, 1363
Bme1390I	CCNGG	3 cut(s)	138, 780, 1944
Bme18I	GGWCC	9 cut(s)	95, 205, 788, 855, 1120, 1384, 1789, 2112, 2591
BmeT110I	CYCGRG	2 cut(s)	848, 2333
BmgBI	CACGTC	1 cut(s)	2578
BmiI	GGNNCC	6 cut(s)	96, 129, 777, 1790, 1791, 2114
BmrFI	CCNGG	3 cut(s)	138, 780, 1944
BmrI	ACTGGG	2 cut(s)	2314, 2365
BmsI	GCATC	5 cut(s)	364, 623, 696, 1070, 2251
BmuI	ACTGGG	2 cut(s)	2314, 2365
BpiI	GAAGAC	4 cut(s)	341, 496, 1448, 1617
BplI	GAGNNNNNCTC	4 cut(s)	1520, 1552, 1717, 1749
BpmI	CTGGAG	3 cut(s)	1292, 2325, 2512
Bpu10I	CCTNAGC	2 cut(s)	83, 411
Bpu14I	TTCGAA	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	1544
BsaAI	YACGTR	1 cut(s)	2527
BsaI	GGTCTC	1 cut(s)	1971
BsaJI	CCNNGG	3 cut(s)	608, 1942, 2503
BsaWI	WCCGGW	2 cut(s)	1902, 2461
BsaXI	ACNNNNNCTCC	2 cut(s)	1739, 1769
Bsc4I	CCNNNNNNNGG	9 cut(s)	137, 412, 609, 785, 852, 864, 1889, 1949, 2358
Bse118I	RCCGGY	1 cut(s)	2297
Bse1I	ACTGG	5 cut(s)	1513, 1954, 2320, 2371, 2495
Bse21I	CCTNAGG	2 cut(s)	99, 1022
Bse3DI	GCAATG	1 cut(s)	1410
BseBI	CCWGG	3 cut(s)	138, 780, 1944
BseDI	CCNNGG	3 cut(s)	608, 1942, 2503
BseGI	GGATG	7 cut(s)	62, 94, 375, 379, 1048, 1101, 1594
BseLI	CCNNNNNNNGG	9 cut(s)	137, 412, 609, 785, 852, 864, 1889, 1949, 2358
BseMI	GCAATG	1 cut(s)	1410
BseMII	CTCAG	8 cut(s)	90, 278, 327, 1013, 1748, 1817, 2082, 2132
BseNI	ACTGG	5 cut(s)	1513, 1954, 2320, 2371, 2495
BseRI	GAGGAG	3 cut(s)	1541, 1741, 1872
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	3 cut(s)	1231, 1312, 1348
Bsh1285I	CGRYCG	1 cut(s)	2224
BshFI	GGCC	5 cut(s)	1293, 1535, 1930, 2035, 2301
BshNI	GGYRCC	1 cut(s)	127
BsiEI	CGRYCG	1 cut(s)	2224
BsiHKCI	CYCGRG	2 cut(s)	848, 2333
BsiSI	CCGG	3 cut(s)	1903, 2298, 2462
BsiWI	CGTACG	2 cut(s)	2042, 2523
BslFI	GGGAC	4 cut(s)	926, 1802, 1869, 2497
BslI	CCNNNNNNNGG	9 cut(s)	137, 412, 609, 785, 852, 864, 1889, 1949, 2358
BsmAI	GTCTC	2 cut(s)	578, 1971
BsmFI	GGGAC	4 cut(s)	926, 1802, 1869, 2497
BsmI	GAATGC	3 cut(s)	377, 738, 870
BsnI	GGCC	5 cut(s)	1293, 1535, 1930, 2035, 2301
Bso31I	GGTCTC	1 cut(s)	1971
BsoBI	CYCGRG	2 cut(s)	848, 2333
Bsp119I	TTCGAA	1 cut(s)	381
Bsp1286I	GDGCHC	3 cut(s)	130, 152, 2164
Bsp1407I	TGTACA	1 cut(s)	2580
Bsp143I	GATC	8 cut(s)	647, 673, 889, 1390, 1807, 1987, 2152, 2386
Bsp19I	CCATGG	1 cut(s)	608
BspACI	CCGC	6 cut(s)	517, 655, 709, 2262, 2275, 2366
BspANI	GGCC	5 cut(s)	1293, 1535, 1930, 2035, 2301
BspCNI	CTCAG	8 cut(s)	91, 279, 326, 1014, 1747, 1818, 2083, 2133
BspHI	TCATGA	2 cut(s)	685, 2245
BspLI	GGNNCC	6 cut(s)	96, 129, 777, 1790, 1791, 2114
BspMAI	CTGCAG	1 cut(s)	879
BspPI	GGATC	2 cut(s)	1385, 2381
BspT104I	TTCGAA	1 cut(s)	381
BspT107I	GGYRCC	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	1971
BsrDI	GCAATG	1 cut(s)	1410
BsrFI	RCCGGY	1 cut(s)	2297
BsrGI	TGTACA	1 cut(s)	2580
BsrI	ACTGG	5 cut(s)	1513, 1954, 2320, 2371, 2495
BssAI	RCCGGY	1 cut(s)	2297
BssECI	CCNNGG	3 cut(s)	608, 1942, 2503
BssMI	GATC	8 cut(s)	647, 673, 889, 1390, 1807, 1987, 2152, 2386
BssSI	CACGAG	1 cut(s)	1144
BssT1I	CCWWGG	2 cut(s)	608, 2503
Bst2BI	CACGAG	1 cut(s)	1144
Bst2UI	CCWGG	3 cut(s)	138, 780, 1944
Bst6I	CTCTTC	2 cut(s)	1022, 1574
BstAPI	GCANNNNNTGC	2 cut(s)	1849, 2054
BstAUI	TGTACA	1 cut(s)	2580
BstBAI	YACGTR	1 cut(s)	2527
BstBI	TTCGAA	1 cut(s)	381
BstC8I	GCNNGC	4 cut(s)	753, 1029, 1161, 2408
BstDSI	CCRYGG	1 cut(s)	608
BstEII	GGTNACC	2 cut(s)	1898, 2531
BstENI	CCTNNNNNAGG	2 cut(s)	410, 1887
BstF5I	GGATG	7 cut(s)	62, 94, 375, 379, 1048, 1101, 1594
BstH2I	RGCGCY	1 cut(s)	2216
BstHHI	GCGC	2 cut(s)	2215, 2406
BstKTI	GATC	8 cut(s)	650, 676, 892, 1393, 1810, 1990, 2155, 2389
BstMAI	GTCTC	2 cut(s)	578, 1971
BstMBI	GATC	8 cut(s)	647, 673, 889, 1390, 1807, 1987, 2152, 2386
BstMCI	CGRYCG	1 cut(s)	2224
BstMWI	GCNNNNNNNGC	4 cut(s)	416, 706, 1849, 2054
BstNI	CCWGG	3 cut(s)	138, 780, 1944
BstNSI	RCATGY	4 cut(s)	886, 1031, 1163, 1874
BstPI	GGTNACC	2 cut(s)	1898, 2531
BstSCI	CCNGG	3 cut(s)	136, 778, 1942
BstSFI	CTRYAG	2 cut(s)	226, 875
BstSLI	GKGCMC	1 cut(s)	130
BstV1I	GCAGC	3 cut(s)	1231, 1312, 1348
BstV2I	GAAGAC	4 cut(s)	341, 496, 1448, 1617
BstX2I	RGATCY	3 cut(s)	673, 1987, 2152
BstXI	CCANNNNNNTGG	2 cut(s)	499, 1301
BstYI	RGATCY	3 cut(s)	673, 1987, 2152
Bsu36I	CCTNAGG	2 cut(s)	99, 1022
BsuI	GTATCC	1 cut(s)	532
BsuRI	GGCC	5 cut(s)	1293, 1535, 1930, 2035, 2301
BtgI	CCRYGG	1 cut(s)	608
BtgZI	GCGATG	1 cut(s)	1246
BtrI	CACGTC	1 cut(s)	2578
BtsCI	GGATG	7 cut(s)	62, 94, 375, 379, 1048, 1101, 1594
BtsI	GCAGTG	1 cut(s)	1156
BtsIMutI	CAGTG	3 cut(s)	776, 807, 1156
Cac8I	GCNNGC	4 cut(s)	753, 1029, 1161, 2408
CaiI	CAGNNNCTG	1 cut(s)	785
CciI	TCATGA	2 cut(s)	685, 2245
CfoI	GCGC	2 cut(s)	2215, 2406
Cfr10I	RCCGGY	1 cut(s)	2297
CseI	GACGC	3 cut(s)	1314, 1991, 2258
Csp6I	GTAC	7 cut(s)	1418, 1712, 2043, 2234, 2256, 2524, 2581
CviQI	GTAC	7 cut(s)	1418, 1712, 2043, 2234, 2256, 2524, 2581
DpnI	GATC	8 cut(s)	649, 675, 891, 1392, 1809, 1989, 2154, 2388
DpnII	GATC	8 cut(s)	647, 673, 889, 1390, 1807, 1987, 2152, 2386
DraI	TTTAAA	2 cut(s)	919, 1132
EaeI	YGGCCR	2 cut(s)	2033, 2299
Eam1104I	CTCTTC	2 cut(s)	1022, 1574
EarI	CTCTTC	2 cut(s)	1022, 1574
Eco130I	CCWWGG	2 cut(s)	608, 2503
Eco24I	GRGCYC	2 cut(s)	152, 2164
Eco31I	GGTCTC	1 cut(s)	1971
Eco47I	GGWCC	9 cut(s)	95, 205, 788, 855, 1120, 1384, 1789, 2112, 2591
Eco57I	CTGAAG	5 cut(s)	138, 1196, 1821, 2222, 2397
Eco81I	CCTNAGG	2 cut(s)	99, 1022
Eco88I	CYCGRG	2 cut(s)	848, 2333
Eco91I	GGTNACC	2 cut(s)	1898, 2531
EcoNI	CCTNNNNNAGG	2 cut(s)	410, 1887
EcoO109I	RGGNCCY	2 cut(s)	95, 1789
EcoO65I	GGTNACC	2 cut(s)	1898, 2531
EcoRII	CCWGG	3 cut(s)	136, 778, 1942
EcoT14I	CCWWGG	2 cut(s)	608, 2503
EcoT22I	ATGCAT	2 cut(s)	379, 1876
EcoT38I	GRGCYC	2 cut(s)	152, 2164
ErhI	CCWWGG	2 cut(s)	608, 2503
FalI	AAGNNNNNCTT	2 cut(s)	526, 558
FaqI	GGGAC	4 cut(s)	926, 1802, 1869, 2497
FbaI	TGATCA	1 cut(s)	1807
Fnu4HI	GCNGC	4 cut(s)	656, 1245, 1326, 1362
FokI	GGATG	7 cut(s)	49, 101, 382, 386, 1035, 1108, 1601
FriOI	GRGCYC	2 cut(s)	152, 2164
Fsp4HI	GCNGC	4 cut(s)	656, 1245, 1326, 1362
FspBI	CTAG	3 cut(s)	1286, 2292, 2537
GlaI	GCGC	2 cut(s)	2214, 2405
GluI	GCNGC	4 cut(s)	656, 1245, 1326, 1362
GsuI	CTGGAG	3 cut(s)	1292, 2325, 2512
HaeII	RGCGCY	1 cut(s)	2216
HaeIII	GGCC	5 cut(s)	1293, 1535, 1930, 2035, 2301
HapII	CCGG	3 cut(s)	1903, 2298, 2462
HgaI	GACGC	3 cut(s)	1314, 1991, 2258
HhaI	GCGC	2 cut(s)	2215, 2406
Hin6I	GCGC	2 cut(s)	2213, 2404
HinP1I	GCGC	2 cut(s)	2213, 2404
HindIII	AAGCTT	2 cut(s)	2377, 2431
HinfI	GANTC	9 cut(s)	59, 133, 318, 383, 963, 1140, 1277, 1996, 2278
HpaII	CCGG	3 cut(s)	1903, 2298, 2462
HphI	GGTGA	8 cut(s)	182, 1817, 1910, 1991, 2072, 2341, 2543, 2585
Hpy166II	GTNNAC	6 cut(s)	855, 1120, 2183, 2234, 2581, 2591
Hpy8I	GTNNAC	6 cut(s)	855, 1120, 2183, 2234, 2581, 2591
Hpy99I	CGWCG	1 cut(s)	2524
HpyAV	CCTTC	8 cut(s)	13, 162, 431, 706, 1065, 1672, 1796, 2421
HpyCH4IV	ACGT	4 cut(s)	2207, 2522, 2526, 2577
HpyCH4V	TGCA	9 cut(s)	359, 377, 870, 877, 1031, 1159, 1403, 1852, 1874
HpyF10VI	GCNNNNNNNGC	4 cut(s)	416, 706, 1849, 2054
HpySE526I	ACGT	4 cut(s)	2207, 2522, 2526, 2577
HspAI	GCGC	2 cut(s)	2213, 2404
KflI	GGGWCCC	1 cut(s)	1789
Ksp22I	TGATCA	1 cut(s)	1807
Kzo9I	GATC	8 cut(s)	647, 673, 889, 1390, 1807, 1987, 2152, 2386
LmnI	GCTCC	1 cut(s)	1724
Lsp1109I	GCAGC	3 cut(s)	1231, 1312, 1348
LweI	GCATC	5 cut(s)	364, 623, 696, 1070, 2251
MaeI	CTAG	3 cut(s)	1286, 2292, 2537
MaeII	ACGT	4 cut(s)	2207, 2522, 2526, 2577
MalI	GATC	8 cut(s)	649, 675, 891, 1392, 1809, 1989, 2154, 2388
MboI	GATC	8 cut(s)	647, 673, 889, 1390, 1807, 1987, 2152, 2386
MfeI	CAATTG	2 cut(s)	192, 792
MflI	RGATCY	3 cut(s)	673, 1987, 2152
MhlI	GDGCHC	3 cut(s)	130, 152, 2164
MlyI	GAGTC	3 cut(s)	142, 1149, 2287
MmeI	TCCRAC	3 cut(s)	451, 940, 2466
Mph1103I	ATGCAT	2 cut(s)	379, 1876
MroXI	GAANNNNTTC	2 cut(s)	420, 1473
MslI	CAYNNNNRTG	2 cut(s)	2169, 2571
MspA1I	CMGCKG	1 cut(s)	655
MspI	CCGG	3 cut(s)	1903, 2298, 2462
MspR9I	CCNGG	3 cut(s)	138, 780, 1944
MssI	GTTTAAAC	1 cut(s)	1132
MunI	CAATTG	2 cut(s)	192, 792
Mva1269I	GAATGC	3 cut(s)	377, 738, 870
MvaI	CCWGG	3 cut(s)	138, 780, 1944
MwoI	GCNNNNNNNGC	4 cut(s)	416, 706, 1849, 2054
NcoI	CCATGG	1 cut(s)	608
NdeII	GATC	8 cut(s)	647, 673, 889, 1390, 1807, 1987, 2152, 2386
NlaIV	GGNNCC	6 cut(s)	96, 129, 777, 1790, 1791, 2114
NmeAIII	GCCGAG	1 cut(s)	2011
NmuCI	GTSAC	9 cut(s)	25, 401, 554, 580, 1141, 1698, 1898, 2531, 2573
NsiI	ATGCAT	2 cut(s)	379, 1876
NspI	RCATGY	4 cut(s)	886, 1031, 1163, 1874
NspV	TTCGAA	1 cut(s)	381
PaeI	GCATGC	2 cut(s)	1031, 1163
PaeR7I	CTCGAG	2 cut(s)	848, 2333
PagI	TCATGA	2 cut(s)	685, 2245
PcsI	WCGNNNNNNNCGW	3 cut(s)	2038, 2433, 2442
PctI	GAATGC	3 cut(s)	377, 738, 870
PdmI	GAANNNNTTC	2 cut(s)	420, 1473
PfeI	GAWTC	6 cut(s)	59, 318, 383, 963, 1277, 1996
Pfl23II	CGTACG	2 cut(s)	2042, 2523
PflMI	CCANNNNNTGG	2 cut(s)	609, 785
PkrI	GCNGC	4 cut(s)	657, 1246, 1327, 1363
PleI	GAGTC	3 cut(s)	141, 1148, 2286
PmeI	GTTTAAAC	1 cut(s)	1132
PpsI	GAGTC	3 cut(s)	141, 1148, 2286
Ppu21I	YACGTR	1 cut(s)	2527
PpuMI	RGGWCCY	2 cut(s)	95, 1789
PshBI	ATTAAT	1 cut(s)	830
PsiI	TTATAA	2 cut(s)	266, 1044
Psp5II	RGGWCCY	2 cut(s)	95, 1789
Psp6I	CCWGG	3 cut(s)	136, 778, 1942
PspEI	GGTNACC	2 cut(s)	1898, 2531
PspGI	CCWGG	3 cut(s)	136, 778, 1942
PspLI	CGTACG	2 cut(s)	2042, 2523
PspN4I	GGNNCC	6 cut(s)	96, 129, 777, 1790, 1791, 2114
PspPPI	RGGWCCY	2 cut(s)	95, 1789
PspXI	VCTCGAGB	1 cut(s)	848
PstI	CTGCAG	1 cut(s)	879
PstNI	CAGNNNCTG	1 cut(s)	785
PsuI	RGATCY	3 cut(s)	673, 1987, 2152
RsaI	GTAC	7 cut(s)	1419, 1713, 2044, 2235, 2257, 2525, 2582
RsaNI	GTAC	7 cut(s)	1418, 1712, 2043, 2234, 2256, 2524, 2581
RseI	CAYNNNNRTG	2 cut(s)	2169, 2571
SatI	GCNGC	4 cut(s)	656, 1245, 1326, 1362
Sau3AI	GATC	8 cut(s)	647, 673, 889, 1390, 1807, 1987, 2152, 2386
SchI	GAGTC	3 cut(s)	142, 1149, 2287
ScrFI	CCNGG	3 cut(s)	138, 780, 1944
SduI	GDGCHC	3 cut(s)	130, 152, 2164
SfaNI	GCATC	5 cut(s)	364, 623, 696, 1070, 2251
SfcI	CTRYAG	2 cut(s)	226, 875
Sfr274I	CTCGAG	2 cut(s)	848, 2333
SfuI	TTCGAA	1 cut(s)	381
SinI	GGWCC	9 cut(s)	95, 205, 788, 855, 1120, 1384, 1789, 2112, 2591
SlaI	CTCGAG	2 cut(s)	848, 2333
SmiMI	CAYNNNNRTG	2 cut(s)	2169, 2571
SmlI	CTYRAG	3 cut(s)	848, 1523, 2333
SmoI	CTYRAG	3 cut(s)	848, 1523, 2333
SphI	GCATGC	2 cut(s)	1031, 1163
SsiI	CCGC	6 cut(s)	517, 655, 709, 2262, 2275, 2366
SspI	AATATT	1 cut(s)	999
SspMI	CTAG	3 cut(s)	1286, 2292, 2537
StyD4I	CCNGG	3 cut(s)	136, 778, 1942
StyI	CCWWGG	2 cut(s)	608, 2503
TaiI	ACGT	4 cut(s)	2210, 2525, 2529, 2580
TaqII	GACCGA	1 cut(s)	2238
TatI	WGTACW	2 cut(s)	2233, 2580
TauI	GCSGC	1 cut(s)	658
TfiI	GAWTC	6 cut(s)	59, 318, 383, 963, 1277, 1996
TscAI	CASTG	3 cut(s)	776, 814, 1156
TseFI	GTSAC	9 cut(s)	25, 401, 554, 580, 1141, 1698, 1898, 2531, 2573
TseI	GCWGC	3 cut(s)	1244, 1325, 1361
Tsp45I	GTSAC	9 cut(s)	25, 401, 554, 580, 1141, 1698, 1898, 2531, 2573
TspDTI	ATGAA	9 cut(s)	51, 413, 606, 991, 1207, 1389, 1490, 2389, 2555
TspGWI	ACGGA	3 cut(s)	542, 2322, 2442
TspRI	CASTG	3 cut(s)	776, 814, 1156
Van91I	CCANNNNNTGG	2 cut(s)	609, 785
VpaK11BI	GGWCC	9 cut(s)	95, 205, 788, 855, 1120, 1384, 1789, 2112, 2591
VspI	ATTAAT	1 cut(s)	830
XagI	CCTNNNNNAGG	2 cut(s)	410, 1887
XapI	RAATTY	6 cut(s)	594, 895, 1081, 1106, 1214, 2064
XceI	RCATGY	4 cut(s)	886, 1031, 1163, 1874
XcmI	CCANNNNNNNNNTGG	1 cut(s)	768
XhoI	CTCGAG	2 cut(s)	848, 2333
XmnI	GAANNNNTTC	2 cut(s)	420, 1473
XspI	CTAG	3 cut(s)	1286, 2292, 2537
Zsp2I	ATGCAT	2 cut(s)	379, 1876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.