pycom05g21310

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0019752
Physical Location & Seq
Reverse (-)
23969529 .. 23970837
1309 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 357 bp
ATGACGTCGTTTAAGAAATTGGATCATCGGCAGAGCACTACGACACTTGTAGAGAGATGCAAAATGTTGGCTGCTAAGCCAGAATTCGGCGTAGGACAGAATCGGGTGGGAGAAGAAAACTCAACATGCTCACGTGTTGGTGTCTCAAGTTTTAAGTTTTATACAGAAAGTGACACTGCCAAAGCTGATGCCGGGATCGGGAGCGGTAAAAGTGAGAGGATTAAATCTTTGCAACGGGTTTCAGTGGGTACAAACGTTCAGACTGTGAATTTATCATCAAGGATATCCTTCCTGGTAAGAATGTTAAATCCTAGCATGCATTTTCCTTGTAACTCTCTTATTTACATGATTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

119

Amino Acids

13.0

Weight (kDa)

9.72

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019752)

Species Orthologous Gene IDs
malus_domestica MD05G1236000.v1.1 MD14G1179200.v1.1 MD14G1179300.v1.1
pyrus_communis pycom05g21270 pycom05g21310 pycom05g23790 pycom05g24070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AccBSI CCGCTC 1 cut(s) 204
AciI CCGC 1 cut(s) 204
AclI AACGTT 1 cut(s) 255
AclWI GGATC 2 cut(s) 30, 203
AcsI RAATTY 2 cut(s) 83, 268
AcvI CACGTG 1 cut(s) 134
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 250
AfiI CCNNNNNNNGG 2 cut(s) 86, 198
AflIII ACRYGT 1 cut(s) 133
AjnI CCWGG 1 cut(s) 291
AluBI AGCT 1 cut(s) 185
AluI AGCT 1 cut(s) 185
Alw21I GWGCWC 1 cut(s) 38
Alw26I GTCTC 1 cut(s) 148
AlwI GGATC 2 cut(s) 30, 203
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 2 cut(s) 83, 268
AsuC2I CCSGG 1 cut(s) 193
BaeI ACNNNNGTAYC 2 cut(s) 240, 273
BbrPI CACGTG 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 38
BbvI GCAGC 1 cut(s) 58
BciT130I CCWGG 1 cut(s) 293
BcnI CCSGG 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 148
BfaI CTAG 1 cut(s) 312
BisI GCNGC 1 cut(s) 72
BlpI GCTNAGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 73
Bme1390I CCNGG 2 cut(s) 193, 293
BmrFI CCNGG 2 cut(s) 193, 293
BmsI GCATC 2 cut(s) 47, 178
Bpu1102I GCTNAGC 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 130
BpuMI CCSGG 1 cut(s) 193
BsaAI YACGTR 1 cut(s) 134
BsaHI GRCGYC 1 cut(s) 5
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 198
BseBI CCWGG 1 cut(s) 293
BseLI CCNNNNNNNGG 2 cut(s) 86, 198
BseXI GCAGC 1 cut(s) 58
BsiHKAI GWGCWC 1 cut(s) 38
BsiSI CCGG 1 cut(s) 192
BslI CCNNNNNNNGG 2 cut(s) 86, 198
BsmAI GTCTC 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 38
Bsp143I GATC 2 cut(s) 22, 195
Bsp1720I GCTNAGC 1 cut(s) 75
BspACI CCGC 1 cut(s) 204
BspPI GGATC 2 cut(s) 30, 203
BsrBI CCGCTC 1 cut(s) 204
BssMI GATC 2 cut(s) 22, 195
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 293
Bst4CI ACNGT 1 cut(s) 265
BstACI GRCGYC 1 cut(s) 5
BstBAI YACGTR 1 cut(s) 134
BstC8I GCNNGC 1 cut(s) 317
BstDEI CTNAG 1 cut(s) 75
BstKTI GATC 2 cut(s) 25, 198
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 2 cut(s) 22, 195
BstNI CCWGG 1 cut(s) 293
BstNSI RCATGY 2 cut(s) 129, 319
BstSCI CCNGG 2 cut(s) 191, 291
BstV1I GCAGC 1 cut(s) 58
BtsI GCAGTG 1 cut(s) 174
BtsIMutI CAGTG 2 cut(s) 174, 249
Cac8I GCNNGC 1 cut(s) 317
Csp6I GTAC 1 cut(s) 249
CviAII CATG 3 cut(s) 126, 316, 346
CviJI RGCY 3 cut(s) 71, 79, 185
CviKI_1 RGCY 3 cut(s) 71, 79, 185
CviQI GTAC 1 cut(s) 249
DdeI CTNAG 1 cut(s) 75
DpnI GATC 2 cut(s) 24, 197
DpnII GATC 2 cut(s) 22, 195
Eco32I GATATC 1 cut(s) 285
Eco72I CACGTG 1 cut(s) 134
EcoRI GAATTC 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 291
EcoRV GATATC 1 cut(s) 285
EcoT22I ATGCAT 1 cut(s) 321
FaeI CATG 3 cut(s) 129, 319, 349
FaiI YATR 5 cut(s) 127, 162, 317, 347, 355
FatI CATG 3 cut(s) 125, 315, 345
Fnu4HI GCNGC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 1 cut(s) 312
GluI GCNGC 1 cut(s) 72
HapII CCGG 1 cut(s) 192
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 129, 319, 349
HinfI GANTC 1 cut(s) 100
HpaII CCGG 1 cut(s) 192
Hpy188I TCNGA 1 cut(s) 261
Hpy188III TCNNGA 1 cut(s) 199
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 298
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4IV ACGT 3 cut(s) 5, 133, 255
HpyCH4V TGCA 4 cut(s) 60, 232, 319, 353
HpyF3I CTNAG 1 cut(s) 75
HpySE526I ACGT 3 cut(s) 5, 133, 255
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 129, 319, 349
Kzo9I GATC 2 cut(s) 22, 195
LmnI GCTCC 1 cut(s) 201
LpnPI CCDG 4 cut(s) 93, 205, 278, 305
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 2 cut(s) 47, 178
MaeI CTAG 1 cut(s) 312
MaeII ACGT 3 cut(s) 5, 133, 255
MaeIII GTNAC 2 cut(s) 170, 329
MalI GATC 2 cut(s) 24, 197
MbiI CCGCTC 1 cut(s) 204
MboI GATC 2 cut(s) 22, 195
MboII GAAGA 1 cut(s) 125
MhlI GDGCHC 1 cut(s) 38
MluCI AATT 3 cut(s) 17, 83, 268
MnlI CCTC 1 cut(s) 210
Mph1103I ATGCAT 1 cut(s) 321
MseI TTAA 4 cut(s) 12, 153, 222, 305
MspI CCGG 1 cut(s) 192
MspR9I CCNGG 2 cut(s) 193, 293
MvaI CCWGG 1 cut(s) 293
NciI CCSGG 1 cut(s) 193
NdeII GATC 2 cut(s) 22, 195
NlaIII CATG 3 cut(s) 129, 319, 349
NmuCI GTSAC 1 cut(s) 170
NsiI ATGCAT 1 cut(s) 321
NspI RCATGY 2 cut(s) 129, 319
PaeI GCATGC 1 cut(s) 319
PfeI GAWTC 1 cut(s) 100
PkrI GCNGC 1 cut(s) 73
PmaCI CACGTG 1 cut(s) 134
PmlI CACGTG 1 cut(s) 134
Ppu21I YACGTR 1 cut(s) 134
Psp1406I AACGTT 1 cut(s) 255
Psp6I CCWGG 1 cut(s) 291
PspCI CACGTG 1 cut(s) 134
PspGI CCWGG 1 cut(s) 291
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
SaqAI TTAA 4 cut(s) 12, 153, 222, 305
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 2 cut(s) 22, 195
ScrFI CCNGG 2 cut(s) 193, 293
SduI GDGCHC 1 cut(s) 38
SetI ASST 4 cut(s) 8, 136, 187, 258
SfaNI GCATC 2 cut(s) 47, 178
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
SphI GCATGC 1 cut(s) 319
Sse9I AATT 3 cut(s) 17, 83, 268
SsiI CCGC 1 cut(s) 204
SspMI CTAG 1 cut(s) 312
StyD4I CCNGG 2 cut(s) 191, 291
TaaI ACNGT 1 cut(s) 265
TaiI ACGT 3 cut(s) 8, 136, 258
TasI AATT 3 cut(s) 17, 83, 268
TfiI GAWTC 1 cut(s) 100
Tru1I TTAA 4 cut(s) 12, 153, 222, 305
Tru9I TTAA 4 cut(s) 12, 153, 222, 305
TscAI CASTG 2 cut(s) 181, 249
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 170
TspRI CASTG 2 cut(s) 181, 249
XapI RAATTY 2 cut(s) 83, 268
XceI RCATGY 2 cut(s) 129, 319
XspI CTAG 1 cut(s) 312
ZraI GACGTC 1 cut(s) 6
Zsp2I ATGCAT 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.