pycom05g23790

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0019752
Physical Location & Seq
Forward (+)
25548208 .. 25549250
1043 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 393 bp
ATGTTGGCTGCTAAGGTCGGAAAAATCCATAAAGCCAGAATTCGGCGTAGGACAGAAAACTCAACATGCTCACGTGGTGTGGAACCGCAATTCTGGGTTCTTCTGCTGGTTTTAAGGTCTTGTGGTGGTGATTTATTTACTTCTGACCTTCTTTTTCGATATTTTAAACAGTTGGTGTCTCAAGTTTTAAGGTTTATACTGAAAGTGACACTGCCAAAGCTGATGCTGGGATCGGTTAACAAAGTATCGGCTGTGGAGAATGCAGCTTCTTTAAAGGCTGGTTTGAAATGTATGGAGAAGCAAAAAGGCATACTTGGTAGTTCTTGCAGCAAATGCAAATGTTGGAAGAAGAGCATTGGCCGATGTCTGCAATGGCAAAAGCAACTCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

131

Amino Acids

14.68

Weight (kDa)

10.28

Isoelectric Point (pI)

50.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019752)

Species Orthologous Gene IDs
malus_domestica MD05G1236000.v1.1 MD14G1179200.v1.1 MD14G1179300.v1.1
pyrus_communis pycom05g21270 pycom05g21310 pycom05g23790 pycom05g24070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 86
AclWI GGATC 1 cut(s) 238
AcoI YGGCCR 1 cut(s) 358
AcsI RAATTY 1 cut(s) 39
AcvI CACGTG 1 cut(s) 74
AdeI CACNNNGTG 1 cut(s) 77
AfiI CCNNNNNNNGG 1 cut(s) 42
AgsI TTSAA 1 cut(s) 286
AluBI AGCT 2 cut(s) 220, 266
AluI AGCT 2 cut(s) 220, 266
Alw26I GTCTC 1 cut(s) 183
AlwI GGATC 1 cut(s) 238
AoxI GGCC 1 cut(s) 358
ApeKI GCWGC 3 cut(s) 8, 263, 327
ApoI RAATTY 1 cut(s) 39
AsuHPI GGTGA 1 cut(s) 140
BbrPI CACGTG 1 cut(s) 74
BbvI GCAGC 2 cut(s) 275, 339
BcoDI GTCTC 1 cut(s) 183
BfaI CTAG 1 cut(s) 391
BisI GCNGC 3 cut(s) 9, 264, 328
BlsI GCNGC 3 cut(s) 10, 265, 329
BmiI GGNNCC 1 cut(s) 84
BmsI GCATC 1 cut(s) 213
Bpu10I CCTNAGC 1 cut(s) 12
BpuEI CTTGAG 1 cut(s) 165
BsaAI YACGTR 1 cut(s) 74
Bsc4I CCNNNNNNNGG 1 cut(s) 42
Bse3DI GCAATG 1 cut(s) 377
BseLI CCNNNNNNNGG 1 cut(s) 42
BseMI GCAATG 1 cut(s) 377
BseXI GCAGC 2 cut(s) 275, 339
BseYI CCCAGC 1 cut(s) 226
BshFI GGCC 1 cut(s) 360
BslI CCNNNNNNNGG 1 cut(s) 42
BsmAI GTCTC 1 cut(s) 183
BsmI GAATGC 1 cut(s) 265
BsnI GGCC 1 cut(s) 360
Bsp143I GATC 1 cut(s) 230
BspACI CCGC 1 cut(s) 86
BspANI GGCC 1 cut(s) 360
BspLI GGNNCC 1 cut(s) 84
BspPI GGATC 1 cut(s) 238
BspQI GCTCTTC 1 cut(s) 344
BsrDI GCAATG 1 cut(s) 377
BssMI GATC 1 cut(s) 230
Bst4CI ACNGT 1 cut(s) 171
Bst6I CTCTTC 1 cut(s) 344
BstAPI GCANNNNNTGC 1 cut(s) 333
BstBAI YACGTR 1 cut(s) 74
BstDEI CTNAG 1 cut(s) 12
BstKTI GATC 1 cut(s) 233
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 1 cut(s) 230
BstMWI GCNNNNNNNGC 1 cut(s) 333
BstNSI RCATGY 1 cut(s) 69
BstV1I GCAGC 2 cut(s) 275, 339
BsuRI GGCC 1 cut(s) 360
BtsI GCAGTG 1 cut(s) 209
BtsIMutI CAGTG 1 cut(s) 209
CviAII CATG 1 cut(s) 66
CviJI RGCY 7 cut(s) 8, 35, 220, 251, 266, 278, 360
CviKI_1 RGCY 7 cut(s) 8, 35, 220, 251, 266, 278, 360
DdeI CTNAG 1 cut(s) 12
DpnI GATC 1 cut(s) 232
DpnII GATC 1 cut(s) 230
DraI TTTAAA 2 cut(s) 166, 273
DraIII CACNNNGTG 1 cut(s) 77
EaeI YGGCCR 1 cut(s) 358
Eam1104I CTCTTC 1 cut(s) 344
EarI CTCTTC 1 cut(s) 344
Eco72I CACGTG 1 cut(s) 74
EcoRI GAATTC 1 cut(s) 39
FaeI CATG 1 cut(s) 69
FaiI YATR 5 cut(s) 30, 67, 197, 293, 311
FalI AAGNNNNNCTT 3 cut(s) 297, 329, 371
FatI CATG 1 cut(s) 65
Fnu4HI GCNGC 3 cut(s) 9, 264, 328
Fsp4HI GCNGC 3 cut(s) 9, 264, 328
FspBI CTAG 1 cut(s) 391
GluI GCNGC 3 cut(s) 9, 264, 328
GsaI CCCAGC 1 cut(s) 230
HaeIII GGCC 1 cut(s) 360
Hin1II CATG 1 cut(s) 69
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HpaI GTTAAC 1 cut(s) 238
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 2 cut(s) 20, 145
Hpy8I GTNNAC 1 cut(s) 238
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4IV ACGT 1 cut(s) 73
HpyCH4V TGCA 4 cut(s) 263, 327, 336, 370
HpyF10VI GCNNNNNNNGC 1 cut(s) 333
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 73
Hsp92II CATG 1 cut(s) 69
KspAI GTTAAC 1 cut(s) 238
Kzo9I GATC 1 cut(s) 230
LguI GCTCTTC 1 cut(s) 344
LpnPI CCDG 5 cut(s) 49, 79, 92, 212, 264
Lsp1109I GCAGC 2 cut(s) 275, 339
LweI GCATC 1 cut(s) 213
MaeI CTAG 1 cut(s) 391
MaeII ACGT 1 cut(s) 73
MaeIII GTNAC 1 cut(s) 205
MalI GATC 1 cut(s) 232
MboI GATC 1 cut(s) 230
MboII GAAGA 4 cut(s) 92, 358, 361, 379
MluCI AATT 2 cut(s) 39, 89
MmeI TCCRAC 1 cut(s) 323
MseI TTAA 5 cut(s) 113, 165, 188, 237, 272
Mva1269I GAATGC 1 cut(s) 265
MwoI GCNNNNNNNGC 1 cut(s) 333
NdeII GATC 1 cut(s) 230
NlaIII CATG 1 cut(s) 69
NlaIV GGNNCC 1 cut(s) 84
NmuCI GTSAC 1 cut(s) 205
NspI RCATGY 1 cut(s) 69
PciSI GCTCTTC 1 cut(s) 344
PctI GAATGC 1 cut(s) 265
PkrI GCNGC 3 cut(s) 10, 265, 329
PmaCI CACGTG 1 cut(s) 74
PmlI CACGTG 1 cut(s) 74
Ppu21I YACGTR 1 cut(s) 74
PspCI CACGTG 1 cut(s) 74
PspFI CCCAGC 1 cut(s) 226
PspN4I GGNNCC 1 cut(s) 84
SapI GCTCTTC 1 cut(s) 344
SaqAI TTAA 5 cut(s) 113, 165, 188, 237, 272
SatI GCNGC 3 cut(s) 9, 264, 328
Sau3AI GATC 1 cut(s) 230
SetI ASST 7 cut(s) 18, 76, 119, 150, 194, 222, 268
SfaNI GCATC 1 cut(s) 213
SmlI CTYRAG 1 cut(s) 180
SmoI CTYRAG 1 cut(s) 180
Sse9I AATT 2 cut(s) 39, 89
SsiI CCGC 1 cut(s) 86
SspMI CTAG 1 cut(s) 391
TaaI ACNGT 1 cut(s) 171
TaiI ACGT 1 cut(s) 76
TaqI TCGA 1 cut(s) 157
TasI AATT 2 cut(s) 39, 89
Tru1I TTAA 5 cut(s) 113, 165, 188, 237, 272
Tru9I TTAA 5 cut(s) 113, 165, 188, 237, 272
TscAI CASTG 1 cut(s) 216
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 3 cut(s) 8, 263, 327
Tsp45I GTSAC 1 cut(s) 205
TspRI CASTG 1 cut(s) 216
XapI RAATTY 1 cut(s) 39
XceI RCATGY 1 cut(s) 69
XspI CTAG 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.